Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:78620901-78920925

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tailq6 15 3460212 to 78717086 75256874 QTL tail length QTL 6
Tailaq4 15 3460212 to 78717086 75256874 QTL tail length adjusted QTL 4
Epfpq4 15 3460212 to 78717086 75256874 QTL epididymal fat percentage QTL 4
W3q7 15 3460212 to 78717086 75256874 QTL weight 3 weeks QTL 7
Scfq2 15 3460212 to 78717086 75256874 QTL subcutaneous fat pad weight QTL 2
Cyth4 15 78597047 to 78622019 24972 + protein coding gene cytohesin 4
Gm36877 15 78638613 to 78645475 6862 - lncRNA gene predicted gene, 36877
Elfn2 15 78667331 to 78718771 51440 - protein coding gene leucine rich repeat and fibronectin type III, extracellular 2
Tssr135261 15 78670477 to 78670480 3 - TSS region transcription start site region 135261
Tssr135262 15 78670513 to 78670535 22 - TSS region transcription start site region 135262
Tssr135263 15 78670539 to 78670545 6 - TSS region transcription start site region 135263
Tssr135264 15 78670548 to 78670549 1 - TSS region transcription start site region 135264
Tssr131984 15 78670630 to 78670650 20 + TSS region transcription start site region 131984
Tssr131985 15 78670670 to 78670680 10 + TSS region transcription start site region 131985
Tssr131986 15 78670782 to 78670802 20 + TSS region transcription start site region 131986
Cpgi7295 15 78672153 to 78672724 571 CpG island CpG island 7295
Tssr135265 15 78673230 to 78673259 29 - TSS region transcription start site region 135265
Tssr135266 15 78673680 to 78673689 9 - TSS region transcription start site region 135266
1700041B01Rik 15 78674687 to 78676124 1437 + antisense lncRNA gene RIKEN cDNA 1700041B01 gene
Tssr131987 15 78687192 to 78687194 2 + TSS region transcription start site region 131987
V25Dq8 15 78700000 to 78700000 0 QTL vitamin D inactive form serum level QTL 8
Tssr135267 15 78710774 to 78710793 19 - TSS region transcription start site region 135267
Tssr135268 15 78710794 to 78710806 12 - TSS region transcription start site region 135268
Cpgi7296 15 78712132 to 78713411 1279 CpG island CpG island 7296
D15Mit1 15 78716903 to 78717086 183 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 1
Cpgi7297 15 78717843 to 78719755 1912 CpG island CpG island 7297
Tssr135269 15 78718462 to 78718510 48 - TSS region transcription start site region 135269
Tssr135270 15 78718515 to 78718555 40 - TSS region transcription start site region 135270
Tssr135271 15 78718556 to 78718577 21 - TSS region transcription start site region 135271
Tssr135272 15 78718845 to 78718879 34 - TSS region transcription start site region 135272
Tssr135273 15 78726748 to 78726764 16 - TSS region transcription start site region 135273
Mfng 15 78755882 to 78773475 17593 - protein coding gene MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Tssr135274 15 78770826 to 78770835 9 - TSS region transcription start site region 135274
Tssr135275 15 78770842 to 78770856 14 - TSS region transcription start site region 135275
Tssr135276 15 78770901 to 78770925 24 - TSS region transcription start site region 135276
Tssr135277 15 78770989 to 78771000 11 - TSS region transcription start site region 135277
Tssr135278 15 78771879 to 78771892 13 - TSS region transcription start site region 135278
Tssr131988 15 78772657 to 78772662 5 + TSS region transcription start site region 131988
Cpgi7298 15 78773058 to 78773279 221 CpG island CpG island 7298
Tssr135279 15 78773394 to 78773405 11 - TSS region transcription start site region 135279
Tssr135280 15 78773411 to 78773422 11 - TSS region transcription start site region 135280
Tssr135281 15 78773424 to 78773435 11 - TSS region transcription start site region 135281
Tssr135282 15 78773440 to 78773451 11 - TSS region transcription start site region 135282
Tssr135283 15 78773452 to 78773486 34 - TSS region transcription start site region 135283
Tssr135284 15 78773502 to 78773509 7 - TSS region transcription start site region 135284
Tssr4650 15 78774880 to 78774889 9 - TSS region transcription start site region 4650
Card10 15 78775138 to 78803042 27904 - protein coding gene caspase recruitment domain family, member 10
Tssr131989 15 78779555 to 78779583 28 + TSS region transcription start site region 131989
Cpgi7299 15 78799104 to 78799377 273 CpG island CpG island 7299
Cpgi7300 15 78801927 to 78803834 1907 CpG island CpG island 7300
Tssr135285 15 78802870 to 78802884 14 - TSS region transcription start site region 135285
Tssr135286 15 78802885 to 78802920 35 - TSS region transcription start site region 135286
Tssr135287 15 78803015 to 78803050 35 - TSS region transcription start site region 135287
Tssr135288 15 78804364 to 78804378 14 - TSS region transcription start site region 135288
