Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:97877624-99623118

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546 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cal5 15 94974879 to 99363692 4388813 heritable phenotypic marker caracul like 5
Vdr 15 97854427 to 97908296 53869 - protein coding gene vitamin D (1,25-dihydroxyvitamin D3) receptor
Tssr136184 15 97884926 to 97884945 19 - TSS region transcription start site region 136184
Cpgi7637 15 97907830 to 97908860 1030 CpG island CpG island 7637
Tssr136185 15 97908261 to 97908316 55 - TSS region transcription start site region 136185
Tssr132905 15 97908408 to 97908436 28 + TSS region transcription start site region 132905
Tssr136186 15 97910602 to 97910617 15 - TSS region transcription start site region 136186
Tssr136187 15 97910622 to 97910641 19 - TSS region transcription start site region 136187
Gm22202 15 97935285 to 97935595 310 + unclassified non-coding RNA gene predicted gene, 22202
D15Mit193 15 97941759 to 97941887 128 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 193
D15Mit149 15 97941786 to 97941909 123 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 149
D15Jpk1 15 97943148 to 97943310 162 DNA segment DNA segment, Chr 15, Japan, Kominami 1
Cpgi7638 15 97963742 to 97964884 1142 CpG island CpG island 7638
Tssr136188 15 97964034 to 97964077 43 - TSS region transcription start site region 136188
Tmem106c 15 97964200 to 97970275 6075 + protein coding gene transmembrane protein 106C
Tssr132906 15 97964220 to 97964271 51 + TSS region transcription start site region 132906
Tssr132907 15 97964277 to 97964306 29 + TSS region transcription start site region 132907
Tssr132908 15 97964311 to 97964326 15 + TSS region transcription start site region 132908
Tssr132909 15 97969814 to 97969833 19 + TSS region transcription start site region 132909
Col2a1 15 97975602 to 98004695 29093 - protein coding gene collagen, type II, alpha 1
Tssr132910 15 97975603 to 97975630 27 + TSS region transcription start site region 132910
Tssr136189 15 97975668 to 97975687 19 - TSS region transcription start site region 136189
Tssr136190 15 97975699 to 97975717 18 - TSS region transcription start site region 136190
Tssr136191 15 97975912 to 97975921 9 - TSS region transcription start site region 136191
Tssr136192 15 97976018 to 97976051 33 - TSS region transcription start site region 136192
Tssr136193 15 97976060 to 97976068 8 - TSS region transcription start site region 136193
Tssr136194 15 97976108 to 97976119 11 - TSS region transcription start site region 136194
Tssr136195 15 97976124 to 97976142 18 - TSS region transcription start site region 136195
Tssr136196 15 97976143 to 97976154 11 - TSS region transcription start site region 136196
Tssr136197 15 97976156 to 97976172 16 - TSS region transcription start site region 136197
Tssr136198 15 97976678 to 97976696 18 - TSS region transcription start site region 136198
Tssr136199 15 97976724 to 97976735 11 - TSS region transcription start site region 136199
Tssr136200 15 97976742 to 97976760 18 - TSS region transcription start site region 136200
Tssr136201 15 97976798 to 97976816 18 - TSS region transcription start site region 136201
Tssr136202 15 97976852 to 97976878 26 - TSS region transcription start site region 136202
Tssr4707 15 97976888 to 97976895 7 - TSS region transcription start site region 4707
Tssr136203 15 97977277 to 97977301 24 - TSS region transcription start site region 136203
Tssr136204 15 97977370 to 97977389 19 - TSS region transcription start site region 136204
Tssr136205 15 97977833 to 97977847 14 - TSS region transcription start site region 136205
Tssr136206 15 97977872 to 97977888 16 - TSS region transcription start site region 136206
Tssr136207 15 97977902 to 97977920 18 - TSS region transcription start site region 136207
Tssr4708 15 97979212 to 97979239 27 + TSS region transcription start site region 4708
Tssr132911 15 97984186 to 97984188 2 + TSS region transcription start site region 132911
Pgia9 15 97987052 to 97987160 108 QTL proteoglycan induced arthritis 9
Cia37 15 97987052 to 97987160 108 QTL collagen induced arthritis QTL 37
D15Mit41 15 97987052 to 97987160 108 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 41
D15Mit43 15 97990574 to 97990774 200 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 43
