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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:78962703-79162706

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Triobp 15 78947724 to 79005869 58145 + protein coding gene TRIO and F-actin binding protein
Tssr132028 15 78967332 to 78967335 3 + TSS region transcription start site region 132028
Tssr132029 15 78967497 to 78967500 3 + TSS region transcription start site region 132029
Cpgi7309 15 78967620 to 78968195 575 CpG island CpG island 7309
Tssr4654 15 78973055 to 78973063 8 + TSS region transcription start site region 4654
Cpgi7310 15 78982496 to 78983632 1136 CpG island CpG island 7310
Tssr132030 15 78983048 to 78983120 72 + TSS region transcription start site region 132030
Tssr132031 15 78987083 to 78987103 20 + TSS region transcription start site region 132031
Tssr132032 15 78987104 to 78987120 16 + TSS region transcription start site region 132032
Tssr132033 15 78987127 to 78987137 10 + TSS region transcription start site region 132033
Gm10865 15 78994955 to 79011041 16086 - antisense lncRNA gene predicted gene 10865
Mir6956 15 79002223 to 79002284 61 + miRNA gene microRNA 6956
Tssr132034 15 79002252 to 79002263 11 + TSS region transcription start site region 132034
Tssr132035 15 79002280 to 79002296 16 + TSS region transcription start site region 132035
Tssr132036 15 79002298 to 79002316 18 + TSS region transcription start site region 132036
Tssr132037 15 79002319 to 79002331 12 + TSS region transcription start site region 132037
Tssr132038 15 79002338 to 79002352 14 + TSS region transcription start site region 132038
Tssr132039 15 79005238 to 79005318 80 + TSS region transcription start site region 132039
Tssr132040 15 79005474 to 79005491 17 + TSS region transcription start site region 132040
D15Mit119 15 79014192 to 79014316 124 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 119
Gm17753 15 79016210 to 79026067 9857 - lincRNA gene predicted gene, 17753
Tssr135301 15 79025864 to 79025867 3 - TSS region transcription start site region 135301
Tssr135302 15 79025914 to 79025926 12 - TSS region transcription start site region 135302
Gm49544 15 79026456 to 79028612 2156 - antisense lncRNA gene predicted gene, 49544
Tssr132041 15 79026991 to 79027005 14 + TSS region transcription start site region 132041
Cpgi7311 15 79027588 to 79029101 1513 CpG island CpG island 7311
Tssr132042 15 79028442 to 79028456 14 + TSS region transcription start site region 132042
H1f0 15 79028450 to 79030504 2054 + protein coding gene H1 histone family, member 0
Tssr132043 15 79028471 to 79028482 11 + TSS region transcription start site region 132043
Tssr132044 15 79028530 to 79028543 13 + TSS region transcription start site region 132044
Tssr135303 15 79028789 to 79028854 65 - TSS region transcription start site region 135303
Tssr135304 15 79028889 to 79028915 26 - TSS region transcription start site region 135304
Tssr135305 15 79029124 to 79029174 50 - TSS region transcription start site region 135305
Tssr132045 15 79029302 to 79029334 32 + TSS region transcription start site region 132045
Cpgi7312 15 79030515 to 79031257 742 CpG island CpG island 7312
Tssr132046 15 79030849 to 79030859 10 + TSS region transcription start site region 132046
Gcat 15 79030874 to 79042531 11657 + protein coding gene glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)
Tssr132047 15 79030885 to 79030933 48 + TSS region transcription start site region 132047
Tssr132048 15 79030945 to 79030952 7 + TSS region transcription start site region 132048
Cpgi7313 15 79037708 to 79038113 405 CpG island CpG island 7313
Cpgi7314 15 79040585 to 79040843 258 CpG island CpG island 7314
Galr3 15 79041885 to 79043558 1673 + protein coding gene galanin receptor 3
Cpgi7315 15 79042046 to 79043717 1671 CpG island CpG island 7315
Gm3924 15 79045599 to 79051176 5577 - lincRNA gene predicted gene 3924
