Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:27788228-28148240

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trio 15 27730651 to 28025848 295197 - protein coding gene triple functional domain (PTPRF interacting)
Tssr133884 15 27788247 to 27788258 11 - TSS region transcription start site region 133884
Tssr133885 15 27788312 to 27788421 109 - TSS region transcription start site region 133885
Tssr133886 15 27788513 to 27788525 12 - TSS region transcription start site region 133886
Tssr133887 15 27788540 to 27788558 18 - TSS region transcription start site region 133887
Tssr133888 15 27788570 to 27788589 19 - TSS region transcription start site region 133888
Tssr133889 15 27788607 to 27788618 11 - TSS region transcription start site region 133889
Tssr130900 15 27796215 to 27796223 8 + TSS region transcription start site region 130900
Tssr130901 15 27796797 to 27796824 27 + TSS region transcription start site region 130901
Tssr130902 15 27826613 to 27826618 5 + TSS region transcription start site region 130902
Tssr133890 15 27840668 to 27840671 3 - TSS region transcription start site region 133890
Tssr4567 15 27855698 to 27855723 25 + TSS region transcription start site region 4567
Cpgi6987 15 27856131 to 27856701 570 CpG island CpG island 6987
Gm9891 15 27856307 to 27857113 806 + protein coding gene predicted gene 9891
Tssr133891 15 27856427 to 27856463 36 - TSS region transcription start site region 133891
Tssr133892 15 27856466 to 27856485 19 - TSS region transcription start site region 133892
Gm20555 15 27863799 to 27867231 3432 - unclassified gene predicted gene, 20555
Tssr133893 15 27876455 to 27876478 23 - TSS region transcription start site region 133893
Tssr133894 15 27876479 to 27876524 45 - TSS region transcription start site region 133894
Cpgi6988 15 27923660 to 27923922 262 CpG island CpG island 6988
Tssr133895 15 27923692 to 27923739 47 - TSS region transcription start site region 133895
Tssr130903 15 27924243 to 27924256 13 + TSS region transcription start site region 130903
Tssr130904 15 27924296 to 27924309 13 + TSS region transcription start site region 130904
D15Mit45 15 27967386 to 27967550 164 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 45
Tssr133896 15 27968201 to 27968212 11 - TSS region transcription start site region 133896
Tssr133897 15 27968228 to 27968240 12 - TSS region transcription start site region 133897
Tssr133898 15 27968260 to 27968267 7 - TSS region transcription start site region 133898
Tssr130905 15 27968374 to 27968384 10 + TSS region transcription start site region 130905
Gm29975 15 27970010 to 27988987 18977 - protein coding gene predicted gene, 29975
Tssr133899 15 27984779 to 27984783 4 - TSS region transcription start site region 133899
Tssr133900 15 27995320 to 27995338 18 - TSS region transcription start site region 133900
Tssr133901 15 28022187 to 28022190 3 - TSS region transcription start site region 133901
Cpgi6989 15 28023994 to 28026457 2463 CpG island CpG island 6989
Tssr133902 15 28024457 to 28024473 16 - TSS region transcription start site region 133902
Tssr133903 15 28025834 to 28025879 45 - TSS region transcription start site region 133903
Tssr133904 15 28025894 to 28025924 30 - TSS region transcription start site region 133904
Tssr133905 15 28025926 to 28025950 24 - TSS region transcription start site region 133905
Tssr133906 15 28025952 to 28025965 13 - TSS region transcription start site region 133906
Tssr133907 15 28025967 to 28025981 14 - TSS region transcription start site region 133907
Tssr133908 15 28025982 to 28026001 19 - TSS region transcription start site region 133908
Tssr133909 15 28026010 to 28026021 11 - TSS region transcription start site region 133909
Gm41280 15 28027388 to 28031152 3764 + lncRNA gene predicted gene, 41280
Gm19883 15 28041009 to 28041489 480 + pseudogene predicted gene, 19883
Gm31458 15 28045928 to 28066685 20757 - lincRNA gene predicted gene, 31458
Tssr133910 15 28058919 to 28058922 3 - TSS region transcription start site region 133910
Tssr133911 15 28066665 to 28066674 9 - TSS region transcription start site region 133911
Tssr130906 15 28081468 to 28081473 5 + TSS region transcription start site region 130906
Gm8472 15 28123259 to 28123621 362 - pseudogene predicted gene 8472