Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 15:100970459-103350701

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968 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scn8a 15 100869858 to 101045938 176080 + protein coding gene sodium channel, voltage-gated, type VIII, alpha
Cpgi7760 15 100983409 to 100984283 874 CpG island CpG island 7760
Cpgi7761 15 101015686 to 101016088 402 CpG island CpG island 7761
Cpgi7762 15 101039458 to 101040773 1315 CpG island CpG island 7762
Tssr133179 15 101040859 to 101040871 12 + TSS region transcription start site region 133179
Tssr133180 15 101040907 to 101040922 15 + TSS region transcription start site region 133180
Tssr133181 15 101041035 to 101041053 18 + TSS region transcription start site region 133181
Tssr133182 15 101041103 to 101041140 37 + TSS region transcription start site region 133182
Cpgi7763 15 101045987 to 101047612 1625 CpG island CpG island 7763
Gm47841 15 101046342 to 101047397 1055 - protein coding gene predicted gene, 47841
Tssr136507 15 101047362 to 101047376 14 - TSS region transcription start site region 136507
Tssr136508 15 101047380 to 101047385 5 - TSS region transcription start site region 136508
Tssr136509 15 101047401 to 101047404 3 - TSS region transcription start site region 136509
Tssr136510 15 101047420 to 101047429 9 - TSS region transcription start site region 136510
Fignl2 15 101050194 to 101078567 28373 - protein coding gene fidgetin-like 2
Cpgi7764 15 101052151 to 101054590 2439 CpG island CpG island 7764
Tssr136511 15 101052178 to 101052206 28 - TSS region transcription start site region 136511
Tssr136512 15 101052251 to 101052264 13 - TSS region transcription start site region 136512
Tssr136513 15 101054325 to 101054344 19 - TSS region transcription start site region 136513
Cpgi7765 15 101077466 to 101079530 2064 CpG island CpG island 7765
Tssr133183 15 101077881 to 101077920 39 + TSS region transcription start site region 133183
Tssr136514 15 101078369 to 101078380 11 - TSS region transcription start site region 136514
Tssr136515 15 101078410 to 101078419 9 - TSS region transcription start site region 136515
Tssr136516 15 101078489 to 101078513 24 - TSS region transcription start site region 136516
Tssr136517 15 101078807 to 101078830 23 - TSS region transcription start site region 136517
Tssr136518 15 101078882 to 101078932 50 - TSS region transcription start site region 136518
Cpgi7766 15 101097987 to 101098363 376 CpG island CpG island 7766
Gm41402 15 101103007 to 101106065 3058 + lncRNA gene predicted gene, 41402
Tssr133184 15 101115738 to 101115753 15 + TSS region transcription start site region 133184
Ankrd33 15 101115755 to 101120040 4285 + protein coding gene ankyrin repeat domain 33
Tssr133185 15 101115773 to 101115786 13 + TSS region transcription start site region 133185
Tssr133186 15 101115796 to 101115805 9 + TSS region transcription start site region 133186
Tssr4724 15 101115823 to 101115831 8 + TSS region transcription start site region 4724
Tssr136519 15 101122335 to 101122339 4 - TSS region transcription start site region 136519
Acvrl1 15 101128522 to 101145336 16814 + protein coding gene activin A receptor, type II-like 1
Tssr133187 15 101128525 to 101128536 11 + TSS region transcription start site region 133187
Tssr133188 15 101128544 to 101128562 18 + TSS region transcription start site region 133188
Tssr133189 15 101128574 to 101128587 13 + TSS region transcription start site region 133189
Cpgi7767 15 101128603 to 101129274 671 CpG island CpG island 7767
Tssr133190 15 101128927 to 101128948 21 + TSS region transcription start site region 133190
Gm16031 15 101129916 to 101131592 1676 - antisense lncRNA gene predicted gene 16031
Tssr133191 15 101134584 to 101134592 8 + TSS region transcription start site region 133191
Tssr133192 15 101134598 to 101134630 32 + TSS region transcription start site region 133192
Tssr133193 15 101134636 to 101134664 28 + TSS region transcription start site region 133193
Cpgi7768 15 101136964 to 101137602 638 CpG island CpG island 7768
Cpgi7769 15 101145430 to 101145809 379 CpG island CpG island 7769
Cpgi7770 15 101173511 to 101174999 1488 CpG island CpG island 7770
Tssr133194 15 101174096 to 101174148 52 + TSS region transcription start site region 133194
Acvr1b 15 101174125 to 101212601 38476 + protein coding gene activin A receptor, type 1B
Tssr133195 15 101186362 to 101186404 42 + TSS region transcription start site region 133195
Mir6962 15 101193869 to 101193931 62 + miRNA gene microRNA 6962
