Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:80935499-81538964

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Msq1 15 63517797 to 81202235 17684438 QTL MAV-1 susceptibility QTL 1
Tnrc6b 15 80711313 to 80941085 229772 + protein coding gene trinucleotide repeat containing 6b
Tssr132252 15 80937122 to 80937147 25 + TSS region transcription start site region 132252
Mir5113 15 80940039 to 80940120 81 + miRNA gene microRNA 5113
Cpgi7379 15 80948115 to 80948987 872 CpG island CpG island 7379
Tssr132253 15 80948484 to 80948549 65 + TSS region transcription start site region 132253
Adsl 15 80948490 to 80970946 22456 + protein coding gene adenylosuccinate lyase
Tssr132254 15 80952472 to 80952480 8 + TSS region transcription start site region 132254
Gm6612 15 80952505 to 80952899 394 + pseudogene predicted gene 6612
Cpgi7380 15 80977545 to 80978367 822 CpG island CpG island 7380
Tssr132255 15 80977608 to 80977619 11 + TSS region transcription start site region 132255
Sgsm3 15 80977765 to 81012290 34525 + protein coding gene small G protein signaling modulator 3
Tssr132256 15 80977780 to 80977845 65 + TSS region transcription start site region 132256
Tssr132257 15 80977873 to 80977876 3 + TSS region transcription start site region 132257
Gm31462 15 81005407 to 81006410 1003 - antisense lncRNA gene predicted gene, 31462
Mrtfa 15 81012281 to 81190757 178476 - protein coding gene myocardin related transcription factor A
Tssr135448 15 81018077 to 81018117 40 - TSS region transcription start site region 135448
Tssr132258 15 81039639 to 81039646 7 + TSS region transcription start site region 132258
Gm25131 15 81039643 to 81039793 150 + snRNA gene predicted gene, 25131
Tssr132259 15 81044689 to 81044700 11 + TSS region transcription start site region 132259
Tssr135449 15 81045451 to 81045465 14 - TSS region transcription start site region 135449
Tssr135450 15 81045467 to 81045540 73 - TSS region transcription start site region 135450
Tssr135451 15 81067009 to 81067020 11 - TSS region transcription start site region 135451
Tssr135452 15 81067022 to 81067037 15 - TSS region transcription start site region 135452
Tssr135453 15 81070943 to 81070948 5 - TSS region transcription start site region 135453
Tssr135454 15 81104989 to 81104994 5 - TSS region transcription start site region 135454
Tssr135455 15 81104999 to 81105069 70 - TSS region transcription start site region 135455
Tssr135456 15 81111499 to 81111505 6 - TSS region transcription start site region 135456
Gm49522 15 81115033 to 81115845 812 - unclassified gene predicted gene, 49522
Cpgi7381 15 81189929 to 81191319 1390 CpG island CpG island 7381
Tssr132260 15 81190496 to 81190505 9 + TSS region transcription start site region 132260
Tssr135457 15 81190701 to 81190719 18 - TSS region transcription start site region 135457
Tssr135458 15 81190720 to 81190768 48 - TSS region transcription start site region 135458
4930483J18Rik 15 81190853 to 81192757 1904 + lncRNA gene RIKEN cDNA 4930483J18 gene
D15Mit70 15 81202085 to 81202235 150 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 70
Gm49537 15 81208725 to 81209160 435 - pseudogene predicted gene, 49537
Gm31608 15 81217126 to 81229699 12573 + lncRNA gene predicted gene, 31608
Gm31750 15 81229712 to 81230571 859 + lncRNA gene predicted gene, 31750
Mchr1 15 81235499 to 81238964 3465 + protein coding gene melanin-concentrating hormone receptor 1
Cpgi7382 15 81235503 to 81235885 382 CpG island CpG island 7382
Tssr132261 15 81235600 to 81235628 28 + TSS region transcription start site region 132261
8430426J06Rik 15 81242654 to 81251862 9208 - lincRNA gene RIKEN cDNA 8430426J06 gene
cmy2 15 81245519 to 95314546 14069027 heritable phenotypic marker cardiomyopathy 2
Tssr135459 15 81247959 to 81247996 37 - TSS region transcription start site region 135459
Tssr135460 15 81251849 to 81251873 24 - TSS region transcription start site region 135460
Tssr132262 15 81259265 to 81259271 6 + TSS region transcription start site region 132262
Cpgi7383 15 81301240 to 81301416 176 CpG island CpG island 7383
Tssr132263 15 81301768 to 81301777 9 + TSS region transcription start site region 132263
Tssr132264 15 81301791 to 81301803 12 + TSS region transcription start site region 132264
