Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:79452238-81233279

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424 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Msq1 15 63517797 to 81202235 17684438 QTL MAV-1 susceptibility QTL 1
Cocia2 15 72500610 to 80014977 7514367 QTL cocaine induced activation 2
Csnk1e 15 79417856 to 79455566 37710 - protein coding gene casein kinase 1, epsilon
Cpgi7335 15 79455489 to 79455700 211 CpG island CpG island 7335
Tssr135349 15 79455528 to 79455560 32 - TSS region transcription start site region 135349
Gm41359 15 79459764 to 79466151 6387 - lncRNA gene predicted gene, 41359
Gm44302 15 79472381 to 79472471 90 + miRNA gene predicted gene, 44302
Gm49593 15 79480227 to 79482674 2447 - unclassified gene predicted gene, 49593
Kcnj4 15 79483714 to 79505241 21527 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 4
Cpgi7336 15 79493637 to 79493963 326 CpG island CpG island 7336
Cpgi7337 15 79504807 to 79506307 1500 CpG island CpG island 7337
Tssr135350 15 79505810 to 79505831 21 - TSS region transcription start site region 135350
Gm49552 15 79510325 to 79512517 2192 + unclassified gene predicted gene, 49552
Cpgi7338 15 79511325 to 79512128 803 CpG island CpG island 7338
Cpgi7339 15 79515983 to 79517150 1167 CpG island CpG island 7339
Tssr132097 15 79516396 to 79516487 91 + TSS region transcription start site region 132097
Kdelr3 15 79516411 to 79527739 11328 + protein coding gene KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
Tssr132098 15 79516489 to 79516506 17 + TSS region transcription start site region 132098
Tssr132099 15 79519809 to 79519813 4 + TSS region transcription start site region 132099
Ddx17 15 79527736 to 79546741 19005 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
Tssr132100 15 79527737 to 79527745 8 + TSS region transcription start site region 132100
Tssr135351 15 79529657 to 79529661 4 - TSS region transcription start site region 135351
Tssr132101 15 79533833 to 79533848 15 + TSS region transcription start site region 132101
Tssr135352 15 79534201 to 79534209 8 - TSS region transcription start site region 135352
Tssr135353 15 79534363 to 79534382 19 - TSS region transcription start site region 135353
Tssr135354 15 79545739 to 79545743 4 - TSS region transcription start site region 135354
Cpgi7340 15 79545933 to 79547432 1499 CpG island CpG island 7340
Tssr135355 15 79546270 to 79546273 3 - TSS region transcription start site region 135355
Tssr135356 15 79546447 to 79546458 11 - TSS region transcription start site region 135356
Tssr135357 15 79546541 to 79546566 25 - TSS region transcription start site region 135357
Tssr135358 15 79546579 to 79546588 9 - TSS region transcription start site region 135358
Tssr135359 15 79546745 to 79546787 42 - TSS region transcription start site region 135359
Tssr132102 15 79546854 to 79546912 58 + TSS region transcription start site region 132102
Dmc1 15 79561497 to 79605109 43612 - protein coding gene DNA meiotic recombinase 1
D15Mit259 15 79563697 to 79563777 80 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 259
D15Mit71 15 79590436 to 79590561 125 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 71
Rapop5 15 79590561 to 9272936 -70317625 QTL radiation-induced apoptosis 5
Gm27903 15 79594668 to 79594793 125 - miRNA gene predicted gene, 27903
Cpgi7341 15 79604483 to 79605472 989 CpG island CpG island 7341
Tssr135360 15 79605086 to 79605114 28 - TSS region transcription start site region 135360
Fam227a 15 79609576 to 79658956 49380 - protein coding gene family with sequence similarity 227, member A
Tssr135361 15 79620761 to 79620780 19 - TSS region transcription start site region 135361
Cpgi7342 15 79658560 to 79659468 908 CpG island CpG island 7342
Tssr135362 15 79658789 to 79658798 9 - TSS region transcription start site region 135362
Tssr135363 15 79658854 to 79658888 34 - TSS region transcription start site region 135363
Tssr135364 15 79658889 to 79658933 44 - TSS region transcription start site region 135364
Tssr132103 15 79659188 to 79659194 6 + TSS region transcription start site region 132103
Tssr132104 15 79659196 to 79659267 71 + TSS region transcription start site region 132104
Cby1 15 79659199 to 79667660 8461 + protein coding gene chibby family member 1, beta catenin antagonist