Tssr4709 15 97995601 to 97995603 2 - TSS region transcription start site region 4709
Tssr4710 15 97995624 to 97995635 11 - TSS region transcription start site region 4710
Gm46536 15 97996153 to 97997674 1521 + lncRNA gene predicted gene, 46536
Tssr136208 15 97997590 to 97997597 7 - TSS region transcription start site region 136208
Cpgi7639 15 97999660 to 97999979 319 CpG island CpG island 7639
Cpgi7640 15 98001704 to 98002405 701 CpG island CpG island 7640
Cpgi7641 15 98003149 to 98003334 185 CpG island CpG island 7641
Cpgi7642 15 98003614 to 98003953 339 CpG island CpG island 7642
Cpgi7643 15 98004145 to 98005060 915 CpG island CpG island 7643
Tssr136209 15 98004634 to 98004652 18 - TSS region transcription start site region 136209
Tssr136210 15 98004666 to 98004682 16 - TSS region transcription start site region 136210
Tssr136211 15 98004699 to 98004708 9 - TSS region transcription start site region 136211
Tssr132912 15 98004749 to 98004751 2 + TSS region transcription start site region 132912
Gm41395 15 98029216 to 98036849 7633 - lncRNA gene predicted gene, 41395
Senp1 15 98038744 to 98093744 55000 - protein coding gene SUMO1/sentrin specific peptidase 1
Gm25668 15 98069752 to 98069880 128 + snoRNA gene predicted gene, 25668
Tssr136212 15 98074285 to 98074289 4 - TSS region transcription start site region 136212
Tssr136213 15 98085581 to 98085586 5 - TSS region transcription start site region 136213
Tssr132913 15 98092569 to 98092603 34 + TSS region transcription start site region 132913
Pfkm 15 98092589 to 98132447 39858 + protein coding gene phosphofructokinase, muscle
Cpgi7644 15 98092613 to 98093818 1205 CpG island CpG island 7644
Tssr136214 15 98093088 to 98093137 49 - TSS region transcription start site region 136214
Gm26513 15 98093101 to 98093574 473 + antisense lncRNA gene predicted gene, 26513
Tssr136215 15 98093245 to 98093260 15 - TSS region transcription start site region 136215
Tssr136216 15 98093274 to 98093294 20 - TSS region transcription start site region 136216
Tssr136217 15 98093297 to 98093324 27 - TSS region transcription start site region 136217
Tssr136218 15 98093329 to 98093410 81 - TSS region transcription start site region 136218
Tssr132914 15 98093418 to 98093514 96 + TSS region transcription start site region 132914
Tssr136219 15 98093530 to 98093543 13 - TSS region transcription start site region 136219
Tssr132915 15 98093670 to 98093681 11 + TSS region transcription start site region 132915
Tssr136220 15 98098672 to 98098677 5 - TSS region transcription start site region 136220
Cpgi7645 15 98108384 to 98109042 658 CpG island CpG island 7645
Tssr132916 15 98108453 to 98108464 11 + TSS region transcription start site region 132916
Tssr132917 15 98108465 to 98108481 16 + TSS region transcription start site region 132917
Tssr132918 15 98108482 to 98108499 17 + TSS region transcription start site region 132918
Tssr132919 15 98108534 to 98108575 41 + TSS region transcription start site region 132919
Tssr132920 15 98112048 to 98112066 18 + TSS region transcription start site region 132920
Tssr132921 15 98112069 to 98112092 23 + TSS region transcription start site region 132921
Tssr132922 15 98131280 to 98131292 12 + TSS region transcription start site region 132922
Asb8 15 98134637 to 98165601 30964 - protein coding gene ankyrin repeat and SOCS box-containing 8
Cpgi7646 15 98145160 to 98145999 839 CpG island CpG island 7646
Tssr136221 15 98145625 to 98145667 42 - TSS region transcription start site region 136221
Tssr4711 15 98145672 to 98145675 3 - TSS region transcription start site region 4711
Tssr136222 15 98145698 to 98145711 13 - TSS region transcription start site region 136222
Tssr132923 15 98156323 to 98156329 6 + TSS region transcription start site region 132923
Tssr136223 15 98157288 to 98157301 13 - TSS region transcription start site region 136223
Tssr132924 15 98160657 to 98160689 32 + TSS region transcription start site region 132924
Tssr136224 15 98162657 to 98162667 10 - TSS region transcription start site region 136224
Tssr136225 15 98165581 to 98165598 17 - TSS region transcription start site region 136225
Tssr136226 15 98165606 to 98165609 3 - TSS region transcription start site region 136226
Tssr136227 15 98165613 to 98165616 3 - TSS region transcription start site region 136227