Tssr136520 15 101215683 to 101215687 4 - TSS region transcription start site region 136520
Tssr136521 15 101217270 to 101217278 8 - TSS region transcription start site region 136521
A330009N23Rik 15 101221195 to 101225186 3991 - antisense lncRNA gene RIKEN cDNA A330009N23 gene
AU021063 15 101221247 to 101222155 908 + lincRNA gene expressed sequence AU021063
Cpgi7771 15 101223966 to 101225218 1252 CpG island CpG island 7771
Grasp 15 101224207 to 101232756 8549 + protein coding gene GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein
Tssr133196 15 101224217 to 101224231 14 + TSS region transcription start site region 133196
Tssr133197 15 101224322 to 101224338 16 + TSS region transcription start site region 133197
Tssr136522 15 101224625 to 101224638 13 - TSS region transcription start site region 136522
Tssr136523 15 101225135 to 101225158 23 - TSS region transcription start site region 136523
Tssr136524 15 101225163 to 101225178 15 - TSS region transcription start site region 136524
Tssr4725 15 101228319 to 101228344 25 + TSS region transcription start site region 4725
Cpgi7772 15 101230540 to 101230761 221 CpG island CpG island 7772
Cpgi7773 15 101231110 to 101232152 1042 CpG island CpG island 7773
Tssr133198 15 101232204 to 101232208 4 + TSS region transcription start site region 133198
Tssr133199 15 101232403 to 101232433 30 + TSS region transcription start site region 133199
Cpgi7774 15 101239085 to 101239421 336 CpG island CpG island 7774
Tssr4726 15 101244175 to 101244177 2 + TSS region transcription start site region 4726
Cpgi7775 15 101246209 to 101246808 599 CpG island CpG island 7775
Tssr133200 15 101246572 to 101246587 15 + TSS region transcription start site region 133200
Tssr136525 15 101247191 to 101247221 30 - TSS region transcription start site region 136525
Tssr133201 15 101247401 to 101247412 11 + TSS region transcription start site region 133201
Tssr136526 15 101248141 to 101248144 3 - TSS region transcription start site region 136526
Tssr4727 15 101248270 to 101248283 13 + TSS region transcription start site region 4727
Tssr136527 15 101248717 to 101248726 9 - TSS region transcription start site region 136527
Tssr136528 15 101250266 to 101250275 9 - TSS region transcription start site region 136528
Tssr136529 15 101250363 to 101250396 33 - TSS region transcription start site region 136529
Cpgi7776 15 101253689 to 101254940 1251 CpG island CpG island 7776
Tssr136530 15 101253697 to 101253705 8 - TSS region transcription start site region 136530
Tssr136531 15 101253722 to 101253740 18 - TSS region transcription start site region 136531
Tssr136532 15 101253776 to 101253808 32 - TSS region transcription start site region 136532
Tssr136533 15 101253966 to 101253998 32 - TSS region transcription start site region 136533
Tssr133202 15 101254200 to 101254329 129 + TSS region transcription start site region 133202
Nr4a1 15 101254269 to 101274795 20526 + protein coding gene nuclear receptor subfamily 4, group A, member 1
Tssr133203 15 101254486 to 101254497 11 + TSS region transcription start site region 133203
Tssr133204 15 101254511 to 101254518 7 + TSS region transcription start site region 133204
Tssr136534 15 101256001 to 101256006 5 - TSS region transcription start site region 136534
Tssr136535 15 101256030 to 101256039 9 - TSS region transcription start site region 136535
Tssr136536 15 101256049 to 101256058 9 - TSS region transcription start site region 136536
Tssr136537 15 101256171 to 101256180 9 - TSS region transcription start site region 136537
Tssr136538 15 101256229 to 101256240 11 - TSS region transcription start site region 136538
Tssr133205 15 101256385 to 101256393 8 + TSS region transcription start site region 133205
Tssr133206 15 101256400 to 101256418 18 + TSS region transcription start site region 133206
Tssr136539 15 101256916 to 101256931 15 - TSS region transcription start site region 136539
Tssr133207 15 101257235 to 101257252 17 + TSS region transcription start site region 133207
Tssr133208 15 101258396 to 101258402 6 + TSS region transcription start site region 133208
Tssr136540 15 101258416 to 101258426 10 - TSS region transcription start site region 136540
Tssr133209 15 101258679 to 101258700 21 + TSS region transcription start site region 133209
Tssr133210 15 101260427 to 101260455 28 + TSS region transcription start site region 133210
Tssr133211 15 101260666 to 101260684 18 + TSS region transcription start site region 133211
