Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:18718476-20698497

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353 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(16Dgcr2-Hira)1Rak 16 17840355 to 18970309 1129954 complex/cluster/region deletion, Chr 16, Raju Kucherlapati 1
Del(16Dgcr2-Hira)3Aam 16 17840355 to 18970309 1129954 complex/cluster/region deletion, Chr 16, Alea A Mills 3
Gm41429 16 18696660 to 18718994 22334 + lncRNA gene predicted gene, 41429
Gm41428 16 18731715 to 18734266 2551 + lncRNA gene predicted gene, 41428
Tssr140285 16 18733151 to 18733193 42 - TSS region transcription start site region 140285
Tssr140286 16 18733222 to 18733246 24 - TSS region transcription start site region 140286
Tssr137383 16 18776100 to 18776139 39 + TSS region transcription start site region 137383
Tssr140287 16 18776648 to 18776681 33 - TSS region transcription start site region 140287
Tssr137384 16 18776839 to 18776856 17 + TSS region transcription start site region 137384
Del(16Cldn5-Hira)5Bld 16 18776847 to 18970309 193462 complex/cluster/region deletion, Chr 16, Antonio Baldini 5
Cldn5 16 18776847 to 18778262 1415 + protein coding gene claudin 5
Cpgi8060 16 18776877 to 18777955 1078 CpG island CpG island 8060
Cdc45 16 18780447 to 18811987 31540 - protein coding gene cell division cycle 45
Tssr140288 16 18784309 to 18784313 4 - TSS region transcription start site region 140288
Cpgi8061 16 18811317 to 18812701 1384 CpG island CpG island 8061
Tssr140289 16 18811584 to 18811609 25 - TSS region transcription start site region 140289
Tssr140290 16 18811615 to 18811635 20 - TSS region transcription start site region 140290
Tssr140291 16 18811638 to 18811643 5 - TSS region transcription start site region 140291
Tssr137385 16 18811772 to 18811787 15 + TSS region transcription start site region 137385
Ufd1 16 18811819 to 18835261 23442 + protein coding gene ubiquitin recognition factor in ER-associated degradation 1
Tssr140292 16 18812003 to 18812025 22 - TSS region transcription start site region 140292
Tssr137386 16 18812286 to 18812336 50 + TSS region transcription start site region 137386
D630030B22Rik 16 18829324 to 18831490 2166 unclassified gene RIKEN cDNA D630030B22 gene
9430099O15Rik 16 18831431 to 18833449 2018 unclassified gene RIKEN cDNA 9430099O15 gene
Tssr137387 16 18832176 to 18832183 7 + TSS region transcription start site region 137387
Cpgi8062 16 18836455 to 18837020 565 CpG island CpG island 8062
Tssr137388 16 18836573 to 18836583 10 + TSS region transcription start site region 137388
2510002D24Rik 16 18836580 to 18840113 3533 + protein coding gene RIKEN cDNA 2510002D24 gene
Gm28539 16 18836584 to 18956247 119663 + protein coding gene predicted gene 28539
Mrpl40 16 18872018 to 18876637 4619 - protein coding gene mitochondrial ribosomal protein L40
Cpgi8063 16 18876294 to 18877960 1666 CpG island CpG island 8063
Tssr140293 16 18876522 to 18876570 48 - TSS region transcription start site region 140293
Tssr140294 16 18876598 to 18876609 11 - TSS region transcription start site region 140294
Tssr140295 16 18876619 to 18876653 34 - TSS region transcription start site region 140295
Tssr140296 16 18876655 to 18876668 13 - TSS region transcription start site region 140296
Tssr137389 16 18876709 to 18876739 30 + TSS region transcription start site region 137389
Hira 16 18877037 to 18970309 93272 + protein coding gene histone cell cycle regulator
Tssr137390 16 18877213 to 18877241 28 + TSS region transcription start site region 137390
Tssr137391 16 18877247 to 18877275 28 + TSS region transcription start site region 137391
Tssr137392 16 18893775 to 18893777 2 + TSS region transcription start site region 137392
Gm15799 16 18937401 to 18937689 288 + pseudogene predicted gene 15799
Gm15798 16 18944258 to 18944665 407 - pseudogene predicted gene 15798
Cpgi8064 16 18976574 to 18976770 196 CpG island CpG island 8064
Gm18747 16 19018058 to 19018702 644 - pseudogene predicted gene, 18747
Igl 16 19026858 to 19260844 233986 - complex/cluster/region immunoglobulin lambda chain complex
Gm10088 16 19028232 to 19028654 422 + pseudogene predicted gene 10088
Tssr137393 16 19035889 to 19035918 29 + TSS region transcription start site region 137393
Tssr137394 16 19051332 to 19051369 37 + TSS region transcription start site region 137394