Ankrd54 15 79053094 to 79062893 9799 - protein coding gene ankyrin repeat domain 54
Cpgi7316 15 79062226 to 79063234 1008 CpG island CpG island 7316
Tssr135306 15 79062675 to 79062691 16 - TSS region transcription start site region 135306
Tssr135307 15 79062703 to 79062706 3 - TSS region transcription start site region 135307
Tssr135308 15 79062719 to 79062756 37 - TSS region transcription start site region 135308
Tssr135309 15 79062763 to 79062770 7 - TSS region transcription start site region 135309
Tssr135310 15 79062866 to 79062941 75 - TSS region transcription start site region 135310
Gm49471 15 79064661 to 79065948 1287 + unclassified gene predicted gene, 49471
4930563H03Rik 15 79074718 to 79075128 410 unclassified gene RIKEN cDNA 4930563H03 gene
Cpgi7317 15 79075009 to 79075646 637 CpG island CpG island 7317
Tssr132049 15 79075209 to 79075245 36 + TSS region transcription start site region 132049
Eif3l 15 79075223 to 79094400 19177 + protein coding gene eukaryotic translation initiation factor 3, subunit L
Tssr132050 15 79081579 to 79081625 46 + TSS region transcription start site region 132050
Tssr132051 15 79081864 to 79081879 15 + TSS region transcription start site region 132051
Tssr132052 15 79085575 to 79085595 20 + TSS region transcription start site region 132052
Tssr132053 15 79089592 to 79089644 52 + TSS region transcription start site region 132053
Gm25072 15 79094823 to 79095057 234 - unclassified non-coding RNA gene predicted gene, 25072
Cpgi7318 15 79108394 to 79109773 1379 CpG island CpG island 7318
Tssr135311 15 79108604 to 79108625 21 - TSS region transcription start site region 135311
Tssr132054 15 79108728 to 79108780 52 + TSS region transcription start site region 132054
Tssr132055 15 79108868 to 79108885 17 + TSS region transcription start site region 132055
Micall1 15 79108898 to 79136900 28002 + protein coding gene microtubule associated monooxygenase, calponin and LIM domain containing -like 1
Tssr132056 15 79108911 to 79108982 71 + TSS region transcription start site region 132056
Tssr135312 15 79109001 to 79109002 1 - TSS region transcription start site region 135312
Tssr132057 15 79109055 to 79109074 19 + TSS region transcription start site region 132057
Tssr132058 15 79109079 to 79109088 9 + TSS region transcription start site region 132058
Tssr132059 15 79109094 to 79109106 12 + TSS region transcription start site region 132059
Tssr132060 15 79109120 to 79109134 14 + TSS region transcription start site region 132060
Tssr132061 15 79109145 to 79109180 35 + TSS region transcription start site region 132061
Tssr132062 15 79109187 to 79109209 22 + TSS region transcription start site region 132062
Tssr135313 15 79109425 to 79109437 12 - TSS region transcription start site region 135313
Tssr132063 15 79124481 to 79124518 37 + TSS region transcription start site region 132063
Tssr132064 15 79131713 to 79131749 36 + TSS region transcription start site region 132064
1700088E04Rik 15 79134655 to 79141251 6596 - protein coding gene RIKEN cDNA 1700088E04 gene
D15Mit260 15 79135542 to 79135768 226 DNA segment DNA Segment, Chr 15 Massachusetts Institute of Technology 260
Cpgi7319 15 79140803 to 79141647 844 CpG island CpG island 7319
Tssr135314 15 79141197 to 79141268 71 - TSS region transcription start site region 135314
Tssr132065 15 79141310 to 79141321 11 + TSS region transcription start site region 132065
Tssr132066 15 79141324 to 79141358 34 + TSS region transcription start site region 132066
Polr2f 15 79141325 to 79151774 10449 + protein coding gene polymerase (RNA) II (DNA directed) polypeptide F
Tssr132067 15 79141364 to 79141390 26 + TSS region transcription start site region 132067
Tssr132068 15 79144621 to 79144636 15 + TSS region transcription start site region 132068
Sox10 15 79154913 to 79164490 9577 - protein coding gene SRY (sex determining region Y)-box 10
Tssr135315 15 79156533 to 79156546 13 - TSS region transcription start site region 135315