Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:54442303-54822314

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mmp14 14 54431598 to 54442456 10858 + protein coding gene matrix metallopeptidase 14 (membrane-inserted)
Tssr125649 14 54442322 to 54442338 16 + TSS region transcription start site region 125649
5430430K15Rik 14 54446318 to 54447861 1543 + unclassified gene RIKEN cDNA 5430430K15 gene
Cpgi6457 14 54449166 to 54449544 378 CpG island CpG island 6457
Gm24424 14 54449958 to 54450064 106 - snRNA gene predicted gene, 24424
Tssr128589 14 54462796 to 54462799 3 - TSS region transcription start site region 128589
Gm10366 14 54463042 to 54464742 1700 - antisense lncRNA gene predicted gene 10366
Cpgi6458 14 54463865 to 54464965 1100 CpG island CpG island 6458
Tssr125650 14 54463898 to 54463912 14 + TSS region transcription start site region 125650
Tssr4410 14 54463915 to 54463926 11 + TSS region transcription start site region 4410
Tssr4411 14 54464030 to 54464050 20 - TSS region transcription start site region 4411
Tssr128590 14 54464053 to 54464067 14 - TSS region transcription start site region 128590
Tssr128591 14 54464069 to 54464083 14 - TSS region transcription start site region 128591
Tssr125651 14 54464141 to 54464222 81 + TSS region transcription start site region 125651
Lrp10 14 54464147 to 54470292 6145 + protein coding gene low-density lipoprotein receptor-related protein 10
Tssr125652 14 54464480 to 54464515 35 + TSS region transcription start site region 125652
Tssr125653 14 54467485 to 54467519 34 + TSS region transcription start site region 125653
Tssr125654 14 54467600 to 54467611 11 + TSS region transcription start site region 125654
Tssr125655 14 54467957 to 54467977 20 + TSS region transcription start site region 125655
Tssr125656 14 54468114 to 54468127 13 + TSS region transcription start site region 125656
Tssr125657 14 54469328 to 54469351 23 + TSS region transcription start site region 125657
Rem2 14 54476100 to 54480431 4331 + protein coding gene rad and gem related GTP binding protein 2
Tssr125658 14 54476183 to 54476190 7 + TSS region transcription start site region 125658
Cpgi6459 14 54476189 to 54476484 295 CpG island CpG island 6459
Tssr125659 14 54476212 to 54476228 16 + TSS region transcription start site region 125659
Tssr4412 14 54476246 to 54476259 13 + TSS region transcription start site region 4412
Cpgi6460 14 54479221 to 54479894 673 CpG island CpG island 6460
Gm41153 14 54492313 to 54492913 600 - lncRNA gene predicted gene, 41153
Prmt5 14 54507182 to 54517470 10288 - protein coding gene protein arginine N-methyltransferase 5
Cpgi6461 14 54517170 to 54517702 532 CpG island CpG island 6461
Tssr128592 14 54517353 to 54517401 48 - TSS region transcription start site region 128592
n-TRacg6 14 54517696 to 54517768 72 + tRNA gene nuclear encoded tRNA arginine 6 (anticodon ACG)
Haus4 14 54541785 to 54554361 12576 - protein coding gene HAUS augmin-like complex, subunit 4
Tssr125660 14 54549550 to 54549598 48 + TSS region transcription start site region 125660
Tssr128593 14 54550036 to 54550040 4 - TSS region transcription start site region 128593
Cpgi6462 14 54553481 to 54554978 1497 CpG island CpG island 6462
Tssr125661 14 54554044 to 54554061 17 + TSS region transcription start site region 125661
Tssr128594 14 54554268 to 54554279 11 - TSS region transcription start site region 128594
Tssr128595 14 54554289 to 54554358 69 - TSS region transcription start site region 128595
Tssr128596 14 54554359 to 54554370 11 - TSS region transcription start site region 128596
Tssr128597 14 54554379 to 54554398 19 - TSS region transcription start site region 128597
Tssr128598 14 54554406 to 54554413 7 - TSS region transcription start site region 128598
Ajuba 14 54567472 to 54577558 10086 - protein coding gene ajuba LIM protein
