Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:102895359-102995427

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi7834 15 102910177 to 102910591 414 CpG island CpG island 7834
Cpgi7835 15 102913087 to 102913350 263 CpG island CpG island 7835
Cpgi7836 15 102918470 to 102918621 151 CpG island CpG island 7836
Cpgi7837 15 102920790 to 102922290 1500 CpG island CpG island 7837
Tssr133470 15 102921121 to 102921132 11 + TSS region transcription start site region 133470
Hoxc13 15 102921131 to 102928814 7683 + protein coding gene homeobox C13
Tssr133471 15 102921137 to 102921142 5 + TSS region transcription start site region 133471
Tssr133472 15 102921147 to 102921169 22 + TSS region transcription start site region 133472
Tssr133473 15 102921172 to 102921199 27 + TSS region transcription start site region 133473
Cpgi7838 15 102927053 to 102927518 465 CpG island CpG island 7838
Tssr133474 15 102928086 to 102928092 6 + TSS region transcription start site region 133474
Tssr4741 15 102928154 to 102928200 46 + TSS region transcription start site region 4741
Cpgi7839 15 102931887 to 102932042 155 CpG island CpG island 7839
Cpgi7840 15 102934530 to 102934711 181 CpG island CpG island 7840
Gm36820 15 102934805 to 102936471 1666 - lncRNA gene predicted gene, 36820
Cpgi7841 15 102934934 to 102935283 349 CpG island CpG island 7841
Cpgi7842 15 102936662 to 102937542 880 CpG island CpG island 7842
Tssr133475 15 102936816 to 102936834 18 + TSS region transcription start site region 133475
Tssr133476 15 102936842 to 102936854 12 + TSS region transcription start site region 133476
Hoxc12 15 102936853 to 102938517 1664 + protein coding gene homeobox C12
Cpgi7843 15 102938189 to 102938508 319 CpG island CpG island 7843
Cpgi7844 15 102939447 to 102939829 382 CpG island CpG island 7844
Cpgi7845 15 102942704 to 102943510 806 CpG island CpG island 7845
Hotair 15 102944062 to 102947730 3668 - lincRNA gene HOX transcript antisense RNA (non-protein coding)
Gm27337 15 102945359 to 102945427 68 + unclassified non-coding RNA gene predicted gene, 27337
Gm27443 15 102947496 to 102947593 97 + unclassified non-coding RNA gene predicted gene, 27443
Gm28011 15 102949434 to 102949608 174 + unclassified non-coding RNA gene predicted gene, 28011
Cpgi7846 15 102949725 to 102950051 326 CpG island CpG island 7846
Gm27535 15 102949776 to 102949932 156 + unclassified non-coding RNA gene predicted gene, 27535
Cpgi7847 15 102954301 to 102955336 1035 CpG island CpG island 7847
Tssr4742 15 102954473 to 102954496 23 + TSS region transcription start site region 4742
Hoxc11 15 102954526 to 102956701 2175 + protein coding gene homeobox C11
Cpgi7848 15 102955749 to 102956597 848 CpG island CpG island 7848
Cpgi7849 15 102963706 to 102964067 361 CpG island CpG island 7849
Cpgi7850 15 102966441 to 102967915 1474 CpG island CpG island 7850
Tssr133477 15 102966739 to 102966751 12 + TSS region transcription start site region 133477
Tssr133478 15 102966752 to 102966774 22 + TSS region transcription start site region 133478
Tssr133479 15 102966794 to 102966812 18 + TSS region transcription start site region 133479
Hoxc10 15 102966796 to 102971893 5097 + protein coding gene homeobox C10
Tssr133480 15 102966857 to 102966871 14 + TSS region transcription start site region 133480
Tssr133481 15 102971436 to 102971474 38 + TSS region transcription start site region 133481
Tssr133482 15 102972229 to 102972235 6 + TSS region transcription start site region 133482
Cpgi7851 15 102972346 to 102972691 345 CpG island CpG island 7851
