Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:96380160-99910999

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966 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cal5 15 94974879 to 99363692 4388813 heritable phenotypic marker caracul like 5
Arid2 15 96287518 to 96404992 117474 + protein coding gene AT rich interactive domain 2 (ARID, RFX-like)
Tssr132827 15 96402993 to 96403023 30 + TSS region transcription start site region 132827
Gm25397 15 96404858 to 96404949 91 + miRNA gene predicted gene, 25397
Scaf11 15 96411699 to 96460843 49144 - protein coding gene SR-related CTD-associated factor 11
Tssr4705 15 96457232 to 96457246 14 + TSS region transcription start site region 4705
Cpgi7601 15 96459827 to 96461817 1990 CpG island CpG island 7601
Tssr132828 15 96460208 to 96460225 17 + TSS region transcription start site region 132828
Tssr136024 15 96460711 to 96460742 31 - TSS region transcription start site region 136024
Tssr136025 15 96460743 to 96460834 91 - TSS region transcription start site region 136025
Tssr136026 15 96460838 to 96460856 18 - TSS region transcription start site region 136026
Tssr136027 15 96460871 to 96460926 55 - TSS region transcription start site region 136027
Tssr136028 15 96460935 to 96460993 58 - TSS region transcription start site region 136028
Tssr132829 15 96461437 to 96461454 17 + TSS region transcription start site region 132829
Tssr136029 15 96474447 to 96474468 21 - TSS region transcription start site region 136029
Tssr136030 15 96474722 to 96474734 12 - TSS region transcription start site region 136030
Tssr136031 15 96474736 to 96474755 19 - TSS region transcription start site region 136031
Tssr132830 15 96474884 to 96474891 7 + TSS region transcription start site region 132830
Cpgi7602 15 96478530 to 96478729 199 CpG island CpG island 7602
Gm41392 15 96494472 to 96498764 4292 + lincRNA gene predicted gene, 41392
Tssr136032 15 96507195 to 96507201 6 - TSS region transcription start site region 136032
Gm32406 15 96507296 to 96518387 11091 + lncRNA gene predicted gene, 32406
Slc38a1 15 96571418 to 96642913 71495 - protein coding gene solute carrier family 38, member 1
Tssr136033 15 96576437 to 96576453 16 - TSS region transcription start site region 136033
Gm32457 15 96579969 to 96581764 1795 - lncRNA gene predicted gene, 32457
Tssr136034 15 96597560 to 96597569 9 - TSS region transcription start site region 136034
Tssr136035 15 96615411 to 96615424 13 - TSS region transcription start site region 136035
Tssr136036 15 96638185 to 96638199 14 - TSS region transcription start site region 136036
Tssr136037 15 96638206 to 96638222 16 - TSS region transcription start site region 136037
Tssr132831 15 96638490 to 96638512 22 + TSS region transcription start site region 132831
Tssr132832 15 96638575 to 96638582 7 + TSS region transcription start site region 132832
Tssr132833 15 96638671 to 96638675 4 + TSS region transcription start site region 132833
Tssr136038 15 96639727 to 96639744 17 - TSS region transcription start site region 136038
Tssr136039 15 96640120 to 96640124 4 - TSS region transcription start site region 136039
Tssr136040 15 96640619 to 96640623 4 - TSS region transcription start site region 136040
Tssr136041 15 96640789 to 96640825 36 - TSS region transcription start site region 136041
Cpgi7603 15 96641020 to 96643454 2434 CpG island CpG island 7603
Tssr132834 15 96641055 to 96641070 15 + TSS region transcription start site region 132834
Tssr136042 15 96641160 to 96641252 92 - TSS region transcription start site region 136042
Tssr132835 15 96641308 to 96641328 20 + TSS region transcription start site region 132835
Tssr136043 15 96641459 to 96641474 15 - TSS region transcription start site region 136043
Tssr136044 15 96641482 to 96641556 74 - TSS region transcription start site region 136044
Tssr136045 15 96641564 to 96641575 11 - TSS region transcription start site region 136045
Tssr136046 15 96641619 to 96641631 12 - TSS region transcription start site region 136046
Tssr132836 15 96641629 to 96641640 11 + TSS region transcription start site region 132836
Tssr132837 15 96641667 to 96641747 80 + TSS region transcription start site region 132837
Tssr136047 15 96642186 to 96642197 11 - TSS region transcription start site region 136047
