Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:53516105-54146827

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128 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trav6-6 14 53516929 to 53517366 437 + gene segment T cell receptor alpha variable 6-6
Trav11 14 53519303 to 53519859 556 + gene segment T cell receptor alpha variable 11
Tssr125481 14 53530746 to 53530764 18 + TSS region transcription start site region 125481
Trav7-5 14 53530786 to 53531313 527 + gene segment T cell receptor alpha variable 7-5
Tssr125482 14 53538246 to 53538258 12 + TSS region transcription start site region 125482
Trav12-1 14 53538266 to 53538738 472 + gene segment T cell receptor alpha variable 12-1
Tssr125483 14 53544882 to 53544917 35 + TSS region transcription start site region 125483
Tssr125484 14 53544975 to 53544990 15 + TSS region transcription start site region 125484
Trav13-1 14 53545014 to 53545525 511 + gene segment T cell receptor alpha variable 13-1
Tssr125485 14 53553987 to 53554003 16 + TSS region transcription start site region 125485
Tssr125486 14 53554043 to 53554046 3 + TSS region transcription start site region 125486
Trav14-1 14 53554057 to 53554558 501 + gene segment T cell receptor alpha variable 14-1
Trav15-1-dv6-1 14 53559676 to 53560247 571 + gene segment T cell receptor alpha variable 15-1-DV6-1
Trav3-2 14 53586500 to 53586964 464 + pseudogenic gene segment T cell receptor alpha variable 3-2
Tssr125487 14 53590901 to 53590908 7 + TSS region transcription start site region 125487
Trav9-2 14 53591080 to 53591504 424 + gene segment T cell receptor alpha variable 9-2
Tssr125488 14 53598825 to 53598855 30 + TSS region transcription start site region 125488
Trav4-3 14 53598911 to 53599410 499 + gene segment T cell receptor alpha variable 4-3
Trav5-2 14 53614945 to 53615224 279 + pseudogenic gene segment T cell receptor alpha variable 5-2
Trav12-2 14 53616397 to 53616914 517 + gene segment T cell receptor alpha variable 12-2
D14Mit19 14 53616494 to 53616643 149 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 19
Tssr125489 14 53621732 to 53621744 12 + TSS region transcription start site region 125489
Trav12-3 14 53621752 to 53622245 493 + gene segment T cell receptor alpha variable 12-3
Tssr125490 14 53634821 to 53634831 10 + TSS region transcription start site region 125490
Trav13-2 14 53634888 to 53635399 511 + gene segment T cell receptor alpha variable 13-2
Trav14-2 14 53640775 to 53641225 450 + gene segment T cell receptor alpha variable 14-2
Tssr125491 14 53644181 to 53644186 5 + TSS region transcription start site region 125491
Trav15-2-dv6-2 14 53649425 to 53649994 569 + gene segment T cell receptor alpha variable 15-2-DV6-2
Gm17792 14 53662785 to 53663829 1044 + pseudogene predicted gene, 17792
Gm43551 14 53663341 to 53663780 439 - pseudogene predicted gene 43551
Tssr125492 14 53665912 to 53665946 34 + TSS region transcription start site region 125492
Trav3-3 14 53666005 to 53666506 501 + gene segment T cell receptor alpha variable 3-3
Trav9-4 14 53676196 to 53676628 432 + gene segment T cell receptor alpha variable 9-4
Tssr125493 14 53683593 to 53683600 7 + TSS region transcription start site region 125493
Trav4-4-dv10 14 53683677 to 53684177 500 + gene segment T cell receptor alpha variable 4-4-DV10
Gm43550 14 53694573 to 53694875 302 - pseudogene predicted gene 43550
Trav5-4 14 53704007 to 53704514 507 + gene segment T cell receptor alpha variable 5-4
Trav6-7-dv9 14 53709943 to 53710419 476 + gene segment T cell receptor alpha variable 6-7-DV9
Tssr125494 14 53716680 to 53716706 26 + TSS region transcription start site region 125494
Trav7-6 14 53716760 to 53717291 531 + gene segment T cell receptor alpha variable 7-6
Trav13-3 14 53729558 to 53730074 516 + pseudogenic gene segment T cell receptor alpha variable 13-3