Tssr135461 15 81302232 to 81302247 15 - TSS region transcription start site region 135461
Slc25a17 15 81318921 to 81360765 41844 - protein coding gene solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17
Tssr135462 15 81327302 to 81327328 26 - TSS region transcription start site region 135462
Cpgi7384 15 81360520 to 81361005 485 CpG island CpG island 7384
Tssr135463 15 81360739 to 81360816 77 - TSS region transcription start site region 135463
Tssr135464 15 81360831 to 81360853 22 - TSS region transcription start site region 135464
Tssr135465 15 81364811 to 81364815 4 - TSS region transcription start site region 135465
St13 15 81365044 to 81399694 34650 - protein coding gene suppression of tumorigenicity 13
Tssr135466 15 81365333 to 81365362 29 - TSS region transcription start site region 135466
Tssr135467 15 81374873 to 81374896 23 - TSS region transcription start site region 135467
Tssr135468 15 81380731 to 81380742 11 - TSS region transcription start site region 135468
Tssr135469 15 81392311 to 81392316 5 - TSS region transcription start site region 135469
Tssr135470 15 81398296 to 81398299 3 - TSS region transcription start site region 135470
Cpgi7385 15 81399322 to 81400311 989 CpG island CpG island 7385
Tssr135471 15 81399596 to 81399652 56 - TSS region transcription start site region 135471
Tssr135472 15 81399656 to 81399732 76 - TSS region transcription start site region 135472
Tssr135473 15 81399750 to 81399759 9 - TSS region transcription start site region 135473
Tssr135474 15 81399780 to 81399791 11 - TSS region transcription start site region 135474
Tssr135475 15 81399795 to 81399832 37 - TSS region transcription start site region 135475
Tssr135476 15 81400053 to 81400093 40 - TSS region transcription start site region 135476
Xpnpep3 15 81400132 to 81457476 57344 + protein coding gene X-prolyl aminopeptidase 3, mitochondrial
Tssr132265 15 81400132 to 81400215 83 + TSS region transcription start site region 132265
Dnajb7 15 81407088 to 81408273 1185 - protein coding gene DnaJ heat shock protein family (Hsp40) member B7
Tssr135477 15 81408252 to 81408257 5 - TSS region transcription start site region 135477
Tssr135478 15 81408261 to 81408273 12 - TSS region transcription start site region 135478
Tssr135479 15 81408281 to 81408301 20 - TSS region transcription start site region 135479
Gm17025 15 81415560 to 81419188 3628 - antisense lncRNA gene predicted gene 17025
Tssr135480 15 81421473 to 81421496 23 - TSS region transcription start site region 135480
Tssr135481 15 81421678 to 81421690 12 - TSS region transcription start site region 135481
Cpgi7386 15 81465807 to 81466984 1177 CpG island CpG island 7386
Tssr135482 15 81466043 to 81466057 14 - TSS region transcription start site region 135482
Tssr132266 15 81466309 to 81466322 13 + TSS region transcription start site region 132266
Rbx1 15 81466316 to 81476369 10053 + protein coding gene ring-box 1
Tssr132267 15 81466339 to 81466365 26 + TSS region transcription start site region 132267
Tssr132268 15 81466665 to 81466711 46 + TSS region transcription start site region 132268
Cpgi7387 15 81481259 to 81481453 194 CpG island CpG island 7387
Gm49406 15 81485972 to 81486381 409 - pseudogene predicted gene, 49406
Gm5218 15 81499081 to 81499545 464 - pseudogene predicted gene 5218
Cpgi7388 15 81514166 to 81514356 190 CpG island CpG island 7388
Tssr135483 15 81514260 to 81514281 21 - TSS region transcription start site region 135483
Tssr4662 15 81522093 to 81522104 11 - TSS region transcription start site region 4662
Cpgi7389 15 81522225 to 81523537 1312 CpG island CpG island 7389
Tssr132269 15 81522338 to 81522391 53 + TSS region transcription start site region 132269
Tssr135484 15 81522921 to 81522933 12 - TSS region transcription start site region 135484
Tssr135485 15 81522940 to 81522960 20 - TSS region transcription start site region 135485
Tssr135486 15 81523261 to 81523312 51 - TSS region transcription start site region 135486
Tssr132270 15 81523366 to 81523377 11 + TSS region transcription start site region 132270
Tssr132271 15 81523388 to 81523446 58 + TSS region transcription start site region 132271
Tssr132272 15 81523832 to 81523871 39 + TSS region transcription start site region 132272
Tssr135487 15 81528654 to 81528665 11 - TSS region transcription start site region 135487