Tssr136048 15 96642203 to 96642234 31 - TSS region transcription start site region 136048
Tssr136049 15 96642236 to 96642271 35 - TSS region transcription start site region 136049
Tssr136050 15 96642281 to 96642310 29 - TSS region transcription start site region 136050
Tssr136051 15 96642311 to 96642347 36 - TSS region transcription start site region 136051
Tssr132838 15 96642459 to 96642497 38 + TSS region transcription start site region 132838
Tssr132839 15 96642509 to 96642525 16 + TSS region transcription start site region 132839
Tssr132840 15 96642561 to 96642571 10 + TSS region transcription start site region 132840
Tssr132841 15 96642588 to 96642599 11 + TSS region transcription start site region 132841
Tssr136052 15 96642619 to 96642672 53 - TSS region transcription start site region 136052
Tssr136053 15 96642757 to 96642778 21 - TSS region transcription start site region 136053
Tssr136054 15 96642800 to 96642819 19 - TSS region transcription start site region 136054
Tssr136055 15 96642852 to 96642875 23 - TSS region transcription start site region 136055
Tssr136056 15 96642883 to 96642984 101 - TSS region transcription start site region 136056
Tssr136057 15 96643124 to 96643137 13 - TSS region transcription start site region 136057
Tssr132842 15 96643225 to 96643272 47 + TSS region transcription start site region 132842
Tssr136058 15 96643264 to 96643293 29 - TSS region transcription start site region 136058
Gm46503 15 96648835 to 96649408 573 - pseudogene predicted gene, 46503
Tssr132843 15 96654949 to 96655014 65 + TSS region transcription start site region 132843
Tssr136059 15 96655532 to 96655534 2 - TSS region transcription start site region 136059
Gm22045 15 96671793 to 96671900 107 + snRNA gene predicted gene, 22045
Slc38a2 15 96687392 to 96699724 12332 - protein coding gene solute carrier family 38, member 2
Tssr136060 15 96688324 to 96688343 19 - TSS region transcription start site region 136060
Tssr136061 15 96689925 to 96689940 15 - TSS region transcription start site region 136061
Tssr136062 15 96691194 to 96691208 14 - TSS region transcription start site region 136062
Cpgi7604 15 96698434 to 96700610 2176 CpG island CpG island 7604
Tssr136063 15 96698699 to 96698706 7 - TSS region transcription start site region 136063
Tssr136064 15 96698749 to 96698764 15 - TSS region transcription start site region 136064
Tssr136065 15 96698776 to 96698792 16 - TSS region transcription start site region 136065
Tssr136066 15 96698796 to 96698808 12 - TSS region transcription start site region 136066
Tssr136067 15 96698809 to 96698855 46 - TSS region transcription start site region 136067
Tssr136068 15 96698910 to 96698914 4 - TSS region transcription start site region 136068
Tssr132844 15 96699033 to 96699044 11 + TSS region transcription start site region 132844
Tssr136069 15 96699121 to 96699137 16 - TSS region transcription start site region 136069
Tssr136070 15 96699678 to 96699684 6 - TSS region transcription start site region 136070
Tssr136071 15 96699698 to 96699717 19 - TSS region transcription start site region 136071
Tssr136072 15 96699731 to 96699734 3 - TSS region transcription start site region 136072
Tssr132845 15 96700084 to 96700093 9 + TSS region transcription start site region 132845
Gm38144 15 96700173 to 96700637 464 + unclassified gene predicted gene, 38144
Tssr136073 15 96702547 to 96702556 9 - TSS region transcription start site region 136073
Cpgi7605 15 96709251 to 96710315 1064 CpG island CpG island 7605
Tssr136074 15 96709627 to 96709643 16 - TSS region transcription start site region 136074
Tssr132846 15 96709889 to 96709933 44 + TSS region transcription start site region 132846
Tssr132847 15 96709956 to 96709971 15 + TSS region transcription start site region 132847
Tssr132848 15 96710016 to 96710028 12 + TSS region transcription start site region 132848
Tssr132849 15 96710371 to 96710376 5 + TSS region transcription start site region 132849
Cpgi7606 15 96736342 to 96736519 177 CpG island CpG island 7606
Tssr136075 15 96747711 to 96747727 16 - TSS region transcription start site region 136075
Gm8888 15 96766766 to 96767078 312 - pseudogene predicted gene 8888
Cpgi7607 15 96766801 to 96767128 327 CpG island CpG island 7607
Cpgi7608 15 96793328 to 96793525 197 CpG island CpG island 7608
Gm32564 15 96818707 to 96833419 14712 + lncRNA gene predicted gene, 32564