Tssr132925 15 98165737 to 98165746 9 + TSS region transcription start site region 132925
Cpgi7647 15 98167389 to 98168801 1412 CpG island CpG island 7647
Ccdc184 15 98167806 to 98170134 2328 + protein coding gene coiled-coil domain containing 184
Tssr132926 15 98167816 to 98167873 57 + TSS region transcription start site region 132926
Tssr132927 15 98167892 to 98167910 18 + TSS region transcription start site region 132927
Tssr132928 15 98167923 to 98167934 11 + TSS region transcription start site region 132928
Tssr132929 15 98167937 to 98167992 55 + TSS region transcription start site region 132929
Tssr132930 15 98168229 to 98168268 39 + TSS region transcription start site region 132930
Tssr132931 15 98168273 to 98168290 17 + TSS region transcription start site region 132931
Tssr132932 15 98168301 to 98168316 15 + TSS region transcription start site region 132932
Tssr132933 15 98168663 to 98168679 16 + TSS region transcription start site region 132933
Tssr136228 15 98170454 to 98170467 13 - TSS region transcription start site region 136228
Tssr136229 15 98170501 to 98170519 18 - TSS region transcription start site region 136229
Tssr132934 15 98172044 to 98172051 7 + TSS region transcription start site region 132934
Gm33909 15 98180478 to 98195364 14886 + lncRNA gene predicted gene, 33909
Cpgi7648 15 98181017 to 98181653 636 CpG island CpG island 7648
Olfr288 15 98186013 to 98195542 9529 - protein coding gene olfactory receptor 288
Gm44579 15 98186017 to 98220977 34960 - unclassified non-coding RNA gene predicted gene 44579
Olfr287 15 98206971 to 98221056 14085 - protein coding gene olfactory receptor 287
Olfr286 15 98226675 to 98234450 7775 - protein coding gene olfactory receptor 286
H1fnt 15 98255986 to 98257293 1307 - protein coding gene H1 histone family, member N, testis-specific
Cpgi7649 15 98256763 to 98257183 420 CpG island CpG island 7649
Tssr136230 15 98257296 to 98257312 16 - TSS region transcription start site region 136230
Tssr136231 15 98257409 to 98257432 23 - TSS region transcription start site region 136231
Tssr132935 15 98265582 to 98265602 20 + TSS region transcription start site region 132935
Gm33967 15 98265589 to 98286206 20617 + lncRNA gene predicted gene, 33967
Zfp641 15 98285585 to 98296161 10576 - protein coding gene zinc finger protein 641
Cpgi7650 15 98295437 to 98296496 1059 CpG island CpG island 7650
Tssr136232 15 98296114 to 98296157 43 - TSS region transcription start site region 136232
Olfr285 15 98312589 to 98313548 959 - protein coding gene olfactory receptor 285
Olfr284 15 98340022 to 98340939 917 - protein coding gene olfactory receptor 284
Cpgi7651 15 98378110 to 98378389 279 CpG island CpG island 7651
Olfr283 15 98378179 to 98379108 929 - protein coding gene olfactory receptor 283
Gm49443 15 98384007 to 98384267 260 + pseudogene predicted gene, 49443
Tssr132936 15 98398413 to 98398424 11 + TSS region transcription start site region 132936
Tssr132937 15 98398436 to 98398450 14 + TSS region transcription start site region 132937
1700031M16Rik 15 98398445 to 98416135 17690 + protein coding gene RIKEN cDNA 1700031M16 gene
Gm21022 15 98419951 to 98421160 1209 + pseudogene predicted gene, 21022
Olfr282 15 98437470 to 98438397 927 + protein coding gene olfactory receptor 282
Gm6979 15 98450358 to 98450844 486 + pseudogene predicted gene 6979
Cpgi7652 15 98456278 to 98456806 528 CpG island CpG island 7652
Olfr281 15 98456312 to 98457247 935 + protein coding gene olfactory receptor 281
Olfr240-ps1 15 98471419 to 98471885 466 + pseudogene olfactory receptor 240, pseudogene 1
Olfr280-ps1 15 98475195 to 98475484 289 + pseudogene olfactory receptor 280, pseudogene 1
Lalba 15 98480400 to 98482721 2321 - protein coding gene lactalbumin, alpha
Tssr136233 15 98480663 to 98480680 17 - TSS region transcription start site region 136233
Tssr132938 15 98481525 to 98481532 7 + TSS region transcription start site region 132938
Tssr136234 15 98481967 to 98481970 3 - TSS region transcription start site region 136234
Tssr136235 15 98482183 to 98482193 10 - TSS region transcription start site region 136235
Tssr136236 15 98482207 to 98482231 24 - TSS region transcription start site region 136236
Tssr136237 15 98482686 to 98482705 19 - TSS region transcription start site region 136237
Tssr136238 15 98482731 to 98482742 11 - TSS region transcription start site region 136238