Gm30877 15 79665768 to 79666993 1225 - lncRNA gene predicted gene, 30877
Tssr132105 15 79668541 to 79668546 5 + TSS region transcription start site region 132105
Cpgi7343 15 79670653 to 79671439 786 CpG island CpG island 7343
Tssr132106 15 79670856 to 79670888 32 + TSS region transcription start site region 132106
Tomm22 15 79670868 to 79672862 1994 + protein coding gene translocase of outer mitochondrial membrane 22
Tssr132107 15 79671073 to 79671133 60 + TSS region transcription start site region 132107
Tssr132108 15 79671136 to 79671148 12 + TSS region transcription start site region 132108
Josd1 15 79674250 to 79687872 13622 - protein coding gene Josephin domain containing 1
Gm49520 15 79681102 to 79681322 220 - pseudogene predicted gene, 49520
Cpgi7344 15 79686841 to 79688236 1395 CpG island CpG island 7344
Tssr135365 15 79687744 to 79687756 12 - TSS region transcription start site region 135365
Tssr135366 15 79687776 to 79687894 118 - TSS region transcription start site region 135366
Tssr132109 15 79687927 to 79687949 22 + TSS region transcription start site region 132109
Tssr132110 15 79687966 to 79687993 27 + TSS region transcription start site region 132110
Tssr132111 15 79687996 to 79688013 17 + TSS region transcription start site region 132111
Gm26884 15 79689140 to 79692385 3245 - lincRNA gene predicted gene, 26884
Cpgi7345 15 79690287 to 79691787 1500 CpG island CpG island 7345
Tssr132112 15 79690869 to 79690905 36 + TSS region transcription start site region 132112
Gtpbp1 15 79690896 to 79721479 30583 + protein coding gene GTP binding protein 1
Tssr132113 15 79690921 to 79690924 3 + TSS region transcription start site region 132113
n-R5s40 15 79692502 to 79692625 123 + rRNA gene nuclear encoded rRNA 5S 40
Tssr132114 15 79693950 to 79693971 21 + TSS region transcription start site region 132114
Cpgi7346 15 79706988 to 79707146 158 CpG island CpG island 7346
Sun2 15 79724070 to 79742536 18466 - protein coding gene Sad1 and UNC84 domain containing 2
Tssr135367 15 79729124 to 79729133 9 - TSS region transcription start site region 135367
Tssr135368 15 79733750 to 79733760 10 - TSS region transcription start site region 135368
Tssr132115 15 79733965 to 79733968 3 + TSS region transcription start site region 132115
Tssr135369 15 79734365 to 79734401 36 - TSS region transcription start site region 135369
Tssr135370 15 79735969 to 79735984 15 - TSS region transcription start site region 135370
Tssr135371 15 79739006 to 79739018 12 - TSS region transcription start site region 135371
Tssr135372 15 79739484 to 79739502 18 - TSS region transcription start site region 135372
Tssr132116 15 79739540 to 79739558 18 + TSS region transcription start site region 132116
Tssr132117 15 79739574 to 79739594 20 + TSS region transcription start site region 132117
Gm16575 15 79739574 to 79741798 2224 + antisense lncRNA gene predicted gene 16575
Tssr132118 15 79739596 to 79739610 14 + TSS region transcription start site region 132118
Tssr4656 15 79739631 to 79739640 9 + TSS region transcription start site region 4656
Tssr135373 15 79741281 to 79741297 16 - TSS region transcription start site region 135373
Tssr135374 15 79741301 to 79741315 14 - TSS region transcription start site region 135374
Tssr135375 15 79741328 to 79741341 13 - TSS region transcription start site region 135375
Tssr135376 15 79741353 to 79741361 8 - TSS region transcription start site region 135376
Cpgi7347 15 79741907 to 79742893 986 CpG island CpG island 7347
Tssr135377 15 79742465 to 79742476 11 - TSS region transcription start site region 135377
Tssr135378 15 79742493 to 79742511 18 - TSS region transcription start site region 135378
Tssr135379 15 79742518 to 79742562 44 - TSS region transcription start site region 135379
Gm16576 15 79742698 to 79757394 14696 + bidirectional promoter lncRNA gene predicted gene 16576
Dnal4 15 79761449 to 79774467 13018 - protein coding gene dynein, axonemal, light chain 4
Tssr4657 15 79761723 to 79761724 1 + TSS region transcription start site region 4657
Tssr4658 15 79768355 to 79768359 4 + TSS region transcription start site region 4658
Cpgi7348 15 79773981 to 79774851 870 CpG island CpG island 7348
Tssr135380 15 79774383 to 79774394 11 - TSS region transcription start site region 135380
