Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:54177364-54267374

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Carg1 14 51145002 to 54224198 3079196 QTL Candida albicans resistance gene 1
Tcra 14 52427967 to 54224198 1796231 + complex/cluster/region T cell receptor alpha chain
Traj40 14 54177921 to 54177981 60 + gene segment T cell receptor alpha joining 40
Tssr125571 14 54179524 to 54179530 6 + TSS region transcription start site region 125571
Tssr125572 14 54179647 to 54179660 13 + TSS region transcription start site region 125572
Tssr125573 14 54179712 to 54179722 10 + TSS region transcription start site region 125573
Traj39 14 54179962 to 54180024 62 + gene segment T cell receptor alpha joining 39
Traj38 14 54180574 to 54180635 61 + gene segment T cell receptor alpha joining 38
Tssr128544 14 54181230 to 54181249 19 - TSS region transcription start site region 128544
Tssr125574 14 54181421 to 54181438 17 + TSS region transcription start site region 125574
Tssr125575 14 54181484 to 54181511 27 + TSS region transcription start site region 125575
Tssr125576 14 54181516 to 54181548 32 + TSS region transcription start site region 125576
Traj37 14 54181518 to 54181577 59 + gene segment T cell receptor alpha joining 37
Tssr125577 14 54181560 to 54181567 7 + TSS region transcription start site region 125577
Tssr125578 14 54181630 to 54181633 3 + TSS region transcription start site region 125578
Traj36 14 54182402 to 54182464 62 + pseudogenic gene segment T cell receptor alpha joining 36
Traj35 14 54183774 to 54183838 64 + gene segment T cell receptor alpha joining 35
Traj34 14 54184699 to 54184756 57 + gene segment T cell receptor alpha joining 34
Traj33 14 54185358 to 54185414 56 + gene segment T cell receptor alpha joining 33
Tssr125579 14 54185846 to 54185851 5 + TSS region transcription start site region 125579
Tssr125580 14 54185990 to 54186004 14 + TSS region transcription start site region 125580
Traj32 14 54186101 to 54186166 65 + gene segment T cell receptor alpha joining 32
Traj31 14 54187895 to 54187951 56 + gene segment T cell receptor alpha joining 31
Traj30 14 54189866 to 54189924 58 + gene segment T cell receptor alpha joining 30
Traj29 14 54190946 to 54191005 59 + gene segment T cell receptor alpha joining 29
Traj28 14 54191661 to 54191725 64 + gene segment T cell receptor alpha joining 28
Tssr125581 14 54192256 to 54192287 31 + TSS region transcription start site region 125581
Tssr125582 14 54192301 to 54192315 14 + TSS region transcription start site region 125582
Traj27 14 54192303 to 54192361 58 + gene segment T cell receptor alpha joining 27
Tssr128545 14 54192478 to 54192482 4 - TSS region transcription start site region 128545
Tssr125583 14 54192711 to 54192722 11 + TSS region transcription start site region 125583
D14Mit142 14 54192728 to 54192863 135 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 142
Cia50 14 54192728 to 54192863 135 QTL collagen induced arthritis QTL 50
Tssr125584 14 54192754 to 54192770 16 + TSS region transcription start site region 125584
Tssr125585 14 54193965 to 54193974 9 + TSS region transcription start site region 125585
Tssr125586 14 54194220 to 54194238 18 + TSS region transcription start site region 125586
Traj26 14 54194490 to 54194549 59 + gene segment T cell receptor alpha joining 26
Tssr125587 14 54194697 to 54194710 13 + TSS region transcription start site region 125587
Traj25 14 54194815 to 54194871 56 + gene segment T cell receptor alpha joining 25
Traj24 14 54195645 to 54195700 55 + gene segment T cell receptor alpha joining 24
Tssr125588 14 54196037 to 54196064 27 + TSS region transcription start site region 125588
Tssr125589 14 54196068 to 54196076 8 + TSS region transcription start site region 125589
Traj23 14 54196081 to 54196140 59 + gene segment T cell receptor alpha joining 23
Traj22 14 54197248 to 54197307 59 + gene segment T cell receptor alpha joining 22
Tssr128546 14 54197878 to 54197885 7 - TSS region transcription start site region 128546
Tssr128547 14 54197908 to 54197918 10 - TSS region transcription start site region 128547
Traj21 14 54198790 to 54198846 56 + gene segment T cell receptor alpha joining 21
Traj20 14 54199441 to 54199498 57 + gene segment T cell receptor alpha joining 20
Tssr125590 14 54199972 to 54199983 11 + TSS region transcription start site region 125590
Traj19 14 54200386 to 54200446 60 + gene segment T cell receptor alpha joining 19
Traj18 14 54200777 to 54200842 65 + gene segment T cell receptor alpha joining 18
Traj17 14 54201775 to 54201837 62 + gene segment T cell receptor alpha joining 17
Traj16 14 54203134 to 54203194 60 + gene segment T cell receptor alpha joining 16
Traj15 14 54204422 to 54204481 59 + gene segment T cell receptor alpha joining 15
Traj14 14 54205111 to 54205144 33 + pseudogenic gene segment T cell receptor alpha joining 14
Traj13 14 54205741 to 54205797 56 + gene segment T cell receptor alpha joining 13
Traj12 14 54206553 to 54206610 57 + gene segment T cell receptor alpha joining 12
Tssr128548 14 54206624 to 54206636 12 - TSS region transcription start site region 128548
Tssr125591 14 54207099 to 54207108 9 + TSS region transcription start site region 125591
Traj11 14 54207139 to 54207197 58 + gene segment T cell receptor alpha joining 11
