Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:28147467-30600533

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Toa1 15 20807266 to 28493921 7686655 QTL testicular oocyte appearance 1
D15Mit163 15 28153198 to 28153460 262 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 163
D15Mit163.2 15 28153389 to 28153506 117 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 163.2
Gm49233 15 28154101 to 28155462 1361 - lincRNA gene predicted gene, 49233
Cpgi6990 15 28154820 to 28155195 375 CpG island CpG island 6990
Tssr130907 15 28154925 to 28154968 43 + TSS region transcription start site region 130907
Gm49234 15 28190894 to 28192122 1228 - unclassified gene predicted gene, 49234
Tssr130908 15 28203726 to 28203742 16 + TSS region transcription start site region 130908
Dnah5 15 28203752 to 28472052 268300 + protein coding gene dynein, axonemal, heavy chain 5
Tssr130909 15 28203799 to 28203811 12 + TSS region transcription start site region 130909
Tssr133912 15 28229877 to 28229891 14 - TSS region transcription start site region 133912
Tssr130910 15 28325850 to 28325853 3 + TSS region transcription start site region 130910
D15Mit18 15 28493790 to 28493921 131 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 18
Gm49278 15 28504755 to 28505191 436 - pseudogene predicted gene, 49278
Gm49279 15 28540214 to 28540471 257 - pseudogene predicted gene, 49279
Tssr130911 15 28576471 to 28576478 7 + TSS region transcription start site region 130911
D15Mit21 15 28626204 to 28626305 101 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 21
Tssr4568 15 28698042 to 28698044 2 + TSS region transcription start site region 4568
Gm8484 15 28718667 to 28720086 1419 - pseudogene predicted gene 8484
Tssr130912 15 28823513 to 28823516 3 + TSS region transcription start site region 130912
Gm49280 15 28855004 to 28857772 2768 + unclassified gene predicted gene, 49280
Gm31687 15 28858890 to 28874657 15767 + lncRNA gene predicted gene, 31687
D15Mit276 15 29103755 to 29103890 135 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-276
D15Mit82 15 29242680 to 29242830 150 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 82
Gm41281 15 29372467 to 29375533 3066 - lncRNA gene predicted gene, 41281
Cpgi6991 15 29386930 to 29387140 210 CpG island CpG island 6991
Tssr4569 15 29506445 to 29506446 1 - TSS region transcription start site region 4569
D15Mit201 15 29512834 to 29512932 98 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 201
Mir3964 15 29713331 to 29713404 73 - miRNA gene microRNA 3964
Gm23033 15 29888341 to 29888474 133 - snoRNA gene predicted gene, 23033
Gm49281 15 29948277 to 29948370 93 - pseudogene predicted gene, 49281
Gm24554 15 30004062 to 30004134 72 - snoRNA gene predicted gene, 24554
Gm23327 15 30004186 to 30004263 77 - snoRNA gene predicted gene, 23327
Gm5212 15 30012294 to 30013065 771 + pseudogene predicted gene 5212
Tssr4570 15 30033556 to 30033582 26 + TSS region transcription start site region 4570
Gm26163 15 30052379 to 30052556 177 - snoRNA gene predicted gene, 26163
Cpgi6992 15 30172213 to 30173667 1454 CpG island CpG island 6992
Tssr130913 15 30172519 to 30172567 48 + TSS region transcription start site region 130913
Tssr130914 15 30172570 to 30172600 30 + TSS region transcription start site region 130914
Ctnnd2 15 30172593 to 31029341 856748 + protein coding gene catenin (cadherin associated protein), delta 2
Tssr130915 15 30172654 to 30172665 11 + TSS region transcription start site region 130915
Tssr130916 15 30172678 to 30172731 53 + TSS region transcription start site region 130916
Tssr130917 15 30172741 to 30172768 27 + TSS region transcription start site region 130917
Tssr130918 15 30172922 to 30172938 16 + TSS region transcription start site region 130918
Tssr130919 15 30172943 to 30172970 27 + TSS region transcription start site region 130919
Tssr130920 15 30172977 to 30173000 23 + TSS region transcription start site region 130920
Tssr130921 15 30173083 to 30173114 31 + TSS region transcription start site region 130921
Gm31953 15 30173194 to 30186824 13630 + lncRNA gene predicted gene, 31953
Tssr133913 15 30173491 to 30173496 5 - TSS region transcription start site region 133913
Tssr130922 15 30184751 to 30184755 4 + TSS region transcription start site region 130922
Tssr130923 15 30187959 to 30187964 5 + TSS region transcription start site region 130923
D15Mit249 15 30239353 to 30239623 270 DNA segment DNA Segment, Chr 15, Massachusetts Institute of Technology-249
D15Mit98 15 30273538 to 30273687 149 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 98
Tssr130924 15 30303451 to 30303454 3 + TSS region transcription start site region 130924
Tssr130925 15 30333207 to 30333214 7 + TSS region transcription start site region 130925
Tssr130926 15 30333831 to 30333848 17 + TSS region transcription start site region 130926
Tssr130927 15 30338455 to 30338458 3 + TSS region transcription start site region 130927
D15Mit131 15 30374203 to 30374342 139 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 131
Gm49283 15 30428844 to 30430233 1389 + unclassified gene predicted gene, 49283
Tssr130928 15 30457591 to 30457599 8 + TSS region transcription start site region 130928
Tssr130929 15 30457627 to 30457710 83 + TSS region transcription start site region 130929
Tssr130930 15 30457851 to 30457868 17 + TSS region transcription start site region 130930
Tssr133914 15 30458815 to 30458840 25 - TSS region transcription start site region 133914
Tssr130931 15 30485863 to 30485880 17 + TSS region transcription start site region 130931
Tssr130932 15 30496802 to 30496808 6 + TSS region transcription start site region 130932
Tssr130933 15 30498580 to 30498583 3 + TSS region transcription start site region 130933
Tssr130934 15 30500579 to 30500584 5 + TSS region transcription start site region 130934
Gm41284 15 30516933 to 30534114 17181 + lncRNA gene predicted gene, 41284
Tssr130935 15 30539583 to 30539596 13 + TSS region transcription start site region 130935
D15Mit203 15 30589760 to 30589835 75 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 203
Gm23956 15 30590287 to 30590405 118 + rRNA gene predicted gene, 23956
4930570B17Rik 15 30597094 to 30626621 29527 - antisense lncRNA gene RIKEN cDNA 4930570B17 gene