Gm32677 15 96838547 to 96843951 5404 + lncRNA gene predicted gene, 32677
Cpgi7609 15 96899932 to 96900106 174 CpG island CpG island 7609
Rpl10a-ps3 15 96922760 to 96923405 645 - pseudogene ribosomal protein L10A, pseudogene 3
Cpgi7610 15 96936636 to 96936897 261 CpG island CpG island 7610
Tssr136076 15 96953517 to 96953528 11 - TSS region transcription start site region 136076
Tssr136077 15 96953536 to 96953550 14 - TSS region transcription start site region 136077
Cpgi7611 15 96953568 to 96954156 588 CpG island CpG island 7611
Slc38a4 15 96994823 to 97055956 61133 - protein coding gene solute carrier family 38, member 4
Tssr136078 15 96996297 to 96996324 27 - TSS region transcription start site region 136078
Tssr136079 15 96996973 to 96996984 11 - TSS region transcription start site region 136079
Tssr136080 15 96997084 to 96997090 6 - TSS region transcription start site region 136080
Tssr136081 15 97008682 to 97008688 6 - TSS region transcription start site region 136081
Tssr136082 15 97008700 to 97008716 16 - TSS region transcription start site region 136082
Tssr136083 15 97008725 to 97008744 19 - TSS region transcription start site region 136083
Tssr136084 15 97008897 to 97008908 11 - TSS region transcription start site region 136084
Tssr136085 15 97008986 to 97009007 21 - TSS region transcription start site region 136085
Tssr136086 15 97010140 to 97010160 20 - TSS region transcription start site region 136086
Tssr136087 15 97010189 to 97010201 12 - TSS region transcription start site region 136087
D15Mit161 15 97011059 to 97011157 98 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 161
Imrfq2 15 97011059 to 97011157 98 QTL immune response to Factor IX QTL 2
D15Mit161.1 15 97011163 to 97011289 126 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 161.1
Tssr136088 15 97013475 to 97013495 20 - TSS region transcription start site region 136088
Tssr136089 15 97013564 to 97013575 11 - TSS region transcription start site region 136089
Tssr136090 15 97013585 to 97013608 23 - TSS region transcription start site region 136090
Tssr136091 15 97013681 to 97013687 6 - TSS region transcription start site region 136091
Tssr136092 15 97019470 to 97019482 12 - TSS region transcription start site region 136092
Tssr136093 15 97019527 to 97019538 11 - TSS region transcription start site region 136093
Tssr136094 15 97019840 to 97019847 7 - TSS region transcription start site region 136094
Tssr136095 15 97019878 to 97019883 5 - TSS region transcription start site region 136095
Tssr136096 15 97019891 to 97019902 11 - TSS region transcription start site region 136096
Tssr136097 15 97019924 to 97019937 13 - TSS region transcription start site region 136097
Tssr136098 15 97019940 to 97019972 32 - TSS region transcription start site region 136098
Tssr136099 15 97020079 to 97020086 7 - TSS region transcription start site region 136099
Tssr136100 15 97020323 to 97020336 13 - TSS region transcription start site region 136100
Tssr136101 15 97020343 to 97020358 15 - TSS region transcription start site region 136101
Tssr136102 15 97029274 to 97029277 3 - TSS region transcription start site region 136102
Tssr136103 15 97031205 to 97031221 16 - TSS region transcription start site region 136103
Gm32840 15 97039238 to 97106904 67666 + lncRNA gene predicted gene, 32840
Tssr132850 15 97044171 to 97044189 18 + TSS region transcription start site region 132850
Tssr136104 15 97050083 to 97050099 16 - TSS region transcription start site region 136104
Cpgi7612 15 97054392 to 97055199 807 CpG island CpG island 7612
Tssr136105 15 97055886 to 97055907 21 - TSS region transcription start site region 136105
Tssr136106 15 97055942 to 97055964 22 - TSS region transcription start site region 136106
Gm32789 15 97067187 to 97069320 2133 + lncRNA gene predicted gene, 32789
Gm32733 15 97102525 to 97107514 4989 - lncRNA gene predicted gene, 32733
Gm32885 15 97157117 to 97167278 10161 - lincRNA gene predicted gene, 32885
Gm33149 15 97162092 to 97173903 11811 + lncRNA gene predicted gene, 33149
Tssr136107 15 97167231 to 97167250 19 - TSS region transcription start site region 136107
Tssr136108 15 97167260 to 97167267 7 - TSS region transcription start site region 136108
Cpgi7613 15 97173383 to 97173621 238 CpG island CpG island 7613
