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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:25671516-26506127

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr124644 14 25674866 to 25674876 10 + TSS region transcription start site region 124644
Tssr127767 14 25687762 to 25687773 11 - TSS region transcription start site region 127767
Cpgi6243 14 25693646 to 25694810 1164 CpG island CpG island 6243
Tssr124645 14 25694147 to 25694166 19 + TSS region transcription start site region 124645
Ppif 14 25694154 to 25700468 6314 + protein coding gene peptidylprolyl isomerase F (cyclophilin F)
Tssr124646 14 25694170 to 25694233 63 + TSS region transcription start site region 124646
Ppifos 14 25696974 to 25701282 4308 - antisense lncRNA gene peptidylprolyl isomerase F, opposite strand
1700054O19Rik 14 25706406 to 25707273 867 - unclassified gene RIKEN cDNA 1700054O19 gene
Tssr124647 14 25707364 to 25707399 35 + TSS region transcription start site region 124647
Zcchc24 14 25711640 to 25768856 57216 - protein coding gene zinc finger, CCHC domain containing 24
Tssr124648 14 25751343 to 25751382 39 + TSS region transcription start site region 124648
Tssr124649 14 25751412 to 25751424 12 + TSS region transcription start site region 124649
Cpgi6244 14 25768276 to 25769544 1268 CpG island CpG island 6244
Tssr127768 14 25768792 to 25768802 10 - TSS region transcription start site region 127768
Tssr127769 14 25768810 to 25768865 55 - TSS region transcription start site region 127769
Tssr127770 14 25769033 to 25769083 50 - TSS region transcription start site region 127770
Gm27185 14 25809635 to 25809881 246 - pseudogene predicted gene 27185
Gm23701 14 25827996 to 25828105 109 - miRNA gene predicted gene, 23701
Tssr124650 14 25840149 to 25840166 17 + TSS region transcription start site region 124650
Tssr124651 14 25841873 to 25841882 9 + TSS region transcription start site region 124651
Cpgi6245 14 25841978 to 25842792 814 CpG island CpG island 6245
Tssr124652 14 25842128 to 25842139 11 + TSS region transcription start site region 124652
Tssr124653 14 25842146 to 25842170 24 + TSS region transcription start site region 124653
Anxa11 14 25842156 to 25886804 44648 + protein coding gene annexin A11
Tssr124654 14 25842174 to 25842193 19 + TSS region transcription start site region 124654
Tssr124655 14 25842201 to 25842222 21 + TSS region transcription start site region 124655
Tssr124656 14 25842223 to 25842234 11 + TSS region transcription start site region 124656
Tssr124657 14 25842238 to 25842249 11 + TSS region transcription start site region 124657
Tssr124658 14 25842583 to 25842626 43 + TSS region transcription start site region 124658
Tssr127771 14 25848337 to 25848348 11 - TSS region transcription start site region 127771
Tssr127772 14 25850546 to 25850593 47 - TSS region transcription start site region 127772
Tssr124659 14 25850663 to 25850671 8 + TSS region transcription start site region 124659
Tssr124660 14 25854333 to 25854364 31 + TSS region transcription start site region 124660
Tssr127773 14 25855314 to 25855333 19 - TSS region transcription start site region 127773
Tssr124661 14 25855593 to 25855602 9 + TSS region transcription start site region 124661
Tssr124662 14 25855603 to 25855606 3 + TSS region transcription start site region 124662
Tssr124663 14 25855607 to 25855638 31 + TSS region transcription start site region 124663
Tssr124664 14 25855730 to 25855741 11 + TSS region transcription start site region 124664
Tssr124665 14 25855779 to 25855788 9 + TSS region transcription start site region 124665
D14Mit111 14 25856162 to 25856310 148 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 111
D14Mit111.3 14 25856298 to 25856475 177 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 111.3
Anxa11os 14 25856777 to 25870266 13489 - antisense lncRNA gene annexin A11, opposite strand
Tssr127774 14 25856953 to 25856991 38 - TSS region transcription start site region 127774
Tssr127775 14 25857205 to 25857236 31 - TSS region transcription start site region 127775
Tssr4345 14 25857371 to 25857381 10 - TSS region transcription start site region 4345
Tssr124666 14 25857563 to 25857567 4 + TSS region transcription start site region 124666
Tssr124667 14 25857581 to 25857586 5 + TSS region transcription start site region 124667
Tssr124668 14 25857609 to 25857618 9 + TSS region transcription start site region 124668