Tssr136239 15 98482777 to 98482784 7 - TSS region transcription start site region 136239
Tssr132939 15 98492397 to 98492402 5 + TSS region transcription start site region 132939
Olfr279 15 98497474 to 98498406 932 + protein coding gene olfactory receptor 279
Cpgi7653 15 98497612 to 98498382 770 CpG island CpG island 7653
Olfr278-ps1 15 98499405 to 98499642 237 + pseudogene olfactory receptor 278, pseudogene 1
Cpgi7654 15 98510575 to 98510851 276 CpG island CpG island 7654
Kansl2 15 98517658 to 98534264 16606 - protein coding gene KAT8 regulatory NSL complex subunit 2
Snora34 15 98519717 to 98519834 117 - snoRNA gene small nucleolar RNA, H/ACA box 34
Mir1291 15 98519762 to 98519878 116 - miRNA gene microRNA 1291
Tssr136240 15 98523765 to 98523793 28 - TSS region transcription start site region 136240
Snora2b 15 98526348 to 98526459 111 - snoRNA gene small nucleolar RNA, H/ACA box 2B
Tssr136241 15 98529040 to 98529043 3 - TSS region transcription start site region 136241
Tssr132940 15 98532595 to 98532612 17 + TSS region transcription start site region 132940
Cpgi7655 15 98533225 to 98534552 1327 CpG island CpG island 7655
Tssr136242 15 98533932 to 98533950 18 - TSS region transcription start site region 136242
2610028H08Rik 15 98534003 to 98534746 743 unclassified gene RIKEN cDNA 2610028H08 gene
Tssr136243 15 98534231 to 98534305 74 - TSS region transcription start site region 136243
Tssr132941 15 98534499 to 98534537 38 + TSS region transcription start site region 132941
Tssr132942 15 98541384 to 98541389 5 + TSS region transcription start site region 132942
Tssr136244 15 98542621 to 98542625 4 - TSS region transcription start site region 136244
Ccnt1 15 98542768 to 98567772 25004 - protein coding gene cyclin T1
Tssr136245 15 98543907 to 98543924 17 - TSS region transcription start site region 136245
Tssr136246 15 98543972 to 98543989 17 - TSS region transcription start site region 136246
Tssr136247 15 98564438 to 98564442 4 - TSS region transcription start site region 136247
Cpgi7656 15 98567105 to 98568253 1148 CpG island CpG island 7656
Tssr132943 15 98567288 to 98567328 40 + TSS region transcription start site region 132943
9330020H09Rik 15 98567324 to 98569583 2259 + antisense lncRNA gene RIKEN cDNA 9330020H09 gene
Tssr136248 15 98567509 to 98567516 7 - TSS region transcription start site region 136248
Tssr136249 15 98567562 to 98567573 11 - TSS region transcription start site region 136249
Tssr136250 15 98567589 to 98567620 31 - TSS region transcription start site region 136250
Tssr136251 15 98567630 to 98567748 118 - TSS region transcription start site region 136251
Tssr136252 15 98567762 to 98567776 14 - TSS region transcription start site region 136252
Tssr132944 15 98567961 to 98567980 19 + TSS region transcription start site region 132944
Tssr132945 15 98567996 to 98568018 22 + TSS region transcription start site region 132945
Tssr132946 15 98568022 to 98568036 14 + TSS region transcription start site region 132946
4930415O20Rik 15 98571004 to 98589580 18576 + protein coding gene RIKEN cDNA 4930415O20 gene
Tssr132947 15 98571007 to 98571026 19 + TSS region transcription start site region 132947
Tssr132948 15 98571040 to 98571045 5 + TSS region transcription start site region 132948
Tssr132949 15 98571049 to 98571059 10 + TSS region transcription start site region 132949
Adcy6 15 98589973 to 98610076 20103 - protein coding gene adenylate cyclase 6
Gm29331 15 98589990 to 98591090 1100 + antisense lncRNA gene predicted gene 29331
Tssr136253 15 98593638 to 98593641 3 - TSS region transcription start site region 136253
Cpgi7657 15 98604277 to 98604732 455 CpG island CpG island 7657
D15Bwg0340e 15 98606432 to 98606707 275 DNA segment DNA segment, Chr 15, Brigham & Women's Genetics 0340 expressed
Tssr136254 15 98607483 to 98607494 11 - TSS region transcription start site region 136254
Tssr136255 15 98607611 to 98607638 27 - TSS region transcription start site region 136255
Cpgi7658 15 98608733 to 98610143 1410 CpG island CpG island 7658
Tssr136256 15 98609029 to 98609046 17 - TSS region transcription start site region 136256
Tssr136257 15 98609314 to 98609344 30 - TSS region transcription start site region 136257
Tssr136258 15 98609402 to 98609424 22 - TSS region transcription start site region 136258