Tssr133212 15 101260693 to 101260709 16 + TSS region transcription start site region 133212
Tssr136541 15 101261361 to 101261370 9 - TSS region transcription start site region 136541
Tssr136542 15 101261549 to 101261562 13 - TSS region transcription start site region 136542
Tssr133213 15 101261690 to 101261705 15 + TSS region transcription start site region 133213
Cpgi7777 15 101266103 to 101267248 1145 CpG island CpG island 7777
Tssr136543 15 101266520 to 101266529 9 - TSS region transcription start site region 136543
Tssr136544 15 101266533 to 101266564 31 - TSS region transcription start site region 136544
Tssr133214 15 101266839 to 101266859 20 + TSS region transcription start site region 133214
Tssr133215 15 101267100 to 101267112 12 + TSS region transcription start site region 133215
Tssr133216 15 101267128 to 101267143 15 + TSS region transcription start site region 133216
Tssr133217 15 101267245 to 101267246 1 + TSS region transcription start site region 133217
Tssr133218 15 101267854 to 101267874 20 + TSS region transcription start site region 133218
Tssr133219 15 101267875 to 101267896 21 + TSS region transcription start site region 133219
Tssr133220 15 101267984 to 101267991 7 + TSS region transcription start site region 133220
Tssr133221 15 101268027 to 101268051 24 + TSS region transcription start site region 133221
Tssr133222 15 101269387 to 101269416 29 + TSS region transcription start site region 133222
Tssr133223 15 101270076 to 101270106 30 + TSS region transcription start site region 133223
Tssr133224 15 101270119 to 101270124 5 + TSS region transcription start site region 133224
Tssr133225 15 101270130 to 101270140 10 + TSS region transcription start site region 133225
Tssr133226 15 101270151 to 101270158 7 + TSS region transcription start site region 133226
Tssr133227 15 101270159 to 101270171 12 + TSS region transcription start site region 133227
Tssr133228 15 101270177 to 101270187 10 + TSS region transcription start site region 133228
Tssr133229 15 101270188 to 101270225 37 + TSS region transcription start site region 133229
Tssr133230 15 101270266 to 101270284 18 + TSS region transcription start site region 133230
Tssr133231 15 101270298 to 101270310 12 + TSS region transcription start site region 133231
Tssr136545 15 101270299 to 101270310 11 - TSS region transcription start site region 136545
Tssr133232 15 101270317 to 101270337 20 + TSS region transcription start site region 133232
Tssr133233 15 101270345 to 101270358 13 + TSS region transcription start site region 133233
Tssr133234 15 101270363 to 101270384 21 + TSS region transcription start site region 133234
Tssr133235 15 101270396 to 101270426 30 + TSS region transcription start site region 133235
Tssr136546 15 101270421 to 101270431 10 - TSS region transcription start site region 136546
Tssr133236 15 101270445 to 101270465 20 + TSS region transcription start site region 133236
Tssr133237 15 101270467 to 101270496 29 + TSS region transcription start site region 133237
Tssr136547 15 101270497 to 101270506 9 - TSS region transcription start site region 136547
Tssr133238 15 101270500 to 101270514 14 + TSS region transcription start site region 133238
Tssr136548 15 101270507 to 101270523 16 - TSS region transcription start site region 136548
Tssr136549 15 101270541 to 101270548 7 - TSS region transcription start site region 136549
Tssr133239 15 101270542 to 101270577 35 + TSS region transcription start site region 133239
Tssr133240 15 101270634 to 101270645 11 + TSS region transcription start site region 133240
Tssr136550 15 101270647 to 101270664 17 - TSS region transcription start site region 136550
Tssr133241 15 101270651 to 101270654 3 + TSS region transcription start site region 133241
Tssr133242 15 101270659 to 101270666 7 + TSS region transcription start site region 133242
Tssr133243 15 101270685 to 101270687 2 + TSS region transcription start site region 133243
Tssr133244 15 101270706 to 101270717 11 + TSS region transcription start site region 133244
Tssr136551 15 101270723 to 101270769 46 - TSS region transcription start site region 136551
Tssr133245 15 101270750 to 101270763 13 + TSS region transcription start site region 133245
Tssr133246 15 101270775 to 101270793 18 + TSS region transcription start site region 133246
Tssr133247 15 101270863 to 101270874 11 + TSS region transcription start site region 133247
Tssr133248 15 101270883 to 101270892 9 + TSS region transcription start site region 133248