Cpgi7301 15 78820699 to 78820921 222 CpG island CpG island 7301
Gm7318 15 78820810 to 78821402 592 + pseudogene predicted gene 7318
Tssr135289 15 78837816 to 78837817 1 - TSS region transcription start site region 135289
Cpgi7302 15 78842099 to 78843431 1332 CpG island CpG island 7302
Tssr131990 15 78842632 to 78842652 20 + TSS region transcription start site region 131990
Cdc42ep1 15 78842647 to 78850902 8255 + protein coding gene CDC42 effector protein (Rho GTPase binding) 1
Tssr135290 15 78844872 to 78844874 2 - TSS region transcription start site region 135290
Lgals2 15 78850860 to 78855529 4669 - protein coding gene lectin, galactose-binding, soluble 2
Tssr131991 15 78850935 to 78850959 24 + TSS region transcription start site region 131991
Tssr131992 15 78850961 to 78850989 28 + TSS region transcription start site region 131992
Tssr135291 15 78850977 to 78850995 18 - TSS region transcription start site region 135291
Tssr135292 15 78851145 to 78851157 12 - TSS region transcription start site region 135292
Tssr135293 15 78851379 to 78851404 25 - TSS region transcription start site region 135293
Tssr135294 15 78855517 to 78855536 19 - TSS region transcription start site region 135294
Tssr135295 15 78855698 to 78855739 41 - TSS region transcription start site region 135295
Gm26634 15 78862956 to 78868533 5577 - lincRNA gene predicted gene, 26634
Cpgi7303 15 78876916 to 78878415 1499 CpG island CpG island 7303
Tssr135296 15 78877085 to 78877126 41 - TSS region transcription start site region 135296
Tssr131993 15 78877161 to 78877170 9 + TSS region transcription start site region 131993
Tssr131994 15 78877172 to 78877196 24 + TSS region transcription start site region 131994
Gga1 15 78877190 to 78894585 17395 + protein coding gene golgi associated, gamma adaptin ear containing, ARF binding protein 1
Tssr131995 15 78877249 to 78877264 15 + TSS region transcription start site region 131995
Tssr131996 15 78877297 to 78877315 18 + TSS region transcription start site region 131996
Tssr4651 15 78877455 to 78877482 27 - TSS region transcription start site region 4651
Tssr131997 15 78877541 to 78877585 44 + TSS region transcription start site region 131997
Tssr131998 15 78882125 to 78882155 30 + TSS region transcription start site region 131998
Tssr131999 15 78885283 to 78885320 37 + TSS region transcription start site region 131999
Tssr132000 15 78889741 to 78889790 49 + TSS region transcription start site region 132000
Tssr132001 15 78889801 to 78889817 16 + TSS region transcription start site region 132001
Tssr132002 15 78889820 to 78889834 14 + TSS region transcription start site region 132002
Mir6955 15 78891840 to 78891913 73 + miRNA gene microRNA 6955
Tssr132003 15 78892449 to 78892484 35 + TSS region transcription start site region 132003
Tssr132004 15 78899408 to 78899422 14 + TSS region transcription start site region 132004
Cpgi7304 15 78899419 to 78900261 842 CpG island CpG island 7304
Tssr135297 15 78899665 to 78899716 51 - TSS region transcription start site region 135297
Gm49510 15 78899667 to 78919032 19365 + protein coding gene predicted gene, 49510
Tssr132005 15 78899755 to 78899775 20 + TSS region transcription start site region 132005
Sh3bp1 15 78899768 to 78912051 12283 + protein coding gene SH3-domain binding protein 1
Tssr132006 15 78899783 to 78899815 32 + TSS region transcription start site region 132006
Tssr4652 15 78899822 to 78899827 5 + TSS region transcription start site region 4652
Tssr132007 15 78899844 to 78899853 9 + TSS region transcription start site region 132007
Tssr132008 15 78905790 to 78905801 11 + TSS region transcription start site region 132008
Tssr132009 15 78908425 to 78908470 45 + TSS region transcription start site region 132009
Tssr132010 15 78911488 to 78911516 28 + TSS region transcription start site region 132010
1700027A07Rik 15 78911966 to 78913660 1694 - antisense lncRNA gene RIKEN cDNA 1700027A07 gene
Cpgi7305 15 78913312 to 78914887 1575 CpG island CpG island 7305
Tssr132011 15 78913907 to 78913910 3 + TSS region transcription start site region 132011
Tssr132012 15 78913916 to 78913927 11 + TSS region transcription start site region 132012
Pdxp 15 78913919 to 78919517 5598 + protein coding gene pyridoxal (pyridoxine, vitamin B6) phosphatase
Tssr132013 15 78913931 to 78913966 35 + TSS region transcription start site region 132013
Tssr132014 15 78914370 to 78914406 36 + TSS region transcription start site region 132014
Tssr132015 15 78914408 to 78914475 67 + TSS region transcription start site region 132015
Gm30368 15 78919620 to 78928144 8524 - lncRNA gene predicted gene, 30368
Epfpq3 15 102993272 to 78716903 -24276369 QTL epididymal fat percentage QTL 3
W3q6 15 102993272 to 78716903 -24276369 QTL weight 3 weeks QTL 6