Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:14580376-16150459

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A630010A05Rik 16 14562317 to 14621284 58967 + protein coding gene RIKEN cDNA A630010A05 gene
Cpgi7987 16 14705435 to 14706414 979 CpG island CpG island 7987
Tssr137208 16 14705575 to 14705590 15 + TSS region transcription start site region 137208
Tssr137209 16 14705595 to 14705618 23 + TSS region transcription start site region 137209
Tssr4799 16 14705619 to 14705635 16 + TSS region transcription start site region 4799
Tssr137210 16 14705653 to 14705668 15 + TSS region transcription start site region 137210
Tssr137211 16 14705832 to 14705858 26 + TSS region transcription start site region 137211
Snai2 16 14705859 to 14709385 3526 + protein coding gene snail family zinc finger 2
Tssr137212 16 14705868 to 14705885 17 + TSS region transcription start site region 137212
Tssr137213 16 14706881 to 14706903 22 + TSS region transcription start site region 137213
Tssr137214 16 14708115 to 14708123 8 + TSS region transcription start site region 137214
Tssr137215 16 14708137 to 14708161 24 + TSS region transcription start site region 137215
Tssr137216 16 14708171 to 14708181 10 + TSS region transcription start site region 137216
Tssr137217 16 14708210 to 14708227 17 + TSS region transcription start site region 137217
Tssr137218 16 14708265 to 14708308 43 + TSS region transcription start site region 137218
Tssr137219 16 14708309 to 14708334 25 + TSS region transcription start site region 137219
Tssr4800 16 14708336 to 14708337 1 + TSS region transcription start site region 4800
Tssr137220 16 14708360 to 14708411 51 + TSS region transcription start site region 137220
Gm49530 16 14790417 to 14791011 594 - pseudogene predicted gene, 49530
Gm25547 16 14807163 to 14807269 106 - snRNA gene predicted gene, 25547
Gm33696 16 14892467 to 14949676 57209 - antisense lncRNA gene predicted gene, 33696
Efcab1 16 14906260 to 14965910 59650 + protein coding gene EF-hand calcium binding domain 1
Tssr137221 16 14906622 to 14906680 58 + TSS region transcription start site region 137221
Gm46561 16 14957623 to 14958505 882 - pseudogene predicted gene, 46561
Gm49536 16 15000322 to 15000489 167 + pseudogene predicted gene, 49536
Cpgi7988 16 15084477 to 15085325 848 CpG island CpG island 7988
F830005K03Rik 16 15092428 to 15095785 3357 - unclassified gene RIKEN cDNA F830005K03 gene
Gm41423 16 15101376 to 15114218 12842 - lncRNA gene predicted gene, 41423
Tssr140092 16 15114100 to 15114132 32 - TSS region transcription start site region 140092
Gm7731 16 15216859 to 15217328 469 - pseudogene predicted gene 7731
Gm5404 16 15218844 to 15221508 2664 + pseudogene predicted gene 5404
Tssr4801 16 15301395 to 15301405 10 - TSS region transcription start site region 4801
Gm21897 16 15317458 to 15318957 1499 + protein coding gene predicted gene, 21897
Tssr137222 16 15345534 to 15345535 1 + TSS region transcription start site region 137222
D16Mit56 16 15365376 to 15365459 83 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 56
Gm6031 16 15426151 to 15427204 1053 + pseudogene predicted gene 6031
Gm7085 16 15452004 to 15452762 758 + pseudogene predicted gene 7085
Gm41424 16 15490234 to 15529006 38772 - lncRNA gene predicted gene, 41424
Ube2v2 16 15550986 to 15594518 43532 - protein coding gene ubiquitin-conjugating enzyme E2 variant 2
Tssr140093 16 15564710 to 15564716 6 - TSS region transcription start site region 140093
Gm49538 16 15587365 to 15588059 694 + pseudogene predicted gene, 49538
Cpgi7989 16 15594020 to 15594665 645 CpG island CpG island 7989
Tssr140094 16 15594473 to 15594503 30 - TSS region transcription start site region 140094
Tssr140095 16 15594509 to 15594531 22 - TSS region transcription start site region 140095
Tssr137223 16 15604480 to 15604488 8 + TSS region transcription start site region 137223
Gm7748 16 15609107 to 15609515 408 + pseudogene predicted gene 7748
Mcm4 16 15623897 to 15637400 13503 - protein coding gene minichromosome maintenance complex component 4
Tssr140096 16 15626273 to 15626277 4 - TSS region transcription start site region 140096
Cpgi7990 16 15636680 to 15638278 1598 CpG island CpG island 7990