Tssr135381 15 79774408 to 79774474 66 - TSS region transcription start site region 135381
Gm30977 15 79774553 to 79794252 19699 + lncRNA gene predicted gene, 30977
Nptxr 15 79786351 to 79804709 18358 - protein coding gene neuronal pentraxin receptor
Tssr135382 15 79786877 to 79786885 8 - TSS region transcription start site region 135382
Tssr135383 15 79789041 to 79789057 16 - TSS region transcription start site region 135383
Tssr135384 15 79789628 to 79789641 13 - TSS region transcription start site region 135384
Npcd 15 79789675 to 79834237 44562 - protein coding gene neuronal pentraxin chromo domain
Tssr135385 15 79790944 to 79790951 7 - TSS region transcription start site region 135385
Cpgi7349 15 79792567 to 79792941 374 CpG island CpG island 7349
Cpgi7350 15 79803486 to 79805450 1964 CpG island CpG island 7350
Tssr135386 15 79804225 to 79804241 16 - TSS region transcription start site region 135386
Tssr135387 15 79804455 to 79804503 48 - TSS region transcription start site region 135387
Tssr135388 15 79804711 to 79804716 5 - TSS region transcription start site region 135388
Tssr135389 15 79804717 to 79804732 15 - TSS region transcription start site region 135389
Cbx6 15 79823898 to 79834333 10435 - protein coding gene chromobox 6
Cpgi7351 15 79828190 to 79829172 982 CpG island CpG island 7351
Cpgi7352 15 79833443 to 79834689 1246 CpG island CpG island 7352
Tssr135390 15 79834208 to 79834219 11 - TSS region transcription start site region 135390
Tssr135391 15 79834224 to 79834245 21 - TSS region transcription start site region 135391
Tssr135392 15 79834261 to 79834285 24 - TSS region transcription start site region 135392
Tssr135393 15 79834288 to 79834314 26 - TSS region transcription start site region 135393
Tssr135394 15 79834323 to 79834334 11 - TSS region transcription start site region 135394
Tssr135395 15 79834335 to 79834344 9 - TSS region transcription start site region 135395
Gm10856 15 79843163 to 79846763 3600 + lincRNA gene predicted gene 10856
Gm49412 15 79873869 to 79877223 3354 + unclassified gene predicted gene, 49412
Tssr132119 15 79878965 to 79878990 25 + TSS region transcription start site region 132119
Cpgi7353 15 79883249 to 79883849 600 CpG island CpG island 7353
Tssr132120 15 79883507 to 79883527 20 + TSS region transcription start site region 132120
D730005E14Rik 15 79889532 to 79893138 3606 - lncRNA gene RIKEN cDNA D730005E14 gene
Tssr132121 15 79891631 to 79891662 31 + TSS region transcription start site region 132121
Apobec3 15 79891659 to 79915906 24247 + protein coding gene apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3
Tssr132122 15 79891693 to 79891704 11 + TSS region transcription start site region 132122
Tssr135396 15 79892315 to 79892349 34 - TSS region transcription start site region 135396
Tssr135397 15 79892353 to 79892364 11 - TSS region transcription start site region 135397
Tssr132123 15 79892379 to 79892390 11 + TSS region transcription start site region 132123
Tssr132124 15 79892397 to 79892435 38 + TSS region transcription start site region 132124
Cpgi7354 15 79892419 to 79892622 203 CpG island CpG island 7354
Tssr132125 15 79892436 to 79892482 46 + TSS region transcription start site region 132125
Tssr135398 15 79893052 to 79893063 11 - TSS region transcription start site region 135398
Tssr135399 15 79893117 to 79893137 20 - TSS region transcription start site region 135399
Tssr132126 15 79894986 to 79895015 29 + TSS region transcription start site region 132126
Tssr132127 15 79895017 to 79895036 19 + TSS region transcription start site region 132127
Tssr132128 15 79895091 to 79895104 13 + TSS region transcription start site region 132128
Tssr132129 15 79896696 to 79896719 23 + TSS region transcription start site region 132129
Tssr132130 15 79897706 to 79897757 51 + TSS region transcription start site region 132130
Tssr132131 15 79898347 to 79898350 3 + TSS region transcription start site region 132131
Tssr132132 15 79900240 to 79900249 9 + TSS region transcription start site region 132132
Tssr132133 15 79900271 to 79900288 17 + TSS region transcription start site region 132133
Tssr132134 15 79900295 to 79900311 16 + TSS region transcription start site region 132134
Tssr132135 15 79900317 to 79900334 17 + TSS region transcription start site region 132135
