Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:16682315-17023857

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4933404G15Rik 16 16707687 to 16718121 10434 - lincRNA gene RIKEN cDNA 4933404G15 gene
Tssr140148 16 16718090 to 16718103 13 - TSS region transcription start site region 140148
Tssr140149 16 16718111 to 16718120 9 - TSS region transcription start site region 140149
Tssr140150 16 16718126 to 16718135 9 - TSS region transcription start site region 140150
Gm46570 16 16718213 to 16730527 12314 + lncRNA gene predicted gene, 46570
Gm34340 16 16728744 to 16742837 14093 - lncRNA gene predicted gene, 34340
Spag6l 16 16753016 to 16829456 76440 - protein coding gene sperm associated antigen 6-like
Rpl31-ps12 16 16819749 to 16820123 374 - pseudogene ribosomal protein L31, pseudogene 1 2
Cpgi7999 16 16828920 to 16829496 576 CpG island CpG island 7999
Tssr140151 16 16829243 to 16829253 10 - TSS region transcription start site region 140151
Tssr140152 16 16829258 to 16829261 3 - TSS region transcription start site region 140152
Tssr140153 16 16829276 to 16829349 73 - TSS region transcription start site region 140153
Gm49644 16 16848851 to 16849698 847 - pseudogene predicted gene, 49644
Tssr4803 16 16852297 to 16852312 15 + TSS region transcription start site region 4803
Gm5768 16 16852315 to 16853857 1542 + pseudogene predicted gene 5768
n-TKctt3 16 16854264 to 16854336 72 + tRNA gene nuclear encoded tRNA lysine 3 (anticodon CTT)
Igll1 16 16860671 to 16863985 3314 - protein coding gene immunoglobulin lambda-like polypeptide 1
Tssr140154 16 16863874 to 16863885 11 - TSS region transcription start site region 140154
Tssr140155 16 16863938 to 16863955 17 - TSS region transcription start site region 140155
Tssr140156 16 16863975 to 16864006 31 - TSS region transcription start site region 140156
Tssr140157 16 16865939 to 16865947 8 - TSS region transcription start site region 140157
Vpreb1 16 16868401 to 16869255 854 - protein coding gene pre-B lymphocyte gene 1
Tssr4804 16 16869259 to 16869283 24 - TSS region transcription start site region 4804
Cpgi8000 16 16870590 to 16871390 800 CpG island CpG island 8000
Tssr137244 16 16870707 to 16870718 11 + TSS region transcription start site region 137244
Tssr137245 16 16870727 to 16870736 9 + TSS region transcription start site region 137245
Top3b 16 16870736 to 16892990 22254 + protein coding gene topoisomerase (DNA) III beta
Tssr137246 16 16870742 to 16870816 74 + TSS region transcription start site region 137246
Tssr137247 16 16870829 to 16870844 15 + TSS region transcription start site region 137247
Tssr137248 16 16870864 to 16870908 44 + TSS region transcription start site region 137248
Tssr137249 16 16870955 to 16870969 14 + TSS region transcription start site region 137249
Tssr137250 16 16870994 to 16870997 3 + TSS region transcription start site region 137250
Cpgi8001 16 16896313 to 16896789 476 CpG island CpG island 8001
Ppm1f 16 16896469 to 16927364 30895 + protein coding gene protein phosphatase 1F (PP2C domain containing)
Tssr137251 16 16896556 to 16896598 42 + TSS region transcription start site region 137251
Gm49595 16 16909431 to 16911716 2285 - antisense lncRNA gene predicted gene, 49595
D16Mit74.1 16 16932538 to 16932647 109 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 74.1
D16Mit74 16 16932693 to 16932807 114 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 74
Gm46540 16 16932861 to 16933095 234 + pseudogene predicted gene, 46540
Gm6438 16 16968609 to 16969068 459 + pseudogene predicted gene 6438
Cpgi8002 16 16983043 to 16984086 1043 CpG island CpG island 8002
Mapk1 16 16983382 to 17047453 64071 + protein coding gene mitogen-activated protein kinase 1
Tssr137252 16 16983395 to 16983416 21 + TSS region transcription start site region 137252
Tssr137253 16 16983417 to 16983428 11 + TSS region transcription start site region 137253
Tssr137254 16 16983435 to 16983442 7 + TSS region transcription start site region 137254
Tssr137255 16 16983454 to 16983461 7 + TSS region transcription start site region 137255
Gm22558 16 17006107 to 17006201 94 - snRNA gene predicted gene, 22558
Tssr137256 16 17018384 to 17018399 15 + TSS region transcription start site region 137256