Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 16:10917081-12347085

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49960 16 10861755 to 10938364 76609 - pseudogene predicted gene, 49960
Tssr139970 16 10954775 to 10954782 7 - TSS region transcription start site region 139970
Litaf 16 10959273 to 10993121 33848 - protein coding gene LPS-induced TN factor
Tssr139971 16 10960458 to 10960461 3 - TSS region transcription start site region 139971
Tssr139972 16 10960521 to 10960544 23 - TSS region transcription start site region 139972
Tssr139973 16 10960580 to 10960591 11 - TSS region transcription start site region 139973
Tssr139974 16 10960707 to 10960714 7 - TSS region transcription start site region 139974
Tssr137064 16 10960855 to 10960866 11 + TSS region transcription start site region 137064
Tssr139975 16 10960911 to 10960914 3 - TSS region transcription start site region 139975
Tssr139976 16 10960988 to 10961002 14 - TSS region transcription start site region 139976
Tssr139977 16 10961045 to 10961052 7 - TSS region transcription start site region 139977
Tssr139978 16 10963289 to 10963305 16 - TSS region transcription start site region 139978
Tssr139979 16 10963355 to 10963409 54 - TSS region transcription start site region 139979
Tssr139980 16 10963611 to 10963655 44 - TSS region transcription start site region 139980
Gm26268 16 10965724 to 10965849 125 + miRNA gene predicted gene, 26268
Tssr139981 16 10966461 to 10966491 30 - TSS region transcription start site region 139981
Tssr139982 16 10966498 to 10966566 68 - TSS region transcription start site region 139982
Tssr139983 16 10966579 to 10966613 34 - TSS region transcription start site region 139983
Tssr139984 16 10971286 to 10971291 5 - TSS region transcription start site region 139984
Tssr137065 16 10976350 to 10976363 13 + TSS region transcription start site region 137065
Tssr4793 16 10976612 to 10976644 32 + TSS region transcription start site region 4793
Tssr139985 16 10983688 to 10983709 21 - TSS region transcription start site region 139985
Tssr139986 16 10992144 to 10992190 46 - TSS region transcription start site region 139986
Cpgi7957 16 10992269 to 10993435 1166 CpG island CpG island 7957
Tssr4794 16 10992335 to 10992354 19 + TSS region transcription start site region 4794
Tssr139987 16 10992644 to 10992665 21 - TSS region transcription start site region 139987
Tssr139988 16 10993070 to 10993094 24 - TSS region transcription start site region 139988
Tssr139989 16 10993100 to 10993111 11 - TSS region transcription start site region 139989
Tssr139990 16 10993135 to 10993138 3 - TSS region transcription start site region 139990
Gm24961 16 10994386 to 10994569 183 + snRNA gene predicted gene, 24961
Tssr139991 16 11006070 to 11006109 39 - TSS region transcription start site region 139991
Tssr137066 16 11008464 to 11008493 29 + TSS region transcription start site region 137066
Gm4262 16 11008898 to 11015184 6286 + lincRNA gene predicted gene 4262
Tssr137067 16 11008935 to 11008946 11 + TSS region transcription start site region 137067
Tssr137068 16 11011510 to 11011551 41 + TSS region transcription start site region 137068
Tssr139992 16 11021516 to 11021556 40 - TSS region transcription start site region 139992
Tssr137069 16 11021643 to 11021682 39 + TSS region transcription start site region 137069
Tssr4795 16 11022148 to 11022151 3 - TSS region transcription start site region 4795
Tssr137070 16 11022322 to 11022332 10 + TSS region transcription start site region 137070
Gm10832 16 11031956 to 11036420 4464 + lincRNA gene predicted gene 10832
Tssr137071 16 11032100 to 11032139 39 + TSS region transcription start site region 137071