Gm33253 15 97183012 to 97191329 8317 + lncRNA gene predicted gene, 33253
Gm33205 15 97187415 to 97203772 16357 - lncRNA gene predicted gene, 33205
D15Mit218 15 97234186 to 97234292 106 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 218
Cpgi7614 15 97235689 to 97235862 173 CpG island CpG island 7614
Amigo2 15 97244125 to 97247287 3162 - protein coding gene adhesion molecule with Ig like domain 2
Cpgi7615 15 97245213 to 97245591 378 CpG island CpG island 7615
Tssr132851 15 97245677 to 97245686 9 + TSS region transcription start site region 132851
Cpgi7616 15 97246172 to 97248059 1887 CpG island CpG island 7616
Tssr132852 15 97246958 to 97247004 46 + TSS region transcription start site region 132852
Tssr132853 15 97247011 to 97247052 41 + TSS region transcription start site region 132853
Pced1b 15 97247107 to 97385680 138573 + protein coding gene PC-esterase domain containing 1B
Tssr136109 15 97247242 to 97247257 15 - TSS region transcription start site region 136109
Tssr136110 15 97247306 to 97247315 9 - TSS region transcription start site region 136110
Tssr132854 15 97247391 to 97247448 57 + TSS region transcription start site region 132854
Cpgi7617 15 97253704 to 97254086 382 CpG island CpG island 7617
Gm4383 15 97302352 to 97302974 622 - pseudogene predicted gene 4383
Cpgi7618 15 97323422 to 97324041 619 CpG island CpG island 7618
Gm33325 15 97338169 to 97357453 19284 - lncRNA gene predicted gene, 33325
Tssr136111 15 97338486 to 97338492 6 - TSS region transcription start site region 136111
Cpgi7619 15 97361006 to 97361323 317 CpG island CpG island 7619
Tssr132855 15 97361134 to 97361155 21 + TSS region transcription start site region 132855
Tssr132856 15 97361180 to 97361225 45 + TSS region transcription start site region 132856
Tssr132857 15 97361266 to 97361284 18 + TSS region transcription start site region 132857
Tssr136112 15 97369279 to 97369288 9 - TSS region transcription start site region 136112
Tssr132858 15 97373370 to 97373384 14 + TSS region transcription start site region 132858
Tssr132859 15 97373388 to 97373402 14 + TSS region transcription start site region 132859
Tssr132860 15 97373409 to 97373422 13 + TSS region transcription start site region 132860
Tssr136113 15 97373883 to 97373895 12 - TSS region transcription start site region 136113
Tssr132861 15 97373936 to 97373948 12 + TSS region transcription start site region 132861
Tssr132862 15 97373979 to 97373988 9 + TSS region transcription start site region 132862
Tssr132863 15 97374012 to 97374036 24 + TSS region transcription start site region 132863
Tssr132864 15 97374046 to 97374059 13 + TSS region transcription start site region 132864
Tssr132865 15 97374199 to 97374206 7 + TSS region transcription start site region 132865
Tssr132866 15 97376688 to 97376702 14 + TSS region transcription start site region 132866
Cpgi7620 15 97376840 to 97377311 471 CpG island CpG island 7620
Tssr132867 15 97377158 to 97377175 17 + TSS region transcription start site region 132867
Tssr132868 15 97377180 to 97377196 16 + TSS region transcription start site region 132868
Tssr132869 15 97383958 to 97383972 14 + TSS region transcription start site region 132869
Tssr132870 15 97384596 to 97384633 37 + TSS region transcription start site region 132870
Tssr132871 15 97385450 to 97385454 4 + TSS region transcription start site region 132871
Gm41393 15 97393950 to 97406961 13011 - lncRNA gene predicted gene, 41393
D15Mit48 15 97415753 to 97415885 132 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 48
Cosz3 15 97415753 to 97415885 132 QTL cocaine seizure 3
5830453K13Rik 15 97423892 to 97425614 1722 unclassified gene RIKEN cDNA 5830453K13 gene
Tssr132872 15 97424556 to 97424572 16 + TSS region transcription start site region 132872
Tssr132873 15 97424599 to 97424606 7 + TSS region transcription start site region 132873
Tssr132874 15 97467217 to 97467221 4 + TSS region transcription start site region 132874
Tssr136114 15 97469267 to 97469276 9 - TSS region transcription start site region 136114
Cpgi7621 15 97469306 to 97469464 158 CpG island CpG island 7621
Tssr136115 15 97469706 to 97469733 27 - TSS region transcription start site region 136115
Tssr132875 15 97471739 to 97471748 9 + TSS region transcription start site region 132875
Gm49506 15 97557791 to 97558290 499 - pseudogene predicted gene, 49506