Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:77405990-78116013

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Apol9a 15 77403789 to 77411080 7291 - protein coding gene apolipoprotein L 9a
Gm36194 15 77418553 to 77423599 5046 + lncRNA gene predicted gene, 36194
Apol7b 15 77422209 to 77447460 25251 - protein coding gene apolipoprotein L 7b
4930571N24Rik 15 77427979 to 77461968 33989 + unclassified gene RIKEN cDNA 4930571N24 gene
Gm6506 15 77443289 to 77444420 1131 - pseudogene predicted gene 6506
Gm8208 15 77444674 to 77445219 545 - pseudogene predicted gene 8208
Gm49551 15 77468202 to 77468459 257 + pseudogene predicted gene, 49551
Tssr131865 15 77477044 to 77477048 4 + TSS region transcription start site region 131865
Apol10a 15 77477047 to 77491069 14022 + protein coding gene apolipoprotein L 10A
Apol11a 15 77508129 to 77517874 9745 + protein coding gene apolipoprotein L 11a
Tssr131866 15 77508268 to 77508270 2 + TSS region transcription start site region 131866
Apol7c 15 77524852 to 77533316 8464 - protein coding gene apolipoprotein L 7c
Tssr135100 15 77533312 to 77533317 5 - TSS region transcription start site region 135100
1700025B11Rik 15 77558239 to 77561892 3653 - protein coding gene RIKEN cDNA 1700025B11 gene
Tssr135101 15 77561857 to 77561887 30 - TSS region transcription start site region 135101
Apol10b 15 77583819 to 77596125 12306 - protein coding gene apolipoprotein L 10B
Tssr135102 15 77584900 to 77584905 5 - TSS region transcription start site region 135102
Tssr135103 15 77596110 to 77596131 21 - TSS region transcription start site region 135103
Gm36245 15 77599258 to 77602854 3596 + lncRNA gene predicted gene, 36245
Tssr131867 15 77618965 to 77618970 5 + TSS region transcription start site region 131867
Gm8221 15 77621834 to 77626637 4803 + pseudogene predicted gene 8221
Apol11b 15 77633951 to 77643286 9335 - protein coding gene apolipoprotein L 11b
Apol10c-ps 15 77656048 to 77656836 788 - pseudogene apolipoprotein L 10C, pseudogene
Tssr135104 15 77659844 to 77659849 5 - TSS region transcription start site region 135104
Gm49407 15 77668493 to 77668736 243 - pseudogene predicted gene, 49407
Apol7e 15 77698857 to 77719285 20428 + protein coding gene apolipoprotein L 7e
Tssr131868 15 77698904 to 77698910 6 + TSS region transcription start site region 131868
Gm8233 15 77701124 to 77701675 551 + pseudogene predicted gene 8233
Gm18911 15 77702003 to 77703000 997 + pseudogene predicted gene, 18911
Gm36329 15 77717897 to 77723009 5112 - antisense lncRNA gene predicted gene, 36329
Apol9b 15 77729072 to 77736382 7310 + protein coding gene apolipoprotein L 9b
Tssr131869 15 77729091 to 77729096 5 + TSS region transcription start site region 131869
Tssr131870 15 77729152 to 77729172 20 + TSS region transcription start site region 131870
Tssr131871 15 77733610 to 77733654 44 + TSS region transcription start site region 131871
Tssr4644 15 77740751 to 77740769 18 + TSS region transcription start site region 4644
Gm49410 15 77740761 to 77743890 3129 + unclassified gene predicted gene, 49410
Apol8 15 77747798 to 77757003 9205 - protein coding gene apolipoprotein L 8
Tssr135105 15 77755218 to 77755265 47 - TSS region transcription start site region 135105
Tssr135106 15 77755266 to 77755281 15 - TSS region transcription start site region 135106
Myh9 15 77760587 to 77842175 81588 - protein coding gene myosin, heavy polypeptide 9, non-muscle
Tssr135107 15 77760786 to 77760802 16 - TSS region transcription start site region 135107
Tssr135108 15 77760867 to 77760950 83 - TSS region transcription start site region 135108
Tssr135109 15 77760951 to 77760963 12 - TSS region transcription start site region 135109
Tssr135110 15 77760990 to 77761013 23 - TSS region transcription start site region 135110
Tssr135111 15 77761078 to 77761111 33 - TSS region transcription start site region 135111
Tssr135112 15 77761767 to 77761783 16 - TSS region transcription start site region 135112
