Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:8252643-8923341

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
In(15Rictor;Slc1a3)1Ove 15 6708379 to 8710764 2002385 chromosomal inversion inversion, Chr 15, Paul A Overbeek 1
Cplane1 15 8169106 to 8271158 102052 + protein coding gene ciliogenesis and planar polarity effector 1
Nipbl 15 8290617 to 8444463 153846 - protein coding gene NIPBL cohesin loading factor
Tssr133649 15 8347471 to 8347476 5 - TSS region transcription start site region 133649
Tssr133650 15 8350315 to 8350336 21 - TSS region transcription start site region 133650
Tssr133651 15 8350421 to 8350440 19 - TSS region transcription start site region 133651
Tssr133652 15 8350473 to 8350488 15 - TSS region transcription start site region 133652
Tssr133653 15 8350876 to 8350890 14 - TSS region transcription start site region 133653
Tssr133654 15 8351402 to 8351415 13 - TSS region transcription start site region 133654
Tssr133655 15 8351533 to 8351551 18 - TSS region transcription start site region 133655
Tssr133656 15 8351635 to 8351668 33 - TSS region transcription start site region 133656
Tssr133657 15 8351696 to 8351712 16 - TSS region transcription start site region 133657
Tssr133658 15 8359256 to 8359273 17 - TSS region transcription start site region 133658
Tssr133659 15 8361751 to 8361768 17 - TSS region transcription start site region 133659
Tssr133660 15 8387078 to 8387081 3 - TSS region transcription start site region 133660
Tssr133661 15 8398018 to 8398021 3 - TSS region transcription start site region 133661
Tssr133662 15 8430748 to 8430761 13 - TSS region transcription start site region 133662
AW557046 15 8435112 to 8445863 10751 + protein coding gene expressed sequence AW557046
Tssr133663 15 8436656 to 8436660 4 - TSS region transcription start site region 133663
Cpgi6933 15 8443486 to 8445654 2168 CpG island CpG island 6933
Tssr130591 15 8443605 to 8443636 31 + TSS region transcription start site region 130591
Tssr133664 15 8444164 to 8444209 45 - TSS region transcription start site region 133664
Tssr133665 15 8444218 to 8444246 28 - TSS region transcription start site region 133665
Tssr133666 15 8444435 to 8444448 13 - TSS region transcription start site region 133666
Tssr133667 15 8444449 to 8444506 57 - TSS region transcription start site region 133667
Tssr133668 15 8444609 to 8444668 59 - TSS region transcription start site region 133668
Tssr130592 15 8444733 to 8444749 16 + TSS region transcription start site region 130592
Tssr4546 15 8444865 to 8444877 12 - TSS region transcription start site region 4546
Tssr130593 15 8444965 to 8444973 8 + TSS region transcription start site region 130593
Tssr130594 15 8445410 to 8445420 10 + TSS region transcription start site region 130594
Tssr130595 15 8445565 to 8445570 5 + TSS region transcription start site region 130595
Cpgi6934 15 8445981 to 8446220 239 CpG island CpG island 6934
Tssr130596 15 8446188 to 8446194 6 + TSS region transcription start site region 130596
Tssr133669 15 8465276 to 8465305 29 - TSS region transcription start site region 133669
Tssr133670 15 8465308 to 8465321 13 - TSS region transcription start site region 133670
Gm49247 15 8480871 to 8481945 1074 - lincRNA gene predicted gene, 49247
Gm31282 15 8482119 to 8500343 18224 + lincRNA gene predicted gene, 31282
D15Mit247 15 8501490 to 8501637 147 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-247
Tssr130597 15 8512112 to 8512140 28 + TSS region transcription start site region 130597
Gm49249 15 8512327 to 8532794 20467 + lincRNA gene predicted gene, 49249
Gm2310 15 8518683 to 8519953 1270 - protein coding gene predicted gene 2310
Gm2348 15 8529135 to 8529434 299 - pseudogene predicted pseudogene 2348
Gm49250 15 8529435 to 8529591 156 - pseudogene predicted gene, 49250
Cpgi6935 15 8568782 to 8569743 961 CpG island CpG island 6935
Tssr130598 15 8569964 to 8569979 15 + TSS region transcription start site region 130598
D15Mit224 15 8576710 to 8576826 116 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology 224
Gm46508 15 8582643 to 8593341 10698 + lncRNA gene predicted gene, 46508
Tssr133671 15 8602008 to 8602009 1 - TSS region transcription start site region 133671
AA589642 15 8605450 to 8605851 401 unclassified gene expressed sequence AA589642
Cpgi6936 15 8629620 to 8629906 286 CpG island CpG island 6936
Slc1a3 15 8634124 to 8710764 76640 - protein coding gene solute carrier family 1 (glial high affinity glutamate transporter), member 3
Tssr133672 15 8634861 to 8634884 23 - TSS region transcription start site region 133672
Tssr133673 15 8635267 to 8635278 11 - TSS region transcription start site region 133673
Tssr133674 15 8636033 to 8636039 6 - TSS region transcription start site region 133674
Tssr133675 15 8639189 to 8639190 1 - TSS region transcription start site region 133675
Tssr133676 15 8642281 to 8642292 11 - TSS region transcription start site region 133676
Tssr133677 15 8643223 to 8643231 8 - TSS region transcription start site region 133677
Gm37310 15 8652106 to 8655073 2967 - unclassified gene predicted gene, 37310
E130014H10Rik 15 8664965 to 8667234 2269 unclassified gene RIKEN cDNA E130014H10 gene
Tssr133678 15 8683613 to 8683616 3 - TSS region transcription start site region 133678
Cpgi6937 15 8710193 to 8710643 450 CpG island CpG island 6937
Tssr133679 15 8710444 to 8710498 54 - TSS region transcription start site region 133679
Tssr133680 15 8710734 to 8710760 26 - TSS region transcription start site region 133680
Gm31340 15 8711026 to 8864483 153457 + lncRNA gene predicted gene, 31340
Tssr130599 15 8832279 to 8832293 14 + TSS region transcription start site region 130599
Tssr130600 15 8832321 to 8832333 12 + TSS region transcription start site region 130600
Tssr130601 15 8838067 to 8838082 15 + TSS region transcription start site region 130601
Tssr130602 15 8914095 to 8914115 20 + TSS region transcription start site region 130602
Gm5043 15 8914484 to 8915303 819 + pseudogene predicted gene 5043
Gm5210 15 8917798 to 8929171 11373 - pseudogene predicted gene 5210