Gm3919 16 11036674 to 11037331 657 - pseudogene predicted gene 3919
Gm18724 16 11046935 to 11047932 997 + pseudogene predicted gene, 18724
1700096C16Rik 16 11055919 to 11056084 165 unclassified gene RIKEN cDNA 1700096C16 gene
Gm9861 16 11059975 to 11066217 6242 - unclassified gene predicted gene 9861
Tssr137072 16 11060935 to 11060949 14 + TSS region transcription start site region 137072
Cpgi7958 16 11065838 to 11067163 1325 CpG island CpG island 7958
Tssr139993 16 11066077 to 11066109 32 - TSS region transcription start site region 139993
Tssr139994 16 11066141 to 11066165 24 - TSS region transcription start site region 139994
Tssr137073 16 11066292 to 11066381 89 + TSS region transcription start site region 137073
Snn 16 11066298 to 11074985 8687 + protein coding gene stannin
Txndc11 16 11074911 to 11134650 59739 - protein coding gene thioredoxin domain containing 11
Tssr137074 16 11077866 to 11077891 25 + TSS region transcription start site region 137074
Cpgi7959 16 11133993 to 11135111 1118 CpG island CpG island 7959
Tssr139995 16 11134497 to 11134512 15 - TSS region transcription start site region 139995
Tssr139996 16 11134546 to 11134590 44 - TSS region transcription start site region 139996
Tssr139997 16 11134601 to 11134623 22 - TSS region transcription start site region 139997
Tssr139998 16 11134624 to 11134659 35 - TSS region transcription start site region 139998
Zc3h7a 16 11136594 to 11176393 39799 - protein coding gene zinc finger CCCH type containing 7 A
D16Mit164 16 11139692 to 11139842 150 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 164
Dice1a 16 11139842 to 7983236 -3156606 QTL determination of interleukin 4 commitment 1a
Tssr137075 16 11143903 to 11143905 2 + TSS region transcription start site region 137075
Tssr137076 16 11143967 to 11143990 23 + TSS region transcription start site region 137076
Tssr137077 16 11144042 to 11144081 39 + TSS region transcription start site region 137077
Cpgi7960 16 11144061 to 11144431 370 CpG island CpG island 7960
Tssr137078 16 11144095 to 11144118 23 + TSS region transcription start site region 137078
Gm23935 16 11144125 to 11144181 56 + miRNA gene predicted gene, 23935
Tssr139999 16 11150133 to 11150137 4 - TSS region transcription start site region 139999
Tssr140000 16 11151731 to 11151765 34 - TSS region transcription start site region 140000
Tssr140001 16 11155096 to 11155115 19 - TSS region transcription start site region 140001
Gm24145 16 11167105 to 11167267 162 - snRNA gene predicted gene, 24145
Tssr140002 16 11175521 to 11175571 50 - TSS region transcription start site region 140002
Cpgi7961 16 11175522 to 11177145 1623 CpG island CpG island 7961
Tssr140003 16 11176025 to 11176038 13 - TSS region transcription start site region 140003
Tssr140004 16 11176056 to 11176070 14 - TSS region transcription start site region 140004
Tssr137079 16 11176195 to 11176220 25 + TSS region transcription start site region 137079
Tssr140005 16 11176251 to 11176260 9 - TSS region transcription start site region 140005
Tssr140006 16 11176270 to 11176365 95 - TSS region transcription start site region 140006
4930509G22Rik 16 11176342 to 11180565 4223 + lincRNA gene RIKEN cDNA 4930509G22 gene
Gm7638 16 11185100 to 11185896 796 - pseudogene predicted gene 7638
Gm6305 16 11190253 to 11191259 1006 - pseudogene predicted gene 6305
Rsl1d1 16 11193037 to 11203292 10255 - protein coding gene ribosomal L1 domain containing 1
Tssr140007 16 11200379 to 11200384 5 - TSS region transcription start site region 140007
Cpgi7962 16 11202805 to 11203852 1047 CpG island CpG island 7962
Tssr140008 16 11203259 to 11203312 53 - TSS region transcription start site region 140008
Tssr137080 16 11203375 to 11203448 73 + TSS region transcription start site region 137080