Tssr132136 15 79900345 to 79900363 18 + TSS region transcription start site region 132136
Tssr132137 15 79900375 to 79900385 10 + TSS region transcription start site region 132137
Tssr132138 15 79901187 to 79901198 11 + TSS region transcription start site region 132138
Tssr132139 15 79905462 to 79905520 58 + TSS region transcription start site region 132139
Tssr132140 15 79905840 to 79905846 6 + TSS region transcription start site region 132140
Tssr132141 15 79906544 to 79906556 12 + TSS region transcription start site region 132141
Tssr132142 15 79907389 to 79907422 33 + TSS region transcription start site region 132142
Tssr132143 15 79907633 to 79907652 19 + TSS region transcription start site region 132143
Tssr132144 15 79911081 to 79911086 5 + TSS region transcription start site region 132144
Tssr132145 15 79913007 to 79913013 6 + TSS region transcription start site region 132145
Cbx7 15 79915807 to 79971119 55312 - protein coding gene chromobox 7
Cpgi7355 15 79918174 to 79919064 890 CpG island CpG island 7355
Cpgi7356 15 79927631 to 79928054 423 CpG island CpG island 7356
Tssr132146 15 79927839 to 79927894 55 + TSS region transcription start site region 132146
Tssr132147 15 79928147 to 79928159 12 + TSS region transcription start site region 132147
Tssr135400 15 79931695 to 79931736 41 - TSS region transcription start site region 135400
Cpgi7357 15 79932133 to 79933045 912 CpG island CpG island 7357
Tssr135401 15 79932511 to 79932546 35 - TSS region transcription start site region 135401
Tssr135402 15 79932584 to 79932665 81 - TSS region transcription start site region 135402
Tssr135403 15 79932716 to 79932782 66 - TSS region transcription start site region 135403
Tssr132148 15 79932884 to 79932897 13 + TSS region transcription start site region 132148
Cpgi7358 15 79933423 to 79933801 378 CpG island CpG island 7358
Tssr132149 15 79933954 to 79934002 48 + TSS region transcription start site region 132149
Tssr135404 15 79934407 to 79934414 7 - TSS region transcription start site region 135404
Tssr4659 15 79935620 to 79935623 3 + TSS region transcription start site region 4659
Tssr132150 15 79935957 to 79935972 15 + TSS region transcription start site region 132150
Tssr135405 15 79958391 to 79958406 15 - TSS region transcription start site region 135405
Tssr135406 15 79958409 to 79958426 17 - TSS region transcription start site region 135406
Cpgi7359 15 79962671 to 79962942 271 CpG island CpG island 7359
Tssr135407 15 79971121 to 79971129 8 - TSS region transcription start site region 135407
Pdgfb 15 79995874 to 80014977 19103 - protein coding gene platelet derived growth factor, B polypeptide
Vacq2 15 79995874 to 80014977 19103 QTL voluntary alcohol consumption QTL 2
Mir7213 15 79998970 to 79999026 56 - miRNA gene microRNA 7213
Cpgi7360 15 80011775 to 80015273 3498 CpG island CpG island 7360
Tssr132151 15 80012240 to 80012266 26 + TSS region transcription start site region 132151
Tssr132152 15 80012321 to 80012348 27 + TSS region transcription start site region 132152
Gm41361 15 80012331 to 80042457 30126 + antisense lncRNA gene predicted gene, 41361
Tssr135408 15 80013211 to 80013226 15 - TSS region transcription start site region 135408
Tssr135409 15 80013964 to 80013983 19 - TSS region transcription start site region 135409
Tssr135410 15 80013989 to 80014018 29 - TSS region transcription start site region 135410
Tssr135411 15 80014278 to 80014290 12 - TSS region transcription start site region 135411
Tssr135412 15 80014301 to 80014367 66 - TSS region transcription start site region 135412
Tssr135413 15 80014966 to 80014984 18 - TSS region transcription start site region 135413
Tssr132153 15 80024485 to 80024490 5 + TSS region transcription start site region 132153
Tssr132154 15 80042423 to 80042449 26 + TSS region transcription start site region 132154
F830031D20Rik 15 80048255 to 80050093 1838 unclassified gene RIKEN cDNA F830031D20 gene
Gm41362 15 80053218 to 80059754 6536 - lncRNA gene predicted gene, 41362
Tssr132155 15 80059570 to 80059571 1 + TSS region transcription start site region 132155
Rpl3 15 80077781 to 80083406 5625 - protein coding gene ribosomal protein L3
Snord83b 15 80078503 to 80078579 76 - snoRNA gene small nucleolar RNA, C/D box 83B
Gm22077 15 80080251 to 80080343 92 - snoRNA gene predicted gene, 22077