Tssr140097 16 15636729 to 15636748 19 - TSS region transcription start site region 140097
Tssr140098 16 15637277 to 15637385 108 - TSS region transcription start site region 140098
Tssr137224 16 15637844 to 15637884 40 + TSS region transcription start site region 137224
Prkdc 16 15637866 to 15842235 204369 + protein coding gene protein kinase, DNA activated, catalytic polypeptide
Tssr137225 16 15705225 to 15705249 24 + TSS region transcription start site region 137225
Tssr140099 16 15736677 to 15736679 2 - TSS region transcription start site region 140099
Gm49511 16 15750923 to 15751192 269 + pseudogene predicted gene, 49511
Mzt2 16 15848441 to 15863364 14923 - protein coding gene mitotic spindle organizing protein 2
Cpgi7991 16 15862453 to 15863570 1117 CpG island CpG island 7991
Tssr140100 16 15862923 to 15862951 28 - TSS region transcription start site region 140100
Tssr140101 16 15863119 to 15863126 7 - TSS region transcription start site region 140101
Tssr140102 16 15863223 to 15863238 15 - TSS region transcription start site region 140102
Tssr140103 16 15863263 to 15863273 10 - TSS region transcription start site region 140103
Tssr140104 16 15863293 to 15863339 46 - TSS region transcription start site region 140104
Tssr140105 16 15863354 to 15863359 5 - TSS region transcription start site region 140105
Gm41425 16 15863448 to 15877478 14030 + lncRNA gene predicted gene, 41425
Gm20082 16 15871829 to 15872159 330 + pseudogene predicted gene, 20082
Tssr140106 16 15885621 to 15885629 8 - TSS region transcription start site region 140106
Cpgi7992 16 15886654 to 15888596 1942 CpG island CpG island 7992
Tssr140107 16 15887131 to 15887161 30 - TSS region transcription start site region 140107
Tssr137226 16 15887278 to 15887292 14 + TSS region transcription start site region 137226
Cebpd 16 15887286 to 15889545 2259 + protein coding gene CCAAT/enhancer binding protein (C/EBP), delta
Tssr137227 16 15887448 to 15887461 13 + TSS region transcription start site region 137227
Tssr137228 16 15887776 to 15887800 24 + TSS region transcription start site region 137228
Tssr137229 16 15888135 to 15888152 17 + TSS region transcription start site region 137229
Spidr 16 15889224 to 16146851 257627 - protein coding gene scaffolding protein involved in DNA repair
Tssr137230 16 15892236 to 15892239 3 + TSS region transcription start site region 137230
Tssr140108 16 15895707 to 15895721 14 - TSS region transcription start site region 140108
Tssr140109 16 15895724 to 15895732 8 - TSS region transcription start site region 140109
Tssr140110 16 15895765 to 15895795 30 - TSS region transcription start site region 140110
Tssr140111 16 15895797 to 15895804 7 - TSS region transcription start site region 140111
D16Mit34 16 15913052 to 15913189 137 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 34
nmf219 16 15913052 to 32312179 16399127 heritable phenotypic marker neuroscience mutagenesis facility, 219
Rapop1 16 15913189 to 3962915 -11950274 QTL radiation-induced apoptosis 1
Tssr140112 16 15957740 to 15957743 3 - TSS region transcription start site region 140112
Tssr140113 16 15966655 to 15966670 15 - TSS region transcription start site region 140113
Tssr137231 16 15984477 to 15984512 35 + TSS region transcription start site region 137231
n-R5s31 16 16010900 to 16011009 109 - rRNA gene nuclear encoded rRNA 5S 31
Gm10121 16 16048815 to 16049759 944 + pseudogene predicted gene 10121
Tssr137232 16 16072742 to 16072751 9 + TSS region transcription start site region 137232
Tssr137233 16 16072755 to 16072773 18 + TSS region transcription start site region 137233
Tssr137234 16 16072781 to 16072792 11 + TSS region transcription start site region 137234
Tssr137235 16 16072793 to 16072797 4 + TSS region transcription start site region 137235
Tssr140114 16 16073392 to 16073399 7 - TSS region transcription start site region 140114
Tssr140115 16 16073404 to 16073450 46 - TSS region transcription start site region 140115
Gm18334 16 16099600 to 16100109 509 + pseudogene predicted gene, 18334
Cpgi7993 16 16146349 to 16147104 755 CpG island CpG island 7993
Tssr140116 16 16146771 to 16146836 65 - TSS region transcription start site region 140116