2610020C07Rik 16 11203383 to 11225796 22413 + antisense lncRNA gene RIKEN cDNA 2610020C07 gene
Gspt1 16 11219292 to 11254325 35033 - protein coding gene G1 to S phase transition 1
Tssr140009 16 11227561 to 11227567 6 - TSS region transcription start site region 140009
Cpgi7963 16 11253204 to 11254840 1636 CpG island CpG island 7963
Tssr140010 16 11253766 to 11253771 5 - TSS region transcription start site region 140010
Tssr140011 16 11253982 to 11254045 63 - TSS region transcription start site region 140011
Tssr140012 16 11254096 to 11254107 11 - TSS region transcription start site region 140012
Tssr140013 16 11254145 to 11254158 13 - TSS region transcription start site region 140013
Tssr140014 16 11254161 to 11254246 85 - TSS region transcription start site region 140014
Tssr140015 16 11254250 to 11254264 14 - TSS region transcription start site region 140015
Tssr140016 16 11254268 to 11254303 35 - TSS region transcription start site region 140016
Tssr140017 16 11254309 to 11254336 27 - TSS region transcription start site region 140017
Tssr140018 16 11254342 to 11254352 10 - TSS region transcription start site region 140018
Tssr140019 16 11254366 to 11254375 9 - TSS region transcription start site region 140019
Mir1945 16 11254368 to 11254445 77 - miRNA gene microRNA 1945
Tssr140020 16 11254432 to 11254448 16 - TSS region transcription start site region 140020
Tssr137081 16 11254492 to 11254519 27 + TSS region transcription start site region 137081
Tssr140021 16 11288292 to 11288318 26 - TSS region transcription start site region 140021
Tnfrsf17 16 11313812 to 11320074 6262 + protein coding gene tumor necrosis factor receptor superfamily, member 17
Cpgi7964 16 11322557 to 11323612 1055 CpG island CpG island 7964
Tssr137082 16 11322876 to 11322911 35 + TSS region transcription start site region 137082
Snx29 16 11322908 to 11755472 432564 + protein coding gene sorting nexin 29
Tssr137083 16 11322915 to 11322930 15 + TSS region transcription start site region 137083
Tssr140022 16 11343405 to 11343450 45 - TSS region transcription start site region 140022
Tssr137084 16 11361078 to 11361096 18 + TSS region transcription start site region 137084
Tssr140023 16 11365773 to 11365778 5 - TSS region transcription start site region 140023
A7300091P13Rik 16 11387259 to 11389777 2518 unclassified gene RIKEN cDNA A7300091P13 gene
Tssr137085 16 11387593 to 11387607 14 + TSS region transcription start site region 137085
Gm18868 16 11393047 to 11394840 1793 + pseudogene predicted gene, 18868
Tssr137086 16 11397099 to 11397104 5 + TSS region transcription start site region 137086
Tssr137087 16 11397193 to 11397217 24 + TSS region transcription start site region 137087
Tssr137088 16 11398269 to 11398296 27 + TSS region transcription start site region 137088
Tssr137089 16 11399597 to 11399611 14 + TSS region transcription start site region 137089
Tssr137090 16 11399620 to 11399639 19 + TSS region transcription start site region 137090
Tssr137091 16 11401172 to 11401193 21 + TSS region transcription start site region 137091
Tssr137092 16 11405676 to 11405713 37 + TSS region transcription start site region 137092
Tssr137093 16 11406618 to 11406675 57 + TSS region transcription start site region 137093
Tssr137094 16 11406777 to 11406789 12 + TSS region transcription start site region 137094
Tssr137095 16 11420489 to 11420576 87 + TSS region transcription start site region 137095
Tssr137096 16 11420586 to 11420598 12 + TSS region transcription start site region 137096
Tssr137097 16 11420693 to 11420724 31 + TSS region transcription start site region 137097
Tssr137098 16 11420726 to 11420744 18 + TSS region transcription start site region 137098