Tssr135113 15 77763831 to 77763843 12 - TSS region transcription start site region 135113
Cpgi7273 15 77764329 to 77764638 309 CpG island CpG island 7273
Tssr135114 15 77765766 to 77765780 14 - TSS region transcription start site region 135114
Tssr135115 15 77766829 to 77766861 32 - TSS region transcription start site region 135115
Tssr135116 15 77767567 to 77767593 26 - TSS region transcription start site region 135116
Tssr135117 15 77767643 to 77767656 13 - TSS region transcription start site region 135117
Tssr135118 15 77769873 to 77769892 19 - TSS region transcription start site region 135118
Tssr135119 15 77771174 to 77771191 17 - TSS region transcription start site region 135119
Tssr135120 15 77771210 to 77771227 17 - TSS region transcription start site region 135120
Tssr135121 15 77771854 to 77771867 13 - TSS region transcription start site region 135121
Tssr135122 15 77773395 to 77773418 23 - TSS region transcription start site region 135122
Tssr131872 15 77775206 to 77775209 3 + TSS region transcription start site region 131872
Tssr135123 15 77775209 to 77775224 15 - TSS region transcription start site region 135123
Tssr135124 15 77775926 to 77775943 17 - TSS region transcription start site region 135124
Tssr131873 15 77800757 to 77800791 34 + TSS region transcription start site region 131873
Tssr131874 15 77800815 to 77800826 11 + TSS region transcription start site region 131874
Tssr131875 15 77805943 to 77805954 11 + TSS region transcription start site region 131875
Tssr135125 15 77813151 to 77813167 16 - TSS region transcription start site region 135125
Tssr135126 15 77813203 to 77813237 34 - TSS region transcription start site region 135126
Tssr135127 15 77815916 to 77815927 11 - TSS region transcription start site region 135127
Tssr131876 15 77816354 to 77816401 47 + TSS region transcription start site region 131876
Tssr131877 15 77822473 to 77822482 9 + TSS region transcription start site region 131877
Tssr135128 15 77829455 to 77829458 3 - TSS region transcription start site region 135128
Tssr135129 15 77829604 to 77829608 4 - TSS region transcription start site region 135129
9530001J02Rik 15 77835088 to 77836852 1764 unclassified gene RIKEN cDNA 9530001J02 gene
Tssr135130 15 77836161 to 77836174 13 - TSS region transcription start site region 135130
Tssr135131 15 77836241 to 77836268 27 - TSS region transcription start site region 135131
Tssr135132 15 77836288 to 77836316 28 - TSS region transcription start site region 135132
Tssr135133 15 77836831 to 77836832 1 - TSS region transcription start site region 135133
Tssr135134 15 77838572 to 77838576 4 - TSS region transcription start site region 135134
Tssr131878 15 77840271 to 77840276 5 + TSS region transcription start site region 131878
Tssr4645 15 77840614 to 77840646 32 - TSS region transcription start site region 4645
Gm22107 15 77840657 to 77840756 99 - snRNA gene predicted gene, 22107
Cpgi7274 15 77841068 to 77842726 1658 CpG island CpG island 7274
Tssr135135 15 77842047 to 77842058 11 - TSS region transcription start site region 135135
Tssr135136 15 77842088 to 77842123 35 - TSS region transcription start site region 135136
Tssr135137 15 77842133 to 77842154 21 - TSS region transcription start site region 135137
Tssr135138 15 77849561 to 77849601 40 - TSS region transcription start site region 135138
Tssr131879 15 77849778 to 77849819 41 + TSS region transcription start site region 131879
Tssr131880 15 77855543 to 77855592 49 + TSS region transcription start site region 131880
Cpgi7275 15 77857663 to 77858106 443 CpG island CpG island 7275
Tssr135139 15 77857752 to 77857765 13 - TSS region transcription start site region 135139
Tssr131881 15 77857922 to 77857940 18 + TSS region transcription start site region 131881
Tssr135140 15 77874941 to 77874967 26 - TSS region transcription start site region 135140
Tssr131882 15 77881969 to 77882008 39 + TSS region transcription start site region 131882
Cpgi7276 15 77905307 to 77905622 315 CpG island CpG island 7276