Iglc1 16 19061752 to 19062071 319 - gene segment immunoglobulin lambda constant 1
Iglj1 16 19063225 to 19063262 37 - gene segment immunoglobulin lambda joining 1
Tssr140297 16 19063238 to 19063249 11 - TSS region transcription start site region 140297
Tssr140298 16 19063266 to 19063285 19 - TSS region transcription start site region 140298
Tssr137395 16 19063294 to 19063331 37 + TSS region transcription start site region 137395
Tssr140299 16 19063465 to 19063504 39 - TSS region transcription start site region 140299
Tssr140300 16 19063521 to 19063560 39 - TSS region transcription start site region 140300
Tssr137396 16 19063587 to 19063614 27 + TSS region transcription start site region 137396
Tssr140301 16 19063590 to 19063599 9 - TSS region transcription start site region 140301
Iglc3 16 19065365 to 19065681 316 - gene segment immunoglobulin lambda constant 3
Iglj3p 16 19066371 to 19066408 37 - pseudogenic gene segment immunoglobulin lambda joining 3 pseudogene
Iglj3 16 19067041 to 19067078 37 - gene segment immunoglobulin lambda joining 3
Tssr140302 16 19067059 to 19067094 35 - TSS region transcription start site region 140302
Tssr140303 16 19067104 to 19067109 5 - TSS region transcription start site region 140303
Tssr140304 16 19067115 to 19067165 50 - TSS region transcription start site region 140304
Tssr140305 16 19067183 to 19067195 12 - TSS region transcription start site region 140305
Tssr137397 16 19067232 to 19067245 13 + TSS region transcription start site region 137397
Iglv1 16 19085017 to 19085460 443 - gene segment immunoglobulin lambda variable 1
Tssr140306 16 19085490 to 19085506 16 - TSS region transcription start site region 140306
2010309G21Rik 16 19090060 to 19106870 16810 + antisense lncRNA gene RIKEN cDNA 2010309G21 gene
Gm18748 16 19161427 to 19168046 6619 - pseudogene predicted gene, 18748
Tssr137398 16 19179506 to 19179547 41 + TSS region transcription start site region 137398
Iglc4 16 19194999 to 19195312 313 - pseudogenic gene segment immunoglobulin lambda constant 4
Iglj4 16 19196495 to 19196536 41 - pseudogenic gene segment immunoglobulin lambda joining 4
Iglc2 16 19198536 to 19198852 316 - gene segment immunoglobulin lambda constant 2
Iglj2 16 19200198 to 19200235 37 - gene segment immunoglobulin lambda joining 2
Tssr140307 16 19200230 to 19200250 20 - TSS region transcription start site region 140307
Tssr140308 16 19200275 to 19200297 22 - TSS region transcription start site region 140308
Tssr140309 16 19200308 to 19200318 10 - TSS region transcription start site region 140309
Tssr140310 16 19200350 to 19200354 4 - TSS region transcription start site region 140310
Gm43388 16 19212660 to 19236776 24116 - lincRNA gene predicted gene 43388
Gm35545 16 19217787 to 19241334 23547 + lncRNA gene predicted gene, 35545
Tssr140311 16 19218418 to 19218427 9 - TSS region transcription start site region 140311
Tssr140312 16 19218449 to 19218456 7 - TSS region transcription start site region 140312
Tssr137399 16 19218572 to 19218603 31 + TSS region transcription start site region 137399
Tssr137400 16 19218613 to 19218620 7 + TSS region transcription start site region 137400
Gm42870 16 19231333 to 19234802 3469 + unclassified gene predicted gene 42870
Tssr137401 16 19232603 to 19232608 5 + TSS region transcription start site region 137401
Tssr140313 16 19235621 to 19235630 9 - TSS region transcription start site region 140313
Tssr140314 16 19236091 to 19236109 18 - TSS region transcription start site region 140314
Tssr140315 16 19236210 to 19236213 3 - TSS region transcription start site region 140315
Tssr140316 16 19236218 to 19236251 33 - TSS region transcription start site region 140316
Tssr140317 16 19236255 to 19236264 9 - TSS region transcription start site region 140317
Tssr137402 16 19236342 to 19236352 10 + TSS region transcription start site region 137402
Tssr137403 16 19236391 to 19236403 12 + TSS region transcription start site region 137403
Tssr140318 16 19236818 to 19236829 11 - TSS region transcription start site region 140318
Tssr140319 16 19236846 to 19236856 10 - TSS region transcription start site region 140319
Tssr140320 16 19236860 to 19236866 6 - TSS region transcription start site region 140320
Tssr140321 16 19236868 to 19236892 24 - TSS region transcription start site region 140321
Tssr140322 16 19236898 to 19236907 9 - TSS region transcription start site region 140322