Mir196a-2 15 102973350 to 102973434 84 + miRNA gene microRNA 196a-2
Cpgi7852 15 102975705 to 102977670 1965 CpG island CpG island 7852
Gm4200 15 102976255 to 102978186 1931 protein coding gene predicted gene 4200
Hoxc9 15 102977032 to 102984444 7412 + protein coding gene homeobox C9
Tssr136719 15 102977463 to 102977478 15 - TSS region transcription start site region 136719
Cpgi7853 15 102978921 to 102979092 171 CpG island CpG island 7853
Tssr136720 15 102979296 to 102979329 33 - TSS region transcription start site region 136720
Gm36878 15 102980480 to 102981242 762 - lncRNA gene predicted gene, 36878
Cpgi7854 15 102981172 to 102982593 1421 CpG island CpG island 7854
Tssr133483 15 102981582 to 102981598 16 + TSS region transcription start site region 133483
Tssr133484 15 102981604 to 102981641 37 + TSS region transcription start site region 133484
Tssr133485 15 102982097 to 102982118 21 + TSS region transcription start site region 133485
Gm29852 15 102986689 to 102990306 3617 - lncRNA gene predicted gene, 29852
D15Mit16.1 15 102987916 to 102988038 122 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 16.1
D15Mit16 15 102988005 to 102988123 118 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 16
Sluc34b 15 102988005 to 102988123 118 QTL susceptibility to lung cancer 34b
Sluc34a 15 102988005 to 102988123 118 QTL susceptibility to lung cancer 34a
Bmca 15 102988005 to 102988123 118 QTL bile mucin accumulation
D15Mit16.2 15 102988108 to 102988222 114 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 16.2
Hyplip2 15 102988123 to 12402117 -90586006 QTL hyperlipidemia 2
Cal6 15 102988123 to 94974879 -8013244 heritable phenotypic marker caracul-like 6
Sluc34 15 102988123 to 97987052 -5001071 QTL susceptibility to lung cancer 34
Shar 15 102988123 to 99363421 -3624702 heritable phenotypic marker shiny and rough
Tssr133486 15 102988290 to 102988291 1 + TSS region transcription start site region 133486
Cpgi7855 15 102990089 to 102991328 1239 CpG island CpG island 7855
Tssr133487 15 102990481 to 102990492 11 + TSS region transcription start site region 133487
Tssr133488 15 102990515 to 102990530 15 + TSS region transcription start site region 133488
Tssr133489 15 102990533 to 102990575 42 + TSS region transcription start site region 133489
Tssr133490 15 102990576 to 102990590 14 + TSS region transcription start site region 133490
Hoxc8 15 102990607 to 102994111 3504 + protein coding gene homeobox C8
Tssr133491 15 102990863 to 102990882 19 + TSS region transcription start site region 133491
Tssr133492 15 102990908 to 102990909 1 + TSS region transcription start site region 133492
Tssr133493 15 102990915 to 102990925 10 + TSS region transcription start site region 133493
Tssr133494 15 102990935 to 102990940 5 + TSS region transcription start site region 133494
Tssr133495 15 102990949 to 102990952 3 + TSS region transcription start site region 133495
Tssr133496 15 102990972 to 102990986 14 + TSS region transcription start site region 133496
Tssr133497 15 102990994 to 102991000 6 + TSS region transcription start site region 133497
Tssr133498 15 102991004 to 102991009 5 + TSS region transcription start site region 133498
Tssr133499 15 102991158 to 102991176 18 + TSS region transcription start site region 133499
Skull22 15 102993114 to 102993272 158 QTL skull morphology 22
D15Mit15 15 102993114 to 102993272 158 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 15
Epfpq3 15 102993272 to 78716903 -24276369 QTL epididymal fat percentage QTL 3
W3q6 15 102993272 to 78716903 -24276369 QTL weight 3 weeks QTL 6