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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:53119882-53969917

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcra-V2 14 53077312 to 53369494 292182 gene segment T cell receptor alpha, variable 2
Trav10n 14 53122114 to 53122610 496 + gene segment T cell receptor alpha variable 10N
Trav6n-6 14 53132700 to 53133137 437 + gene segment T cell receptor alpha variable 6N-6
Trav11n 14 53135122 to 53135678 556 + pseudogenic gene segment T cell receptor alpha variable 11N
Trav7n-5 14 53146922 to 53147448 526 + gene segment T cell receptor alpha variable 7N-5
Trav12n-1 14 53155607 to 53156088 481 + gene segment T cell receptor alpha variable 12N-1
Trav13n-1 14 53162399 to 53162910 511 + gene segment T cell receptor alpha variable 13N-1
Trav14n-1 14 53166677 to 53167178 501 + gene segment T cell receptor alpha variable 14N-1
Gm6755 14 53172727 to 53173590 863 - pseudogene predicted gene 6755
Trav15n-1 14 53174325 to 53174896 571 + gene segment T cell receptor alpha variable 15N-1
Trav3n-2 14 53198525 to 53199018 493 + gene segment T cell receptor alpha variable 3N-2
Trav9n-2 14 53203122 to 53203544 422 + gene segment T cell receptor alpha variable 9N-2
Trav4n-3 14 53210906 to 53211407 501 + gene segment T cell receptor alpha variable 4N-3
Rps19-ps1 14 53213730 to 53214167 437 + pseudogene ribosomal protein S19, pseudogene 1
Trav5n-2 14 53225402 to 53225676 274 + pseudogenic gene segment T cell receptor alpha variable 5N-2
Trav12n-2 14 53226884 to 53227400 516 + gene segment T cell receptor alpha variable 12N-2
Trav9n-3 14 53231668 to 53232102 434 + gene segment T cell receptor alpha variable 9N-3
Trav5n-3 14 53239284 to 53239553 269 + pseudogenic gene segment T cell receptor alpha variable 5N-3
Trav12n-3 14 53240751 to 53241244 493 + gene segment T cell receptor alpha variable 12N-3
Trav13n-2 14 53253792 to 53254317 525 + gene segment T cell receptor alpha variable 13N-2
Trav14n-2 14 53259678 to 53260179 501 + gene segment T cell receptor alpha variable 14N-2
Trav15n-2 14 53267963 to 53268535 572 + gene segment T cell receptor alpha variable 15N-2
Gm3922 14 53281075 to 53281509 434 - pseudogene predicted gene 3922
Trav3n-3 14 53283669 to 53284175 506 + gene segment T cell receptor alpha variable 3N-3
Trav9n-4 14 53294596 to 53295030 434 + gene segment T cell receptor alpha variable 9N-4
Trav4n-4 14 53302059 to 53302559 500 + gene segment T cell receptor alpha variable 4N-4
Trav5n-4 14 53312904 to 53313422 518 + gene segment T cell receptor alpha variable 5N-4
Trav6n-7 14 53318818 to 53319284 466 + gene segment T cell receptor alpha variable 6N-7
Trav7n-6 14 53324676 to 53325208 532 + gene segment T cell receptor alpha variable 7N-6
Gm43650 14 53336637 to 53343922 7285 - antisense lncRNA gene predicted gene 43650
Trav13n-3 14 53337122 to 53337639 517 + gene segment T cell receptor alpha variable 13N-3
Tssr125476 14 53345889 to 53345893 4 + TSS region transcription start site region 125476
Trav8n-2 14 53345961 to 53346424 463 + gene segment T cell receptor alpha variable 8n-2
Trav16n 14 53351090 to 53351621 531 + gene segment T cell receptor alpha variable 16n
Trav13n-4 14 53362368 to 53364106 1738 + gene segment T cell receptor alpha variable 13N-4
D14Mit21 14 53368766 to 53369012 246 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 21
Tssr125477 14 53370013 to 53370025 12 + TSS region transcription start site region 125477
Trav14n-3 14 53370077 to 53370575 498 + gene segment T cell receptor alpha variable 14N-3
Trav15n-3 14 53375112 to 53375279 167 + pseudogenic gene segment T cell receptor alpha variable 15N-3
Trav7-2 14 53390633 to 53391136 503 + gene segment T cell receptor alpha variable 7-2
Tssr125478 14 53418352 to 53418393 41 + TSS region transcription start site region 125478
Trav4-2 14 53418388 to 53418873 485 + gene segment T cell receptor alpha variable 4-2
Tssr125479 14 53428708 to 53428721 13 + TSS region transcription start site region 125479
Trav6-3 14 53428761 to 53430377 1616 + gene segment T cell receptor alpha variable 6-3
Tssr125480 14 53443243 to 53443262 19 + TSS region transcription start site region 125480
Trav7-3 14 53443314 to 53443839 525 + gene segment T cell receptor alpha variable 7-3