Tssr140323 16 19241104 to 19241108 4 - TSS region transcription start site region 140323
Iglv3 16 19241208 to 19241679 471 - gene segment immunoglobulin lambda variable 3
Tssr137404 16 19241214 to 19241259 45 + TSS region transcription start site region 137404
Tssr137405 16 19241274 to 19241284 10 + TSS region transcription start site region 137405
Tssr140324 16 19241695 to 19241710 15 - TSS region transcription start site region 140324
Tssr140325 16 19241712 to 19241736 24 - TSS region transcription start site region 140325
Tssr140326 16 19241807 to 19241814 7 - TSS region transcription start site region 140326
A530030E21Rik 16 19243525 to 19244834 1309 + unclassified gene RIKEN cDNA A530030E21 gene
Iglv2 16 19260403 to 19260844 441 - gene segment immunoglobulin lambda variable 2
Tssr140327 16 19260875 to 19260889 14 - TSS region transcription start site region 140327
Olfr164 16 19285794 to 19286741 947 - protein coding gene olfactory receptor 164
Gm22158 16 19307699 to 19307824 125 + snoRNA gene predicted gene, 22158
Gm23612 16 19319686 to 19319795 109 + miRNA gene predicted gene, 23612
Olfr165 16 19406244 to 19423134 16890 - protein coding gene olfactory receptor 165
Gm25762 16 19411158 to 19411289 131 + snoRNA gene predicted gene, 25762
Olfr166 16 19486840 to 19487778 938 + protein coding gene olfactory receptor 166
Olfr167 16 19514696 to 19515634 938 - protein coding gene olfactory receptor 167
Olfr168 16 19529980 to 19530918 938 - protein coding gene olfactory receptor 168
Olfr169 16 19565940 to 19566881 941 - protein coding gene olfactory receptor 169
Olfr170 16 19605725 to 19606666 941 - protein coding gene olfactory receptor 170
Olfr171 16 19624157 to 19625101 944 - protein coding gene olfactory receptor 171
Gm49596 16 19631902 to 19632342 440 + pseudogene predicted gene, 49596
Lamp3 16 19653381 to 19706365 52984 - protein coding gene lysosomal-associated membrane protein 3
Tssr140328 16 19673167 to 19673184 17 - TSS region transcription start site region 140328
Tssr140329 16 19673248 to 19673257 9 - TSS region transcription start site region 140329
Tssr140330 16 19701324 to 19701335 11 - TSS region transcription start site region 140330
Tssr140331 16 19706293 to 19706297 4 - TSS region transcription start site region 140331
Tssr140332 16 19706305 to 19706333 28 - TSS region transcription start site region 140332
Tssr140333 16 19706340 to 19706352 12 - TSS region transcription start site region 140333
Tssr140334 16 19706370 to 19706399 29 - TSS region transcription start site region 140334
Tssr140335 16 19708476 to 19708497 21 - TSS region transcription start site region 140335
Gm17799 16 19723312 to 19723978 666 + pseudogene predicted gene, 17799
Tssr140336 16 19758206 to 19758213 7 - TSS region transcription start site region 140336
Tssr137406 16 19760195 to 19760227 32 + TSS region transcription start site region 137406
Tssr137407 16 19760232 to 19760247 15 + TSS region transcription start site region 137407
B3gnt5 16 19760234 to 19772760 12526 + protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
Tssr137408 16 19760263 to 19760331 68 + TSS region transcription start site region 137408
Tssr137409 16 19760336 to 19760394 58 + TSS region transcription start site region 137409
Tssr137410 16 19760397 to 19760424 27 + TSS region transcription start site region 137410
Cpgi8065 16 19760593 to 19761486 893 CpG island CpG island 8065
Tssr137411 16 19760627 to 19760644 17 + TSS region transcription start site region 137411
Tssr137412 16 19760795 to 19760798 3 + TSS region transcription start site region 137412
Tssr137413 16 19760825 to 19760836 11 + TSS region transcription start site region 137413
Tssr137414 16 19760902 to 19760909 7 + TSS region transcription start site region 137414
Tssr137415 16 19761963 to 19761969 6 + TSS region transcription start site region 137415
Tssr137416 16 19765061 to 19765066 5 + TSS region transcription start site region 137416
Gm49597 16 19852455 to 19852767 312 - pseudogene predicted gene, 49597
Tssr140337 16 19873099 to 19873102 3 - TSS region transcription start site region 140337
A930003A15Rik 16 19876567 to 19884274 7707 - lincRNA gene RIKEN cDNA A930003A15 gene
Gm49598 16 19883504 to 19884284 780 + lincRNA gene predicted gene, 49598
Tssr140338 16 19883782 to 19883806 24 - TSS region transcription start site region 140338