Tssr140024 16 11442592 to 11442600 8 - TSS region transcription start site region 140024
Tssr137099 16 11447285 to 11447296 11 + TSS region transcription start site region 137099
Tssr137100 16 11447305 to 11447314 9 + TSS region transcription start site region 137100
Tssr140025 16 11456298 to 11456300 2 - TSS region transcription start site region 140025
Tssr4796 16 11456610 to 11456626 16 + TSS region transcription start site region 4796
Tssr140026 16 11461630 to 11461636 6 - TSS region transcription start site region 140026
Tssr137101 16 11461830 to 11461842 12 + TSS region transcription start site region 137101
Tssr137102 16 11461845 to 11461862 17 + TSS region transcription start site region 137102
Tssr137103 16 11461905 to 11461912 7 + TSS region transcription start site region 137103
Gm15897 16 11494821 to 11496306 1485 - pseudogene predicted gene 15897
Tssr137104 16 11500705 to 11500712 7 + TSS region transcription start site region 137104
5830487K18Rik 16 11549741 to 11551159 1418 unclassified gene RIKEN cDNA 5830487K18 gene
Gm32100 16 11583706 to 11588531 4825 + lncRNA gene predicted gene, 32100
Tssr137105 16 11584508 to 11584513 5 + TSS region transcription start site region 137105
Tssr137106 16 11615880 to 11615902 22 + TSS region transcription start site region 137106
Dice1 16 11616382 to 11616494 112 QTL determination of interleukin 4 commitment 1
D16Mit81 16 11616382 to 11616494 112 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 81
Tssr137107 16 11632081 to 11632085 4 + TSS region transcription start site region 137107
Tssr140027 16 11633171 to 11633177 6 - TSS region transcription start site region 140027
Tssr137108 16 11644708 to 11644749 41 + TSS region transcription start site region 137108
Tssr137109 16 11656117 to 11656137 20 + TSS region transcription start site region 137109
Tssr137110 16 11656144 to 11656155 11 + TSS region transcription start site region 137110
Gm4279 16 11688169 to 11691857 3688 - antisense lncRNA gene predicted gene 4279
Tssr137111 16 11778448 to 11778465 17 + TSS region transcription start site region 137111
4833415N18Rik 16 11779702 to 11781501 1799 + lincRNA gene RIKEN cDNA 4833415N18 gene
Cpped1 16 11803721 to 11909445 105724 - protein coding gene calcineurin-like phosphoesterase domain containing 1
Tssr140028 16 11804985 to 11804998 13 - TSS region transcription start site region 140028
Gm9961 16 11901364 to 11930594 29230 + lincRNA gene predicted gene 9961
Cpgi7965 16 11909004 to 11909468 464 CpG island CpG island 7965
Tssr140029 16 11909337 to 11909353 16 - TSS region transcription start site region 140029
Tssr140030 16 11909356 to 11909379 23 - TSS region transcription start site region 140030
Tssr140031 16 11909383 to 11909390 7 - TSS region transcription start site region 140031
Tssr140032 16 11909405 to 11909429 24 - TSS region transcription start site region 140032
Gm32278 16 11978665 to 11983997 5332 - lncRNA gene predicted gene, 32278
Cpgi7966 16 11983142 to 11985374 2232 CpG island CpG island 7966
Tssr137112 16 11984107 to 11984153 46 + TSS region transcription start site region 137112
Shisa9 16 11984113 to 12270902 286789 + protein coding gene shisa family member 9
Tssr137113 16 11984156 to 11984170 14 + TSS region transcription start site region 137113
Tssr137114 16 11984361 to 11984382 21 + TSS region transcription start site region 137114
Tssr137115 16 11984389 to 11984422 33 + TSS region transcription start site region 137115
D16Mit100 16 12095172 to 12095314 142 DNA segment DNA segment, Chr 16, Massachusetts Institute of Technology 100
Tssr137116 16 12261264 to 12261266 2 + TSS region transcription start site region 137116