Tssr124669 14 25857633 to 25857635 2 + TSS region transcription start site region 124669
Tssr127776 14 25858159 to 25858166 7 - TSS region transcription start site region 127776
Tssr127777 14 25861872 to 25861890 18 - TSS region transcription start site region 127777
Tssr124670 14 25862069 to 25862074 5 + TSS region transcription start site region 124670
Tssr124671 14 25868784 to 25868809 25 + TSS region transcription start site region 124671
Tssr124672 14 25868827 to 25868856 29 + TSS region transcription start site region 124672
Tssr124673 14 25869610 to 25869621 11 + TSS region transcription start site region 124673
Tssr124674 14 25869622 to 25869629 7 + TSS region transcription start site region 124674
Tssr124675 14 25869635 to 25869636 1 + TSS region transcription start site region 124675
Tssr4346 14 25869642 to 25869647 5 + TSS region transcription start site region 4346
Tssr124676 14 25872857 to 25872870 13 + TSS region transcription start site region 124676
Plac9a 14 25888403 to 25902893 14490 - protein coding gene placenta specific 9a
Tmem254a 14 25923300 to 25927672 4372 - protein coding gene transmembrane protein 254a
Gm19013 14 25939359 to 25940580 1221 - pseudogene predicted gene, 19013
Cphx1 14 25941559 to 25956374 14815 + protein coding gene cytoplasmic polyadenylated homeobox 1
Duxbl1 14 25978577 to 25990088 11511 + protein coding gene double homeobox B-like 1
Gm2260 14 26016431 to 26025837 9406 + pseudogene predicted gene 2260
Gm9780 14 26027782 to 26042963 15181 - protein coding gene predicted gene 9780
Tmem254c 14 26063919 to 26067355 3436 - protein coding gene transmembrane protein 254c
Gm19014 14 26079108 to 26080296 1188 - pseudogene predicted gene, 19014
Cphx2 14 26081516 to 26096127 14611 + protein coding gene cytoplasmic polyadenylated homeobox 2
Duxbl2 14 26118349 to 26129763 11414 + protein coding gene double homeobox B-like 2
Gm2274 14 26156036 to 26163648 7612 + pseudogene predicted gene 2274
Plac9b 14 26167316 to 26182351 15035 - protein coding gene placenta specific 9b
Tmem254b 14 26203366 to 26207025 3659 - protein coding gene transmembrane protein 254b
Gm19015 14 26218722 to 26219910 1188 - pseudogene predicted gene, 19015
Cphx3 14 26220923 to 26235744 14821 + protein coding gene cytoplasmic polyadenylated homeobox 3
Duxbl3 14 26257962 to 26269436 11474 + protein coding gene double homeobox B-like 3
Gm18578 14 26302794 to 26304924 2130 + pseudogene predicted gene, 18578
Gm46445 14 26312495 to 26337327 24832 + lncRNA gene predicted gene, 46445
Gm34059 14 26315188 to 26324676 9488 - lincRNA gene predicted gene, 34059
Tssr124677 14 26331068 to 26331072 4 + TSS region transcription start site region 124677
Tssr124678 14 26357507 to 26357529 22 + TSS region transcription start site region 124678
Tssr124679 14 26357533 to 26357551 18 + TSS region transcription start site region 124679
4933413J09Rik 14 26357547 to 26400456 42909 + lincRNA gene RIKEN cDNA 4933413J09 gene
Crb1-ps 14 26375278 to 26376172 894 - pseudogene crumbs family member 1, photoreceptor morphogenesis associated, pseudogene
Slmapos2 14 26389199 to 26395521 6322 + lincRNA gene sarcolemma associated protein, opposite strand transcript 2
Gm34223 14 26398256 to 26404157 5901 - lncRNA gene predicted gene, 34223
C130057D09Rik 14 26407972 to 26409080 1108 unclassified gene RIKEN cDNA C130057D09 gene
Slmap 14 26413168 to 26534931 121763 - protein coding gene sarcolemma associated protein
Tssr127778 14 26414628 to 26414667 39 - TSS region transcription start site region 127778
Tssr127779 14 26439215 to 26439236 21 - TSS region transcription start site region 127779
Tssr127780 14 26439255 to 26439269 14 - TSS region transcription start site region 127780
Tssr127781 14 26442622 to 26442691 69 - TSS region transcription start site region 127781
Tssr127782 14 26442692 to 26442701 9 - TSS region transcription start site region 127782
Tssr127783 14 26442723 to 26442734 11 - TSS region transcription start site region 127783
Tssr4347 14 26442760 to 26442764 4 - TSS region transcription start site region 4347
Tssr127784 14 26442843 to 26442852 9 - TSS region transcription start site region 127784
Tssr127785 14 26442874 to 26442877 3 - TSS region transcription start site region 127785
Tssr127786 14 26463612 to 26463629 17 - TSS region transcription start site region 127786
Gm24031 14 26497655 to 26497785 130 + snoRNA gene predicted gene, 24031