Tssr125592 14 54207815 to 54207827 12 + TSS region transcription start site region 125592
Tssr125593 14 54208176 to 54208220 44 + TSS region transcription start site region 125593
Traj9 14 54209393 to 54209450 57 + gene segment T cell receptor alpha joining 9
Traj8 14 54209918 to 54209954 36 + pseudogenic gene segment T cell receptor alpha joining 8
Tssr125594 14 54211391 to 54211404 13 + TSS region transcription start site region 125594
Tssr125595 14 54211448 to 54211466 18 + TSS region transcription start site region 125595
Traj7 14 54211470 to 54211528 58 + gene segment T cell receptor alpha joining 7
Traj6 14 54212688 to 54212749 61 + gene segment T cell receptor alpha joining 6
Tssr128549 14 54213723 to 54213729 6 - TSS region transcription start site region 128549
Traj5 14 54213777 to 54213838 61 + gene segment T cell receptor alpha joining 5
Traj4 14 54216291 to 54216353 62 + gene segment T cell receptor alpha joining 4
Traj3 14 54217292 to 54217357 65 + gene segment T cell receptor alpha joining 3
Traj2 14 54217836 to 54217901 65 + gene segment T cell receptor alpha joining 2
Tssr128550 14 54218654 to 54218666 12 - TSS region transcription start site region 128550
Traj1 14 54218814 to 54218842 28 + pseudogenic gene segment T cell receptor alpha joining 1
Tssr125596 14 54218829 to 54218834 5 + TSS region transcription start site region 125596
Tssr125597 14 54218974 to 54218985 11 + TSS region transcription start site region 125597
Tssr125598 14 54219030 to 54219039 9 + TSS region transcription start site region 125598
Trac 14 54220521 to 54224198 3677 + gene segment T cell receptor alpha constant
Tssr125599 14 54220566 to 54220585 19 + TSS region transcription start site region 125599
Tssr125600 14 54220696 to 54220710 14 + TSS region transcription start site region 125600
Tssr125601 14 54222237 to 54222256 19 + TSS region transcription start site region 125601
Tssr125602 14 54222364 to 54222374 10 + TSS region transcription start site region 125602
Tssr128551 14 54222486 to 54222499 13 - TSS region transcription start site region 128551
Tssr125603 14 54222738 to 54222754 16 + TSS region transcription start site region 125603
Tssr125604 14 54222774 to 54222789 15 + TSS region transcription start site region 125604
Tssr125605 14 54222808 to 54222819 11 + TSS region transcription start site region 125605
Tssr125606 14 54222838 to 54222850 12 + TSS region transcription start site region 125606
Tssr125607 14 54223715 to 54223733 18 + TSS region transcription start site region 125607
Tssr125608 14 54223962 to 54223972 10 + TSS region transcription start site region 125608
Tssr125609 14 54224033 to 54224047 14 + TSS region transcription start site region 125609
Tssr128552 14 54225285 to 54225299 14 - TSS region transcription start site region 128552
Tssr125610 14 54225451 to 54225460 9 + TSS region transcription start site region 125610
Tssr125611 14 54225946 to 54225958 12 + TSS region transcription start site region 125611
Tssr125612 14 54226050 to 54226060 10 + TSS region transcription start site region 125612
Tssr125613 14 54226063 to 54226100 37 + TSS region transcription start site region 125613
Tssr128553 14 54227356 to 54227383 27 - TSS region transcription start site region 128553
Tssr125614 14 54227678 to 54227689 11 + TSS region transcription start site region 125614
Cpgi6449 14 54229063 to 54229316 253 CpG island CpG island 6449
Cpgi6450 14 54231249 to 54231457 208 CpG island CpG island 6450
Tssr128554 14 54231428 to 54231443 15 - TSS region transcription start site region 128554
Tssr125615 14 54232243 to 54232249 6 + TSS region transcription start site region 125615
Tssr125616 14 54232550 to 54232564 14 + TSS region transcription start site region 125616
Tssr125617 14 54232993 to 54233006 13 + TSS region transcription start site region 125617
Tssr128555 14 54233250 to 54233261 11 - TSS region transcription start site region 128555
Dad1 14 54235485 to 54253929 18444 - protein coding gene defender against cell death 1
Tssr128556 14 54236096 to 54236130 34 - TSS region transcription start site region 128556
Cpgi6451 14 54253550 to 54254240 690 CpG island CpG island 6451
Tssr125618 14 54253647 to 54253657 10 + TSS region transcription start site region 125618
Tssr4409 14 54253666 to 54253671 5 + TSS region transcription start site region 4409
Tssr128557 14 54253710 to 54253721 11 - TSS region transcription start site region 128557
Tssr128558 14 54253759 to 54253770 11 - TSS region transcription start site region 128558
Tssr128559 14 54253843 to 54253904 61 - TSS region transcription start site region 128559
Tssr128560 14 54253907 to 54253920 13 - TSS region transcription start site region 128560
Tssr125619 14 54254124 to 54254247 123 + TSS region transcription start site region 125619
Abhd4 14 54254129 to 54269169 15040 + protein coding gene abhydrolase domain containing 4
Cpgi6452 14 54259070 to 54259660 590 CpG island CpG island 6452
Tssr128561 14 54259135 to 54259158 23 - TSS region transcription start site region 128561
Tssr125620 14 54259227 to 54259241 14 + TSS region transcription start site region 125620
Tssr125621 14 54259242 to 54259300 58 + TSS region transcription start site region 125621