Tssr128599 14 54568214 to 54568257 43 - TSS region transcription start site region 128599
Tssr128600 14 54572851 to 54572864 13 - TSS region transcription start site region 128600
Cpgi6463 14 54575365 to 54577746 2381 CpG island CpG island 6463
Tssr128601 14 54575666 to 54575708 42 - TSS region transcription start site region 128601
Tssr128602 14 54577480 to 54577498 18 - TSS region transcription start site region 128602
Tssr128603 14 54577527 to 54577539 12 - TSS region transcription start site region 128603
Tssr128604 14 54577543 to 54577558 15 - TSS region transcription start site region 128604
Tssr128605 14 54577561 to 54577577 16 - TSS region transcription start site region 128605
Tssr128606 14 54577578 to 54577612 34 - TSS region transcription start site region 128606
Gm24705 14 54581177 to 54581283 106 + snRNA gene predicted gene, 24705
4931414P19Rik 14 54583663 to 54605993 22330 - protein coding gene RIKEN cDNA 4931414P19 gene
Cpgi6464 14 54595111 to 54595430 319 CpG island CpG island 6464
Cpgi6465 14 54603125 to 54603817 692 CpG island CpG island 6465
Tssr128607 14 54603355 to 54603371 16 - TSS region transcription start site region 128607
Tssr128608 14 54603376 to 54603400 24 - TSS region transcription start site region 128608
Tssr125662 14 54603585 to 54603618 33 + TSS region transcription start site region 125662
Tssr128609 14 54605909 to 54605935 26 - TSS region transcription start site region 128609
Cpgi6466 14 54605918 to 54606328 410 CpG island CpG island 6466
Psmb5 14 54614120 to 54617995 3875 - protein coding gene proteasome (prosome, macropain) subunit, beta type 5
Mir686 14 54616677 to 54616785 108 - miRNA gene microRNA 686
Cpgi6467 14 54617423 to 54618162 739 CpG island CpG island 6467
Tssr128610 14 54617993 to 54618017 24 - TSS region transcription start site region 128610
Tssr125663 14 54625305 to 54625317 12 + TSS region transcription start site region 125663
Psmb11 14 54625310 to 54629556 4246 + protein coding gene proteasome (prosome, macropain) subunit, beta type, 11
Cdh24 14 54631992 to 54642067 10075 - protein coding gene cadherin-like 24
Cpgi6468 14 54632069 to 54632612 543 CpG island CpG island 6468
Tssr128611 14 54632284 to 54632289 5 - TSS region transcription start site region 128611
Tssr128612 14 54632303 to 54632314 11 - TSS region transcription start site region 128612
D14Dcr11 14 54634189 to 54634288 99 DNA segment DNA Segment, Chr 14, Derry C. Roopenian 11
Cpgi6469 14 54640773 to 54641912 1139 CpG island CpG island 6469
Gm17606 14 54640952 to 54648293 7341 + protein coding gene predicted gene, 17606
Tssr128613 14 54641323 to 54641343 20 - TSS region transcription start site region 128613
Tssr128614 14 54641347 to 54641374 27 - TSS region transcription start site region 128614
Acin1 14 54642161 to 54686931 44770 - protein coding gene apoptotic chromatin condensation inducer 1
Mir6948 14 54643049 to 54643110 61 - miRNA gene microRNA 6948
4930579G18Rik 14 54650511 to 54654607 4096 + antisense lncRNA gene RIKEN cDNA 4930579G18 gene
Cpgi6470 14 54653489 to 54653652 163 CpG island CpG island 6470
Tssr128615 14 54653662 to 54653701 39 - TSS region transcription start site region 128615
Tssr128616 14 54653732 to 54653743 11 - TSS region transcription start site region 128616
Tssr128617 14 54654219 to 54654222 3 - TSS region transcription start site region 128617
Gm8776 14 54681098 to 54681726 628 + pseudogene predicted gene 8776
Tssr125664 14 54681099 to 54681100 1 + TSS region transcription start site region 125664
Cpgi6471 14 54686011 to 54687060 1049 CpG island CpG island 6471
Tssr128618 14 54686132 to 54686167 35 - TSS region transcription start site region 128618
Tssr128619 14 54686169 to 54686198 29 - TSS region transcription start site region 128619
Tssr4413 14 54686170 to 54686184 14 + TSS region transcription start site region 4413