Tssr133249 15 101271734 to 101271749 15 + TSS region transcription start site region 133249
Tssr133250 15 101271768 to 101271779 11 + TSS region transcription start site region 133250
Tssr133251 15 101271799 to 101271813 14 + TSS region transcription start site region 133251
Tssr133252 15 101272146 to 101272156 10 + TSS region transcription start site region 133252
Tssr133253 15 101272157 to 101272166 9 + TSS region transcription start site region 133253
Tssr133254 15 101272177 to 101272202 25 + TSS region transcription start site region 133254
Tssr133255 15 101272210 to 101272234 24 + TSS region transcription start site region 133255
Tssr133256 15 101272251 to 101272264 13 + TSS region transcription start site region 133256
Tssr133257 15 101272269 to 101272277 8 + TSS region transcription start site region 133257
Tssr133258 15 101272721 to 101272736 15 + TSS region transcription start site region 133258
Tssr133259 15 101272738 to 101272743 5 + TSS region transcription start site region 133259
Tssr133260 15 101272756 to 101272763 7 + TSS region transcription start site region 133260
Tssr133261 15 101272766 to 101272773 7 + TSS region transcription start site region 133261
Tssr133262 15 101272777 to 101272785 8 + TSS region transcription start site region 133262
Tssr133263 15 101272798 to 101272809 11 + TSS region transcription start site region 133263
Tssr133264 15 101272817 to 101272826 9 + TSS region transcription start site region 133264
Tssr133265 15 101273026 to 101273039 13 + TSS region transcription start site region 133265
Tssr133266 15 101273051 to 101273058 7 + TSS region transcription start site region 133266
Tssr133267 15 101273092 to 101273100 8 + TSS region transcription start site region 133267
Tssr133268 15 101273139 to 101273157 18 + TSS region transcription start site region 133268
Tssr133269 15 101273311 to 101273316 5 + TSS region transcription start site region 133269
Tssr133270 15 101273973 to 101273983 10 + TSS region transcription start site region 133270
Tssr133271 15 101274022 to 101274033 11 + TSS region transcription start site region 133271
Tssr133272 15 101274082 to 101274087 5 + TSS region transcription start site region 133272
Tssr133273 15 101274121 to 101274131 10 + TSS region transcription start site region 133273
Tssr133274 15 101274188 to 101274199 11 + TSS region transcription start site region 133274
Tssr136552 15 101274371 to 101274381 10 - TSS region transcription start site region 136552
Tssr133275 15 101274438 to 101274447 9 + TSS region transcription start site region 133275
Tssr133276 15 101274600 to 101274610 10 + TSS region transcription start site region 133276
Tssr133277 15 101274682 to 101274689 7 + TSS region transcription start site region 133277
Tssr136553 15 101274785 to 101274791 6 - TSS region transcription start site region 136553
Cpgi7778 15 101283714 to 101284594 880 CpG island CpG island 7778
Tssr4728 15 101284176 to 101284178 2 + TSS region transcription start site region 4728
Tssr133278 15 101284280 to 101284308 28 + TSS region transcription start site region 133278
Atg101 15 101284301 to 101290947 6646 + protein coding gene autophagy related 101
Tssr133279 15 101286614 to 101286625 11 + TSS region transcription start site region 133279
Tssr133280 15 101293196 to 101293209 13 + TSS region transcription start site region 133280
Smim41 15 101293212 to 101297426 4214 + lincRNA gene small integral membrane protein 41
Tssr133281 15 101293218 to 101293237 19 + TSS region transcription start site region 133281
Tssr133282 15 101293466 to 101293480 14 + TSS region transcription start site region 133282
Gm41403 15 101297425 to 101298609 1184 - lncRNA gene predicted gene, 41403
Tssr133283 15 101316097 to 101316110 13 + TSS region transcription start site region 133283
Gm49499 15 101316102 to 101318538 2436 + unclassified gene predicted gene, 49499
Tssr133284 15 101322883 to 101322916 33 + TSS region transcription start site region 133284
Del(15Krt80-Krt18)1Tmm 15 101348315 to 102032026 683711 chromosomal deletion deletion, Chr 15, Thomas M Magin 1
Krt80 15 101348315 to 101370125 21810 - protein coding gene keratin 80
Tssr136554 15 101349447 to 101349452 5 - TSS region transcription start site region 136554
D15Mit173 15 101350617 to 101350765 148 DNA segment DNA segment, Chr 15, Massachusetts Institute of Technology 173
Tssr136555 15 101351274 to 101351283 9 - TSS region transcription start site region 136555
Gm35853 15 101358708 to 101405857 47149 + antisense lncRNA gene predicted gene, 35853