Tssr125495 14 53738303 to 53738307 4 + TSS region transcription start site region 125495
Trav8-2 14 53738375 to 53738838 463 + pseudogenic gene segment T-cell receptor alpha variable 8-2
Trav16 14 53743174 to 53743705 531 + gene segment T cell receptor alpha variable 16
Trav13-4-dv7 14 53757410 to 53757921 511 + gene segment T cell receptor alpha variable 13-4-DV7
Tssr125496 14 53763137 to 53763185 48 + TSS region transcription start site region 125496
Trav14-3 14 53763196 to 53763694 498 + gene segment T cell receptor alpha variable 14-3
Trav15-3 14 53767026 to 53767180 154 + pseudogenic gene segment T cell receptor alpha variable 15-3
Tssr125497 14 53776930 to 53776957 27 + TSS region transcription start site region 125497
Trav3-4 14 53777071 to 53777576 505 + gene segment T cell receptor alpha variable 3-4
Trav12-4 14 53778603 to 53778845 242 + pseudogenic gene segment T cell receptor alpha variable 12-4
B230359F08Rik 14 53795455 to 53795963 508 + protein coding gene RIKEN cDNA B230359F08 gene
Tssr125498 14 53800705 to 53800713 8 + TSS region transcription start site region 125498
Tssr125499 14 53800797 to 53800813 16 + TSS region transcription start site region 125499
Tssr125500 14 53800815 to 53800834 19 + TSS region transcription start site region 125500
Tssr125501 14 53806463 to 53806472 9 + TSS region transcription start site region 125501
Tssr125502 14 53806497 to 53806520 23 + TSS region transcription start site region 125502
Trav17 14 53806639 to 53807115 476 + gene segment T cell receptor alpha variable 17
Trav18 14 53831105 to 53831827 722 + gene segment T cell receptor alpha variable 18
Tssr125503 14 53845263 to 53845276 13 + TSS region transcription start site region 125503
Tssr125504 14 53845307 to 53845321 14 + TSS region transcription start site region 125504
Trav19 14 53845322 to 53845827 505 + gene segment T cell receptor alpha variable 19
Tssr128529 14 53845830 to 53845844 14 - TSS region transcription start site region 128529
Tssr125505 14 53863057 to 53863088 31 + TSS region transcription start site region 125505
Trav20 14 53863110 to 53863661 551 + pseudogenic gene segment T cell receptor alpha variable 20
Tssr128530 14 53863317 to 53863320 3 - TSS region transcription start site region 128530
Tssr125506 14 53875939 to 53875946 7 + TSS region transcription start site region 125506
Tssr125507 14 53875959 to 53875989 30 + TSS region transcription start site region 125507
Tssr125508 14 53875992 to 53876005 13 + TSS region transcription start site region 125508
Trav21-dv12 14 53876016 to 53876752 736 + gene segment T cell receptor alpha variable 21-DV12
Tssr125509 14 53876688 to 53876713 25 + TSS region transcription start site region 125509
Tssr125510 14 53881532 to 53881545 13 + TSS region transcription start site region 125510
Tssr125511 14 53881557 to 53881579 22 + TSS region transcription start site region 125511
Tssr125512 14 53881586 to 53881605 19 + TSS region transcription start site region 125512
Trdv1 14 53881612 to 53882217 605 + gene segment T cell receptor delta variable 1
Gm30392 14 53893586 to 53995588 102002 - lncRNA gene predicted gene, 30392
Tssr125513 14 53902983 to 53902986 3 + TSS region transcription start site region 125513
Gm43647 14 53918327 to 53961515 43188 - antisense lncRNA gene predicted gene 43647
Trav22 14 53926978 to 53927595 617 + pseudogenic gene segment T cell receptor alpha variable 22
Tssr125514 14 53945992 to 53945998 6 + TSS region transcription start site region 125514
Tssr125515 14 53946009 to 53946022 13 + TSS region transcription start site region 125515
Trdv2-1 14 53946073 to 53946660 587 + gene segment T cell receptor delta variable 2-1
Tcrd 14 53946073 to 54159198 213125 + complex/cluster/region T cell receptor delta chain
Gm30333 14 53946675 to 53961515 14840 - lncRNA gene predicted gene, 30333
Tssr125516 14 53960912 to 53960925 13 + TSS region transcription start site region 125516