Tssr125665 14 54686201 to 54686230 29 + TSS region transcription start site region 125665
1700123O20Rik 14 54686216 to 54690741 4525 + protein coding gene RIKEN cDNA 1700123O20 gene
Tssr125666 14 54686242 to 54686261 19 + TSS region transcription start site region 125666
Tssr128620 14 54686272 to 54686283 11 - TSS region transcription start site region 128620
Tssr125667 14 54686373 to 54686398 25 + TSS region transcription start site region 125667
Tssr128621 14 54686605 to 54686647 42 - TSS region transcription start site region 128621
Tssr128622 14 54686926 to 54686970 44 - TSS region transcription start site region 128622
Tssr125668 14 54686982 to 54687063 81 + TSS region transcription start site region 125668
Gm29776 14 54692598 to 54698833 6235 - protein coding gene predicted gene, 29776
Cebpe 14 54710363 to 54712174 1811 - protein coding gene CCAAT/enhancer binding protein (C/EBP), epsilon
Cpgi6472 14 54710597 to 54710792 195 CpG island CpG island 6472
Tssr4414 14 54711903 to 54711949 46 - TSS region transcription start site region 4414
Tssr128623 14 54712120 to 54712134 14 - TSS region transcription start site region 128623
Tssr128624 14 54712139 to 54712153 14 - TSS region transcription start site region 128624
Tssr128625 14 54712330 to 54712367 37 - TSS region transcription start site region 128625
Tssr128626 14 54712397 to 54712408 11 - TSS region transcription start site region 128626
Slc7a8 14 54722215 to 54781886 59671 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 8
Tssr128627 14 54723269 to 54723281 12 - TSS region transcription start site region 128627
Tssr128628 14 54723366 to 54723391 25 - TSS region transcription start site region 128628
Tssr128629 14 54723571 to 54723578 7 - TSS region transcription start site region 128629
Tssr128630 14 54723761 to 54723782 21 - TSS region transcription start site region 128630
Tssr128631 14 54723802 to 54723821 19 - TSS region transcription start site region 128631
Tssr125669 14 54723953 to 54723965 12 + TSS region transcription start site region 125669
Tssr128632 14 54724038 to 54724049 11 - TSS region transcription start site region 128632
Tssr128633 14 54724066 to 54724086 20 - TSS region transcription start site region 128633
Tssr128634 14 54724098 to 54724109 11 - TSS region transcription start site region 128634
Tssr128635 14 54724179 to 54724191 12 - TSS region transcription start site region 128635
Tssr128636 14 54724208 to 54724217 9 - TSS region transcription start site region 128636
Tssr128637 14 54724794 to 54724808 14 - TSS region transcription start site region 128637
Tssr128638 14 54726752 to 54726802 50 - TSS region transcription start site region 128638
Tssr128639 14 54726816 to 54726827 11 - TSS region transcription start site region 128639
Tssr128640 14 54733249 to 54733263 14 - TSS region transcription start site region 128640
Tssr128641 14 54740124 to 54740129 5 - TSS region transcription start site region 128641
Tssr128642 14 54752164 to 54752212 48 - TSS region transcription start site region 128642
Tssr128643 14 54759672 to 54759683 11 - TSS region transcription start site region 128643
Tssr128644 14 54768353 to 54768395 42 - TSS region transcription start site region 128644
Tssr128645 14 54779802 to 54779815 13 - TSS region transcription start site region 128645
Cpgi6473 14 54781106 to 54782041 935 CpG island CpG island 6473
Tssr128646 14 54781906 to 54781925 19 - TSS region transcription start site region 128646
Tssr128647 14 54781934 to 54781952 18 - TSS region transcription start site region 128647
Gm17772 14 54805746 to 54806096 350 - pseudogene predicted gene, 17772
Cpgi6474 14 54814011 to 54814352 341 CpG island CpG island 6474
Rnf212b 14 54814141 to 54854108 39967 + protein coding gene ring finger protein 212B
Tssr125670 14 54814144 to 54814156 12 + TSS region transcription start site region 125670