Trav6-4 14 53454327 to 53454784 457 + gene segment T cell receptor alpha variable 6-4
Trav7-4 14 53461209 to 53461738 529 + gene segment T cell receptor alpha variable 7-4
Gm18711 14 53466079 to 53466828 749 + pseudogene predicted gene, 18711
Trav8-1 14 53469756 to 53470231 475 + gene segment T cell receptor alpha variable 8-1
Trav9-1 14 53488106 to 53488567 461 + gene segment T cell receptor alpha variable 9-1
Trav6-5 14 53491152 to 53491622 470 + gene segment T cell receptor alpha variable 6-5
Trav10 14 53505790 to 53506286 496 + gene segment T cell receptor alpha variable 10
Trav6-6 14 53516929 to 53517366 437 + gene segment T cell receptor alpha variable 6-6
Trav11 14 53519303 to 53519859 556 + gene segment T cell receptor alpha variable 11
Tssr125481 14 53530746 to 53530764 18 + TSS region transcription start site region 125481
Trav7-5 14 53530786 to 53531313 527 + gene segment T cell receptor alpha variable 7-5
Tssr125482 14 53538246 to 53538258 12 + TSS region transcription start site region 125482
Trav12-1 14 53538266 to 53538738 472 + gene segment T cell receptor alpha variable 12-1
Tssr125483 14 53544882 to 53544917 35 + TSS region transcription start site region 125483
Tssr125484 14 53544975 to 53544990 15 + TSS region transcription start site region 125484
Trav13-1 14 53545014 to 53545525 511 + gene segment T cell receptor alpha variable 13-1
Tssr125485 14 53553987 to 53554003 16 + TSS region transcription start site region 125485
Tssr125486 14 53554043 to 53554046 3 + TSS region transcription start site region 125486
Trav14-1 14 53554057 to 53554558 501 + gene segment T cell receptor alpha variable 14-1
Trav15-1-dv6-1 14 53559676 to 53560247 571 + gene segment T cell receptor alpha variable 15-1-DV6-1
Trav3-2 14 53586500 to 53586964 464 + pseudogenic gene segment T cell receptor alpha variable 3-2
Tssr125487 14 53590901 to 53590908 7 + TSS region transcription start site region 125487
Trav9-2 14 53591080 to 53591504 424 + gene segment T cell receptor alpha variable 9-2
Tssr125488 14 53598825 to 53598855 30 + TSS region transcription start site region 125488
Trav4-3 14 53598911 to 53599410 499 + gene segment T cell receptor alpha variable 4-3
Trav5-2 14 53614945 to 53615224 279 + pseudogenic gene segment T cell receptor alpha variable 5-2
Trav12-2 14 53616397 to 53616914 517 + gene segment T cell receptor alpha variable 12-2
D14Mit19 14 53616494 to 53616643 149 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 19
Tssr125489 14 53621732 to 53621744 12 + TSS region transcription start site region 125489
Trav12-3 14 53621752 to 53622245 493 + gene segment T cell receptor alpha variable 12-3
Tssr125490 14 53634821 to 53634831 10 + TSS region transcription start site region 125490
Trav13-2 14 53634888 to 53635399 511 + gene segment T cell receptor alpha variable 13-2
Trav14-2 14 53640775 to 53641225 450 + gene segment T cell receptor alpha variable 14-2
Tssr125491 14 53644181 to 53644186 5 + TSS region transcription start site region 125491
Trav15-2-dv6-2 14 53649425 to 53649994 569 + gene segment T cell receptor alpha variable 15-2-DV6-2
Gm17792 14 53662785 to 53663829 1044 + pseudogene predicted gene, 17792
Gm43551 14 53663341 to 53663780 439 - pseudogene predicted gene 43551
Tssr125492 14 53665912 to 53665946 34 + TSS region transcription start site region 125492
Trav3-3 14 53666005 to 53666506 501 + gene segment T cell receptor alpha variable 3-3
Trav9-4 14 53676196 to 53676628 432 + gene segment T cell receptor alpha variable 9-4
Tssr125493 14 53683593 to 53683600 7 + TSS region transcription start site region 125493
Trav4-4-dv10 14 53683677 to 53684177 500 + gene segment T cell receptor alpha variable 4-4-DV10
Gm43550 14 53694573 to 53694875 302 - pseudogene predicted gene 43550
Trav5-4 14 53704007 to 53704514 507 + gene segment T cell receptor alpha variable 5-4
Trav6-7-dv9 14 53709943 to 53710419 476 + gene segment T cell receptor alpha variable 6-7-DV9
Tssr125494 14 53716680 to 53716706 26 + TSS region transcription start site region 125494
Trav7-6 14 53716760 to 53717291 531 + gene segment T cell receptor alpha variable 7-6
Trav13-3 14 53729558 to 53730074 516 + pseudogenic gene segment T cell receptor alpha variable 13-3
Tssr125495 14 53738303 to 53738307 4 + TSS region transcription start site region 125495
