Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:77289852-77768316

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rbfox2 15 77078990 to 77307004 228014 - protein coding gene RNA binding protein, fox-1 homolog (C. elegans) 2
Cpgi7268 15 77305930 to 77307468 1538 CpG island CpG island 7268
Tssr135090 15 77306573 to 77306607 34 - TSS region transcription start site region 135090
Tssr135091 15 77306612 to 77306651 39 - TSS region transcription start site region 135091
Tssr135092 15 77306879 to 77306927 48 - TSS region transcription start site region 135092
Tssr135093 15 77306962 to 77306969 7 - TSS region transcription start site region 135093
Tssr135094 15 77307005 to 77307032 27 - TSS region transcription start site region 135094
Tssr135095 15 77307043 to 77307058 15 - TSS region transcription start site region 135095
Tssr135096 15 77307067 to 77307103 36 - TSS region transcription start site region 135096
Gm41352 15 77313609 to 77324452 10843 + lncRNA gene predicted gene, 41352
Cpgi7269 15 77336498 to 77336911 413 CpG island CpG island 7269
Cpgi7270 15 77343043 to 77343375 332 CpG island CpG island 7270
Tssr131861 15 77356456 to 77356500 44 + TSS region transcription start site region 131861
Tssr131862 15 77357097 to 77357100 3 + TSS region transcription start site region 131862
Tssr131863 15 77357952 to 77357954 2 + TSS region transcription start site region 131863
Cpgi7271 15 77358489 to 77358970 481 CpG island CpG island 7271
Gm49436 15 77365898 to 77366699 801 - unclassified gene predicted gene, 49436
Tssr135097 15 77367140 to 77367150 10 - TSS region transcription start site region 135097
Cpgi7272 15 77368239 to 77368483 244 CpG island CpG island 7272
Gm3787 15 77369494 to 77371010 1516 - lncRNA gene predicted gene 3787
Tssr131864 15 77370827 to 77370832 5 + TSS region transcription start site region 131864
Gm41354 15 77371212 to 77373878 2666 + lncRNA gene predicted gene, 41354
Tssr135098 15 77376910 to 77376919 9 - TSS region transcription start site region 135098
Gm41353 15 77377860 to 77379351 1491 + lncRNA gene predicted gene, 41353
Apol7a 15 77388219 to 77399110 10891 - protein coding gene apolipoprotein L 7a
Gm20688 15 77391702 to 77392381 679 - sense intronic lncRNA gene predicted gene 20688
Tssr135099 15 77399211 to 77399235 24 - TSS region transcription start site region 135099
Apol9a 15 77403789 to 77411080 7291 - protein coding gene apolipoprotein L 9a
Gm36194 15 77418553 to 77423599 5046 + lncRNA gene predicted gene, 36194
Apol7b 15 77422209 to 77447460 25251 - protein coding gene apolipoprotein L 7b
4930571N24Rik 15 77427979 to 77461968 33989 + unclassified gene RIKEN cDNA 4930571N24 gene
Gm6506 15 77443289 to 77444420 1131 - pseudogene predicted gene 6506
Gm8208 15 77444674 to 77445219 545 - pseudogene predicted gene 8208
Gm49551 15 77468202 to 77468459 257 + pseudogene predicted gene, 49551
Tssr131865 15 77477044 to 77477048 4 + TSS region transcription start site region 131865
Apol10a 15 77477047 to 77491069 14022 + protein coding gene apolipoprotein L 10A
Apol11a 15 77508129 to 77517874 9745 + protein coding gene apolipoprotein L 11a
Tssr131866 15 77508268 to 77508270 2 + TSS region transcription start site region 131866
Apol7c 15 77524852 to 77533316 8464 - protein coding gene apolipoprotein L 7c
Tssr135100 15 77533312 to 77533317 5 - TSS region transcription start site region 135100
1700025B11Rik 15 77558239 to 77561892 3653 - protein coding gene RIKEN cDNA 1700025B11 gene
Tssr135101 15 77561857 to 77561887 30 - TSS region transcription start site region 135101
Apol10b 15 77583819 to 77596125 12306 - protein coding gene apolipoprotein L 10B
Tssr135102 15 77584900 to 77584905 5 - TSS region transcription start site region 135102
Tssr135103 15 77596110 to 77596131 21 - TSS region transcription start site region 135103
Gm36245 15 77599258 to 77602854 3596 + lncRNA gene predicted gene, 36245
Tssr131867 15 77618965 to 77618970 5 + TSS region transcription start site region 131867
Gm8221 15 77621834 to 77626637 4803 + pseudogene predicted gene 8221
Apol11b 15 77633951 to 77643286 9335 - protein coding gene apolipoprotein L 11b
Apol10c-ps 15 77656048 to 77656836 788 - pseudogene apolipoprotein L 10C, pseudogene
Tssr135104 15 77659844 to 77659849 5 - TSS region transcription start site region 135104
Gm49407 15 77668493 to 77668736 243 - pseudogene predicted gene, 49407
Apol7e 15 77698857 to 77719285 20428 + protein coding gene apolipoprotein L 7e
Tssr131868 15 77698904 to 77698910 6 + TSS region transcription start site region 131868
Gm8233 15 77701124 to 77701675 551 + pseudogene predicted gene 8233
Gm18911 15 77702003 to 77703000 997 + pseudogene predicted gene, 18911
Gm36329 15 77717897 to 77723009 5112 - antisense lncRNA gene predicted gene, 36329
Apol9b 15 77729072 to 77736382 7310 + protein coding gene apolipoprotein L 9b
Tssr131869 15 77729091 to 77729096 5 + TSS region transcription start site region 131869
Tssr131870 15 77729152 to 77729172 20 + TSS region transcription start site region 131870
Tssr131871 15 77733610 to 77733654 44 + TSS region transcription start site region 131871
Tssr4644 15 77740751 to 77740769 18 + TSS region transcription start site region 4644
Gm49410 15 77740761 to 77743890 3129 + unclassified gene predicted gene, 49410
Apol8 15 77747798 to 77757003 9205 - protein coding gene apolipoprotein L 8
Tssr135105 15 77755218 to 77755265 47 - TSS region transcription start site region 135105
Tssr135106 15 77755266 to 77755281 15 - TSS region transcription start site region 135106
Myh9 15 77760587 to 77842175 81588 - protein coding gene myosin, heavy polypeptide 9, non-muscle
Tssr135107 15 77760786 to 77760802 16 - TSS region transcription start site region 135107
Tssr135108 15 77760867 to 77760950 83 - TSS region transcription start site region 135108
Tssr135109 15 77760951 to 77760963 12 - TSS region transcription start site region 135109
Tssr135110 15 77760990 to 77761013 23 - TSS region transcription start site region 135110
Tssr135111 15 77761078 to 77761111 33 - TSS region transcription start site region 135111
Tssr135112 15 77761767 to 77761783 16 - TSS region transcription start site region 135112
Tssr135113 15 77763831 to 77763843 12 - TSS region transcription start site region 135113
Cpgi7273 15 77764329 to 77764638 309 CpG island CpG island 7273
Tssr135114 15 77765766 to 77765780 14 - TSS region transcription start site region 135114
Tssr135115 15 77766829 to 77766861 32 - TSS region transcription start site region 135115
Tssr135116 15 77767567 to 77767593 26 - TSS region transcription start site region 135116
Tssr135117 15 77767643 to 77767656 13 - TSS region transcription start site region 135117