Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:55523542-55633561

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nrl 14 55518978 to 55524981 6003 - protein coding gene neural retina leucine zipper gene
Tssr128823 14 55524209 to 55524223 14 - TSS region transcription start site region 128823
Tssr128824 14 55524266 to 55524270 4 - TSS region transcription start site region 128824
Tssr128825 14 55524916 to 55524930 14 - TSS region transcription start site region 128825
Tssr128826 14 55524938 to 55524967 29 - TSS region transcription start site region 128826
Tssr128827 14 55524975 to 55524985 10 - TSS region transcription start site region 128827
Tssr128828 14 55524989 to 55524996 7 - TSS region transcription start site region 128828
Gm10876 14 55528828 to 55542399 13571 - antisense lncRNA gene predicted gene 10876
Gm49117 14 55537869 to 55539154 1285 + pseudogene predicted gene, 49117
Cpgi6496 14 55540182 to 55540586 404 CpG island CpG island 6496
Pck2 14 55540263 to 55550017 9754 + protein coding gene phosphoenolpyruvate carboxykinase 2 (mitochondrial)
Tssr125763 14 55540288 to 55540315 27 + TSS region transcription start site region 125763
Tssr125764 14 55540351 to 55540370 19 + TSS region transcription start site region 125764
Tssr125765 14 55540372 to 55540446 74 + TSS region transcription start site region 125765
Tssr125766 14 55540467 to 55540478 11 + TSS region transcription start site region 125766
Cpgi6497 14 55559761 to 55560936 1175 CpG island CpG island 6497
A730061H03Rik 14 55559942 to 55560406 464 - protein coding gene RIKEN cDNA A730061H03 gene
Tssr128829 14 55559963 to 55559980 17 - TSS region transcription start site region 128829
Tssr128830 14 55559983 to 55560008 25 - TSS region transcription start site region 128830
Tssr125767 14 55559993 to 55560004 11 + TSS region transcription start site region 125767
Dcaf11 14 55560006 to 55570065 10059 + protein coding gene DDB1 and CUL4 associated factor 11
Tssr125768 14 55560010 to 55560037 27 + TSS region transcription start site region 125768
Tssr128831 14 55560340 to 55560395 55 - TSS region transcription start site region 128831
Tssr125769 14 55560480 to 55560528 48 + TSS region transcription start site region 125769
Tssr125770 14 55560904 to 55560974 70 + TSS region transcription start site region 125770
Tssr125771 14 55561047 to 55561056 9 + TSS region transcription start site region 125771
Tssr125772 14 55561060 to 55561071 11 + TSS region transcription start site region 125772
Gm15932 14 55566159 to 55575991 9832 - antisense lncRNA gene predicted gene 15932
Tssr125773 14 55575534 to 55575568 34 + TSS region transcription start site region 125773
Tssr125774 14 55575619 to 55575660 41 + TSS region transcription start site region 125774
Fitm1 14 55575674 to 55576952 1278 + protein coding gene fat storage-inducing transmembrane protein 1
Tssr4431 14 55575705 to 55575710 5 + TSS region transcription start site region 4431
Tssr125775 14 55575715 to 55575801 86 + TSS region transcription start site region 125775
Cpgi6498 14 55575723 to 55576010 287 CpG island CpG island 6498
Tssr125776 14 55575805 to 55575852 47 + TSS region transcription start site region 125776
Tssr125777 14 55575855 to 55575866 11 + TSS region transcription start site region 125777
Cpgi6499 14 55578154 to 55578700 546 CpG island CpG island 6499
Tssr125778 14 55578161 to 55578180 19 + TSS region transcription start site region 125778
Tssr125779 14 55578356 to 55578366 10 + TSS region transcription start site region 125779
Tssr125780 14 55578422 to 55578437 15 + TSS region transcription start site region 125780
Tssr125781 14 55578444 to 55578539 95 + TSS region transcription start site region 125781
Psme1 14 55578494 to 55581527 3033 + protein coding gene proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
Tssr125782 14 55578542 to 55578561 19 + TSS region transcription start site region 125782
Tssr128832 14 55578823 to 55578841 18 - TSS region transcription start site region 128832
Tssr128833 14 55580125 to 55580164 39 - TSS region transcription start site region 128833
Tssr125783 14 55580914 to 55580948 34 + TSS region transcription start site region 125783
Emc9 14 55581516 to 55585302 3786 - protein coding gene ER membrane protein complex subunit 9
Cpgi6500 14 55584719 to 55585311 592 CpG island CpG island 6500
Tssr128834 14 55585250 to 55585317 67 - TSS region transcription start site region 128834
Psme2 14 55587441 to 55591113 3672 - protein coding gene proteasome (prosome, macropain) activator subunit 2 (PA28 beta)
Tssr128835 14 55588317 to 55588328 11 - TSS region transcription start site region 128835
Tssr128836 14 55589985 to 55590003 18 - TSS region transcription start site region 128836
Tssr128837 14 55590810 to 55590849 39 - TSS region transcription start site region 128837
Tssr128838 14 55590918 to 55590969 51 - TSS region transcription start site region 128838
Tssr125784 14 55590985 to 55591006 21 + TSS region transcription start site region 125784
Tssr128839 14 55591054 to 55591070 16 - TSS region transcription start site region 128839
Tssr128840 14 55591077 to 55591118 41 - TSS region transcription start site region 128840
Cpgi6501 14 55591123 to 55592436 1313 CpG island CpG island 6501
Tssr125785 14 55591161 to 55591175 14 + TSS region transcription start site region 125785
Tssr128841 14 55591479 to 55591506 27 - TSS region transcription start site region 128841
Tssr128842 14 55591540 to 55591574 34 - TSS region transcription start site region 128842
Rnf31 14 55591713 to 55603674 11961 + protein coding gene ring finger protein 31
Tssr125786 14 55591725 to 55591785 60 + TSS region transcription start site region 125786
Tssr125787 14 55591786 to 55591809 23 + TSS region transcription start site region 125787
Tssr125788 14 55591819 to 55591859 40 + TSS region transcription start site region 125788
Tssr128843 14 55603969 to 55604002 33 - TSS region transcription start site region 128843
Irf9 14 55603985 to 55610030 6045 + protein coding gene interferon regulatory factor 9
Tssr125789 14 55604173 to 55604230 57 + TSS region transcription start site region 125789
Tssr128844 14 55604423 to 55604436 13 - TSS region transcription start site region 128844
Tssr125790 14 55604497 to 55604534 37 + TSS region transcription start site region 125790
Tssr125791 14 55604550 to 55604564 14 + TSS region transcription start site region 125791
Tssr125792 14 55617997 to 55618011 14 + TSS region transcription start site region 125792
Tssr125793 14 55618023 to 55618037 14 + TSS region transcription start site region 125793
Rec8 14 55618037 to 55625395 7358 + protein coding gene REC8 meiotic recombination protein
Tssr125794 14 55618126 to 55618137 11 + TSS region transcription start site region 125794
Tssr125795 14 55618138 to 55618183 45 + TSS region transcription start site region 125795
Tssr125796 14 55619038 to 55619063 25 + TSS region transcription start site region 125796
Ipo4 14 55625629 to 55635952 10323 - protein coding gene importin 4
Tssr128845 14 55628357 to 55628373 16 - TSS region transcription start site region 128845
Gm49378 14 55629076 to 55637895 8819 - protein coding gene predicted gene, 49378