Tssr135141 15 77905382 to 77905399 17 - TSS region transcription start site region 135141
Tssr131883 15 77905554 to 77905596 42 + TSS region transcription start site region 131883
Tssr131884 15 77905621 to 77905634 13 + TSS region transcription start site region 131884
Tssr131885 15 77906034 to 77906041 7 + TSS region transcription start site region 131885
Tssr131886 15 77911330 to 77911341 11 + TSS region transcription start site region 131886
Txn2 15 77915051 to 77928994 13943 - protein coding gene thioredoxin 2
Tssr135142 15 77915368 to 77915413 45 - TSS region transcription start site region 135142
Tssr135143 15 77915436 to 77915454 18 - TSS region transcription start site region 135143
Tssr135144 15 77915632 to 77915651 19 - TSS region transcription start site region 135144
Tssr135145 15 77915675 to 77915697 22 - TSS region transcription start site region 135145
Tssr135146 15 77915721 to 77915739 18 - TSS region transcription start site region 135146
Tssr135147 15 77927863 to 77927895 32 - TSS region transcription start site region 135147
Cpgi7277 15 77928611 to 77929212 601 CpG island CpG island 7277
Tssr135148 15 77928697 to 77928717 20 - TSS region transcription start site region 135148
Tssr135149 15 77928925 to 77929011 86 - TSS region transcription start site region 135149
Tssr131887 15 77929229 to 77929250 21 + TSS region transcription start site region 131887
Tssr4646 15 77933618 to 77933642 24 - TSS region transcription start site region 4646
Foxred2 15 77940522 to 77956722 16200 - protein coding gene FAD-dependent oxidoreductase domain containing 2
Tssr4647 15 77942122 to 77942126 4 - TSS region transcription start site region 4647
Tssr135150 15 77945717 to 77945733 16 - TSS region transcription start site region 135150
Tssr135151 15 77945765 to 77945780 15 - TSS region transcription start site region 135151
Tssr135152 15 77945790 to 77945800 10 - TSS region transcription start site region 135152
Tssr135153 15 77945872 to 77945894 22 - TSS region transcription start site region 135153
Cpgi7278 15 77955573 to 77956949 1376 CpG island CpG island 7278
Tssr135154 15 77956448 to 77956469 21 - TSS region transcription start site region 135154
Tssr135155 15 77956658 to 77956723 65 - TSS region transcription start site region 135155
Tssr131888 15 77956795 to 77956808 13 + TSS region transcription start site region 131888
Eif3d 15 77958998 to 77970813 11815 - protein coding gene eukaryotic translation initiation factor 3, subunit D
Gm17638 15 77961674 to 77967126 5452 + antisense lncRNA gene predicted gene, 17638
Tssr131889 15 77966673 to 77966696 23 + TSS region transcription start site region 131889
Tssr135156 15 77967592 to 77967599 7 - TSS region transcription start site region 135156
Tssr135157 15 77969768 to 77969774 6 - TSS region transcription start site region 135157
Cpgi7279 15 77970149 to 77971479 1330 CpG island CpG island 7279
Tssr135158 15 77970512 to 77970561 49 - TSS region transcription start site region 135158
Tssr135159 15 77970730 to 77970743 13 - TSS region transcription start site region 135159
Tssr135160 15 77970750 to 77970824 74 - TSS region transcription start site region 135160
Cacng2 15 77991919 to 78119474 127555 - protein coding gene calcium channel, voltage-dependent, gamma subunit 2
Tssr135161 15 77991982 to 77992006 24 - TSS region transcription start site region 135161
Tssr135162 15 77994898 to 77994904 6 - TSS region transcription start site region 135162
Cpgi7280 15 77995060 to 77995766 706 CpG island CpG island 7280
Tssr135163 15 77995069 to 77995085 16 - TSS region transcription start site region 135163
Tssr135164 15 77995090 to 77995107 17 - TSS region transcription start site region 135164
Gm46520 15 78012298 to 78054407 42109 + lncRNA gene predicted gene, 46520
Tssr131890 15 78044111 to 78044118 7 + TSS region transcription start site region 131890
Tssr131891 15 78044136 to 78044147 11 + TSS region transcription start site region 131891
Cpgi7281 15 78096328 to 78096482 154 CpG island CpG island 7281