Trav8-2 14 53738375 to 53738838 463 + pseudogenic gene segment T-cell receptor alpha variable 8-2
Trav16 14 53743174 to 53743705 531 + gene segment T cell receptor alpha variable 16
Trav13-4-dv7 14 53757410 to 53757921 511 + gene segment T cell receptor alpha variable 13-4-DV7
Tssr125496 14 53763137 to 53763185 48 + TSS region transcription start site region 125496
Trav14-3 14 53763196 to 53763694 498 + gene segment T cell receptor alpha variable 14-3
Trav15-3 14 53767026 to 53767180 154 + pseudogenic gene segment T cell receptor alpha variable 15-3
Tssr125497 14 53776930 to 53776957 27 + TSS region transcription start site region 125497
Trav3-4 14 53777071 to 53777576 505 + gene segment T cell receptor alpha variable 3-4
Trav12-4 14 53778603 to 53778845 242 + pseudogenic gene segment T cell receptor alpha variable 12-4
B230359F08Rik 14 53795455 to 53795963 508 + protein coding gene RIKEN cDNA B230359F08 gene
Tssr125498 14 53800705 to 53800713 8 + TSS region transcription start site region 125498
Tssr125499 14 53800797 to 53800813 16 + TSS region transcription start site region 125499
Tssr125500 14 53800815 to 53800834 19 + TSS region transcription start site region 125500
Tssr125501 14 53806463 to 53806472 9 + TSS region transcription start site region 125501
Tssr125502 14 53806497 to 53806520 23 + TSS region transcription start site region 125502
Trav17 14 53806639 to 53807115 476 + gene segment T cell receptor alpha variable 17
Trav18 14 53831105 to 53831827 722 + gene segment T cell receptor alpha variable 18
Tssr125503 14 53845263 to 53845276 13 + TSS region transcription start site region 125503
Tssr125504 14 53845307 to 53845321 14 + TSS region transcription start site region 125504
Trav19 14 53845322 to 53845827 505 + gene segment T cell receptor alpha variable 19
Tssr128529 14 53845830 to 53845844 14 - TSS region transcription start site region 128529
Tssr125505 14 53863057 to 53863088 31 + TSS region transcription start site region 125505
Trav20 14 53863110 to 53863661 551 + pseudogenic gene segment T cell receptor alpha variable 20
Tssr128530 14 53863317 to 53863320 3 - TSS region transcription start site region 128530
Tssr125506 14 53875939 to 53875946 7 + TSS region transcription start site region 125506
Tssr125507 14 53875959 to 53875989 30 + TSS region transcription start site region 125507
Tssr125508 14 53875992 to 53876005 13 + TSS region transcription start site region 125508
Trav21-dv12 14 53876016 to 53876752 736 + gene segment T cell receptor alpha variable 21-DV12
Tssr125509 14 53876688 to 53876713 25 + TSS region transcription start site region 125509
Tssr125510 14 53881532 to 53881545 13 + TSS region transcription start site region 125510
Tssr125511 14 53881557 to 53881579 22 + TSS region transcription start site region 125511
Tssr125512 14 53881586 to 53881605 19 + TSS region transcription start site region 125512
Trdv1 14 53881612 to 53882217 605 + gene segment T cell receptor delta variable 1
Gm30392 14 53893586 to 53995588 102002 - lncRNA gene predicted gene, 30392
Tssr125513 14 53902983 to 53902986 3 + TSS region transcription start site region 125513
Gm43647 14 53918327 to 53961515 43188 - antisense lncRNA gene predicted gene 43647
Trav22 14 53926978 to 53927595 617 + pseudogenic gene segment T cell receptor alpha variable 22
Tssr125514 14 53945992 to 53945998 6 + TSS region transcription start site region 125514
Tssr125515 14 53946009 to 53946022 13 + TSS region transcription start site region 125515
Trdv2-1 14 53946073 to 53946660 587 + gene segment T cell receptor delta variable 2-1
Tcrd 14 53946073 to 54159198 213125 + complex/cluster/region T cell receptor delta chain
Gm30333 14 53946675 to 53961515 14840 - lncRNA gene predicted gene, 30333
Tssr125516 14 53960912 to 53960925 13 + TSS region transcription start site region 125516
Tssr125517 14 53960932 to 53960949 17 + TSS region transcription start site region 125517
Tssr125518 14 53960954 to 53960981 27 + TSS region transcription start site region 125518
Tssr125519 14 53960984 to 53960996 12 + TSS region transcription start site region 125519
Trdv2-2 14 53960993 to 53961602 609 + gene segment T cell receptor delta variable 2-2
Tssr128531 14 53961594 to 53961634 40 - TSS region transcription start site region 128531