Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:80302497-80822507

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacna1i 15 80287238 to 80398279 111041 + protein coding gene calcium channel, voltage-dependent, alpha 1I subunit
Tssr132212 15 80320153 to 80320166 13 + TSS region transcription start site region 132212
Tssr132213 15 80320181 to 80320203 22 + TSS region transcription start site region 132213
Tssr132214 15 80320257 to 80320304 47 + TSS region transcription start site region 132214
Cpgi7372 15 80358859 to 80359078 219 CpG island CpG island 7372
Cpgi7373 15 80369366 to 80369694 328 CpG island CpG island 7373
Cpgi7374 15 80372145 to 80372702 557 CpG island CpG island 7374
Cpgi7375 15 80395046 to 80395572 526 CpG island CpG island 7375
Gm41363 15 80398386 to 80404234 5848 - lncRNA gene predicted gene, 41363
D15Mit95 15 80416786 to 80416914 128 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 95
Gm31369 15 80431571 to 80438603 7032 - lincRNA gene predicted gene, 31369
Enthd1 15 80452240 to 80565156 112916 - protein coding gene ENTH domain containing 1
Gm23220 15 80458038 to 80458174 136 - snoRNA gene predicted gene, 23220
D15Mit214 15 80466108 to 80466232 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 214
Gm19141 15 80475917 to 80477938 2021 + pseudogene predicted gene, 19141
Tssr135436 15 80562497 to 80562507 10 - TSS region transcription start site region 135436
Tssr135437 15 80565123 to 80565128 5 - TSS region transcription start site region 135437
Tssr135438 15 80565134 to 80565147 13 - TSS region transcription start site region 135438
Tssr135439 15 80565150 to 80565167 17 - TSS region transcription start site region 135439
Tssr132215 15 80572424 to 80572435 11 + TSS region transcription start site region 132215
Tssr132216 15 80572455 to 80572460 5 + TSS region transcription start site region 132216
Tssr132217 15 80572469 to 80572480 11 + TSS region transcription start site region 132217
Tssr132218 15 80572494 to 80572499 5 + TSS region transcription start site region 132218
Tssr132219 15 80572537 to 80572560 23 + TSS region transcription start site region 132219
Tssr132220 15 80572576 to 80572601 25 + TSS region transcription start site region 132220
Grap2 15 80572597 to 80652854 80257 + protein coding gene GRB2-related adaptor protein 2
Tssr132221 15 80572606 to 80572617 11 + TSS region transcription start site region 132221
Tssr132222 15 80572674 to 80572681 7 + TSS region transcription start site region 132222
Tssr132223 15 80572682 to 80572692 10 + TSS region transcription start site region 132223
Tssr132224 15 80572712 to 80572713 1 + TSS region transcription start site region 132224
Tssr132225 15 80572801 to 80572825 24 + TSS region transcription start site region 132225
Tssr135440 15 80576617 to 80576624 7 - TSS region transcription start site region 135440
Tssr132226 15 80578367 to 80578391 24 + TSS region transcription start site region 132226
Tssr132227 15 80597720 to 80597765 45 + TSS region transcription start site region 132227
Tssr132228 15 80597865 to 80597875 10 + TSS region transcription start site region 132228
Tssr132229 15 80611753 to 80611767 14 + TSS region transcription start site region 132229
5830419E12Rik 15 80615947 to 80617979 2032 protein coding gene RIKEN cDNA 5830419E12 gene
Tssr132230 15 80623342 to 80623354 12 + TSS region transcription start site region 132230
Tssr132231 15 80623470 to 80623491 21 + TSS region transcription start site region 132231
Tssr132232 15 80623499 to 80623549 50 + TSS region transcription start site region 132232
Gm49553 15 80640458 to 80642408 1950 + unclassified gene predicted gene, 49553
Mir6957 15 80646073 to 80646136 63 + miRNA gene microRNA 6957
Tssr135441 15 80650052 to 80650060 8 - TSS region transcription start site region 135441
Cpgi7376 15 80671304 to 80672436 1132 CpG island CpG island 7376
Tssr132233 15 80671622 to 80671633 11 + TSS region transcription start site region 132233
Tssr132234 15 80671636 to 80671646 10 + TSS region transcription start site region 132234
Tssr132235 15 80671648 to 80671677 29 + TSS region transcription start site region 132235
Tssr132236 15 80671686 to 80671696 10 + TSS region transcription start site region 132236
Tssr132237 15 80671829 to 80671861 32 + TSS region transcription start site region 132237
Fam83f 15 80671847 to 80700425 28578 + protein coding gene family with sequence similarity 83, member F
A430088P11Rik 15 80691025 to 80697610 6585 - antisense lncRNA gene RIKEN cDNA A430088P11 gene
Tssr135442 15 80697601 to 80697616 15 - TSS region transcription start site region 135442
Tssr135443 15 80701567 to 80701579 12 - TSS region transcription start site region 135443
Cpgi7377 15 80710758 to 80712366 1608 CpG island CpG island 7377
Tssr132238 15 80711241 to 80711265 24 + TSS region transcription start site region 132238
Tssr132239 15 80711292 to 80711340 48 + TSS region transcription start site region 132239
Tnrc6b 15 80711313 to 80941085 229772 + protein coding gene trinucleotide repeat containing 6b
Tssr135444 15 80711994 to 80712005 11 - TSS region transcription start site region 135444
Gm49512 15 80712271 to 80713686 1415 + sense intronic lncRNA gene predicted gene, 49512
Tssr132240 15 80722518 to 80722522 4 + TSS region transcription start site region 132240
Tssr4661 15 80743020 to 80743027 7 - TSS region transcription start site region 4661
Tssr135445 15 80743653 to 80743673 20 - TSS region transcription start site region 135445
Tssr132241 15 80743793 to 80743838 45 + TSS region transcription start site region 132241
Tssr132242 15 80762424 to 80762457 33 + TSS region transcription start site region 132242
Tssr135446 15 80798452 to 80798465 13 - TSS region transcription start site region 135446
Tssr132243 15 80798586 to 80798608 22 + TSS region transcription start site region 132243
Tssr132244 15 80798627 to 80798652 25 + TSS region transcription start site region 132244
D15Mit32 15 80814519 to 80814647 128 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 32
D15Mit31 15 80814519 to 80814706 187 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 31
Tssr132245 15 80820403 to 80820415 12 + TSS region transcription start site region 132245
Tssr132246 15 80820422 to 80820434 12 + TSS region transcription start site region 132246