Tssr125517 14 53960932 to 53960949 17 + TSS region transcription start site region 125517
Tssr125518 14 53960954 to 53960981 27 + TSS region transcription start site region 125518
Tssr125519 14 53960984 to 53960996 12 + TSS region transcription start site region 125519
Trdv2-2 14 53960993 to 53961602 609 + gene segment T cell receptor delta variable 2-2
Tssr128531 14 53961594 to 53961634 40 - TSS region transcription start site region 128531
Trav23 14 53977153 to 53977678 525 + pseudogenic gene segment T cell receptor alpha variable 23
Trdv3 14 54000948 to 54001253 305 + pseudogenic gene segment T cell receptor delta variable 3
Tssr125520 14 54059279 to 54059290 11 + TSS region transcription start site region 125520
Gm30275 14 54067579 to 54125395 57816 - antisense lncRNA gene predicted gene, 30275
Tssr125521 14 54074898 to 54074945 47 + TSS region transcription start site region 125521
Tssr125522 14 54074967 to 54074981 14 + TSS region transcription start site region 125522
Tssr125523 14 54074987 to 54074999 12 + TSS region transcription start site region 125523
Trdv4 14 54075004 to 54075515 511 + gene segment T cell receptor delta variable 4
Tssr125524 14 54075017 to 54075024 7 + TSS region transcription start site region 125524
Tssr128532 14 54075621 to 54075636 15 - TSS region transcription start site region 128532
Tssr125525 14 54075732 to 54075746 14 + TSS region transcription start site region 125525
D14Mit259 14 54109825 to 54109949 124 DNA segment DNA Segment, Chr 14 Massachusetts Institute of Technology 259
Tssr125526 14 54113327 to 54113338 11 + TSS region transcription start site region 125526
Tssr125527 14 54113435 to 54113446 11 + TSS region transcription start site region 125527
Trdd1 14 54113468 to 54113476 8 + gene segment T cell receptor delta diversity 1
Gm23704 14 54117054 to 54117393 339 + unclassified non-coding RNA gene predicted gene, 23704
Tssr125528 14 54120370 to 54120393 23 + TSS region transcription start site region 125528
Tssr125529 14 54121470 to 54121491 21 + TSS region transcription start site region 125529
Tssr125530 14 54121875 to 54121904 29 + TSS region transcription start site region 125530
Tssr125531 14 54121907 to 54121923 16 + TSS region transcription start site region 125531
Tssr125532 14 54121925 to 54121936 11 + TSS region transcription start site region 125532
Tssr125533 14 54122037 to 54122040 3 + TSS region transcription start site region 125533
Tssr125534 14 54122113 to 54122133 20 + TSS region transcription start site region 125534
Tssr125535 14 54122142 to 54122147 5 + TSS region transcription start site region 125535
Tssr125536 14 54122161 to 54122184 23 + TSS region transcription start site region 125536
Tssr125537 14 54122190 to 54122228 38 + TSS region transcription start site region 125537
Trdd2 14 54122226 to 54122241 15 + gene segment T cell receptor delta diversity 2
Tssr125538 14 54122230 to 54122248 18 + TSS region transcription start site region 125538
Tssr125539 14 54123123 to 54123159 36 + TSS region transcription start site region 125539
Trdj1 14 54123138 to 54123188 50 + gene segment T cell receptor delta joining 1
Tssr128533 14 54123584 to 54123630 46 - TSS region transcription start site region 128533
Tssr128534 14 54125413 to 54125425 12 - TSS region transcription start site region 128534
Gm43434 14 54128298 to 54146287 17989 - antisense lncRNA gene predicted gene 43434
Tssr125540 14 54136740 to 54136750 10 + TSS region transcription start site region 125540
Trdj2 14 54136779 to 54136837 58 + gene segment T cell receptor delta joining 2
Tssr128535 14 54138261 to 54138286 25 - TSS region transcription start site region 128535
Tssr125541 14 54138492 to 54138537 45 + TSS region transcription start site region 125541
Trdc 14 54142851 to 54146108 3257 + gene segment T cell receptor delta, constant region