Gm27883 16 19883799 to 19883900 101 - miRNA gene predicted gene, 27883
Tssr4807 16 19883824 to 19883831 7 - TSS region transcription start site region 4807
Tssr140339 16 19883861 to 19883872 11 - TSS region transcription start site region 140339
Tssr140340 16 19883873 to 19883915 42 - TSS region transcription start site region 140340
Tssr140341 16 19884231 to 19884252 21 - TSS region transcription start site region 140341
Tssr140342 16 19884267 to 19884285 18 - TSS region transcription start site region 140342
Tssr140343 16 19918288 to 19918293 5 - TSS region transcription start site region 140343
Klhl6 16 19946496 to 19983037 36541 - protein coding gene kelch-like 6
Tssr4808 16 19968176 to 19968181 5 - TSS region transcription start site region 4808
Tssr140344 16 19982959 to 19982964 5 - TSS region transcription start site region 140344
Tssr140345 16 19983005 to 19983029 24 - TSS region transcription start site region 140345
Tssr140346 16 19983031 to 19983037 6 - TSS region transcription start site region 140346
Tssr140347 16 19983052 to 19983067 15 - TSS region transcription start site region 140347
Tssr4809 16 19983112 to 19983117 5 - TSS region transcription start site region 4809
D16Mit144 16 20032633 to 20032782 149 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 144
Cpgi8066 16 20097404 to 20098447 1043 CpG island CpG island 8066
Klhl24 16 20097542 to 20129221 31679 + protein coding gene kelch-like 24
Tssr137417 16 20097555 to 20097596 41 + TSS region transcription start site region 137417
Tssr137418 16 20097603 to 20097615 12 + TSS region transcription start site region 137418
Tssr140348 16 20098080 to 20098101 21 - TSS region transcription start site region 140348
Tssr137419 16 20107537 to 20107560 23 + TSS region transcription start site region 137419
Tssr137420 16 20112504 to 20112517 13 + TSS region transcription start site region 137420
Tssr137421 16 20123602 to 20123606 4 + TSS region transcription start site region 137421
Tssr137422 16 20123821 to 20123838 17 + TSS region transcription start site region 137422
Cpgi8067 16 20140663 to 20141681 1018 CpG island CpG island 8067
Tssr137423 16 20141061 to 20141140 79 + TSS region transcription start site region 137423
Yeats2 16 20141063 to 20232573 91510 + protein coding gene YEATS domain containing 2
Tssr4810 16 20174731 to 20174753 22 + TSS region transcription start site region 4810
Gm10241 16 20176727 to 20177012 285 - pseudogene predicted pseudogene 10241
Tssr137424 16 20186510 to 20186519 9 + TSS region transcription start site region 137424
Tssr137425 16 20186544 to 20186549 5 + TSS region transcription start site region 137425
Tssr137426 16 20186572 to 20186577 5 + TSS region transcription start site region 137426
Tssr137427 16 20188791 to 20188802 11 + TSS region transcription start site region 137427
Tssr137428 16 20188809 to 20188811 2 + TSS region transcription start site region 137428
Tssr137429 16 20188822 to 20188831 9 + TSS region transcription start site region 137429
D16Mit28 16 20200579 to 20200725 146 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 28
Bwtn1 16 20200579 to 85803938 65603359 QTL body weight at necropsy 1
Map6d1 16 20233309 to 20241358 8049 - protein coding gene MAP6 domain containing 1
Gm41431 16 20236647 to 20237512 865 + lncRNA gene predicted gene, 41431
Cpgi8068 16 20240553 to 20241688 1135 CpG island CpG island 8068
Gm49566 16 20241027 to 20242114 1087 + antisense lncRNA gene predicted gene, 49566
Tssr140349 16 20241264 to 20241274 10 - TSS region transcription start site region 140349
Tssr140350 16 20241277 to 20241298 21 - TSS region transcription start site region 140350
Tssr140351 16 20241304 to 20241363 59 - TSS region transcription start site region 140351
Parl 16 20279818 to 20302387 22569 - protein coding gene presenilin associated, rhomboid-like
D16Ertd6e 16 20289236 to 20289435 199 DNA segment DNA segment, Chr 16, ERATO Doi 6, expressed
Tssr140352 16 20292132 to 20292143 11 - TSS region transcription start site region 140352
Tssr140353 16 20301787 to 20301808 21 - TSS region transcription start site region 140353
Tssr140354 16 20301811 to 20301820 9 - TSS region transcription start site region 140354
Cpgi8069 16 20301913 to 20302478 565 CpG island CpG island 8069
Tssr140355 16 20302324 to 20302345 21 - TSS region transcription start site region 140355