Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 14:24209414-25613440

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dlg5 14 24133953 to 24245920 111967 - protein coding gene discs large MAGUK scaffold protein 5
Tssr124587 14 24216265 to 24216268 3 + TSS region transcription start site region 124587
Gm17105 14 24238172 to 24243391 5219 - sense intronic lncRNA gene predicted gene 17105
Cpgi6234 14 24244647 to 24246093 1446 CpG island CpG island 6234
Tssr127743 14 24245654 to 24245693 39 - TSS region transcription start site region 127743
Tssr127744 14 24245913 to 24245925 12 - TSS region transcription start site region 127744
Gm19034 14 24284926 to 24286273 1347 + pseudogene predicted gene, 19034
E330034G19Rik 14 24293214 to 24309966 16752 + protein coding gene RIKEN cDNA E330034G19 gene
Tssr124588 14 24293452 to 24293463 11 + TSS region transcription start site region 124588
Cpgi6235 14 24358342 to 24358515 173 CpG island CpG island 6235
Gm18276 14 24358359 to 24358951 592 + pseudogene predicted gene, 18276
Tssr127745 14 24369420 to 24369425 5 - TSS region transcription start site region 127745
Tssr127746 14 24369781 to 24369793 12 - TSS region transcription start site region 127746
Tssr127747 14 24369801 to 24369808 7 - TSS region transcription start site region 127747
Tssr127748 14 24369813 to 24369819 6 - TSS region transcription start site region 127748
Gm47774 14 24375653 to 24377252 1599 - lincRNA gene predicted gene, 47774
Gm41108 14 24390017 to 24391714 1697 + lncRNA gene predicted gene, 41108
Gm41109 14 24425164 to 24429822 4658 - lncRNA gene predicted gene, 41109
Tssr127749 14 24429816 to 24429830 14 - TSS region transcription start site region 127749
Gm47814 14 24438987 to 24446403 7416 - lincRNA gene predicted gene, 47814
Tssr4343 14 24446457 to 24446463 6 - TSS region transcription start site region 4343
4933428L12Rik 14 24446554 to 24447927 1373 unclassified gene RIKEN cDNA 4933428L12 gene
Polr3a 14 24448696 to 24487058 38362 - protein coding gene polymerase (RNA) III (DNA directed) polypeptide A
Cpgi6236 14 24486590 to 24487238 648 CpG island CpG island 6236
Tssr127750 14 24486966 to 24486976 10 - TSS region transcription start site region 127750
Tssr127751 14 24486994 to 24487064 70 - TSS region transcription start site region 127751
Tssr124589 14 24487055 to 24487088 33 + TSS region transcription start site region 124589
Cpgi6237 14 24490411 to 24491327 916 CpG island CpG island 6237
Rps24 14 24490633 to 24496146 5513 + protein coding gene ribosomal protein S24
Tssr124590 14 24490678 to 24490689 11 + TSS region transcription start site region 124590
Tssr124591 14 24490709 to 24490725 16 + TSS region transcription start site region 124591
Tssr124592 14 24490749 to 24490756 7 + TSS region transcription start site region 124592
Tssr127752 14 24491751 to 24491756 5 - TSS region transcription start site region 127752
Tssr124593 14 24492828 to 24492832 4 + TSS region transcription start site region 124593
Gm31720 14 24518027 to 24527097 9070 - lncRNA gene predicted gene, 31720
4930542C16Rik 14 24597266 to 24617467 20201 - lincRNA gene RIKEN cDNA 4930542C16 gene
9430052A13Rik 14 24605434 to 24606588 1154 unclassified gene RIKEN cDNA 9430052A13 gene
Tssr127753 14 24617483 to 24617492 9 - TSS region transcription start site region 127753
4931403M11Rik 14 24617555 to 24631373 13818 + lincRNA gene RIKEN cDNA 4931403M11 gene
4930428N03Rik 14 24621028 to 24622869 1841 + lincRNA gene RIKEN cDNA 4930428N03 gene
Tssr124594 14 24622132 to 24622143 11 + TSS region transcription start site region 124594
Tssr124595 14 24622151 to 24622158 7 + TSS region transcription start site region 124595
Gm31775 14 24665189 to 24772703 107514 + lncRNA gene predicted gene, 31775
Cpgi6238 14 24779009 to 24779691 682 CpG island CpG island 6238
Gm31838 14 24781078 to 24814312 33234 + lncRNA gene predicted gene, 31838
Gm32008 14 24817855 to 24875381 57526 + lncRNA gene predicted gene, 32008
Gm31951 14 24829064 to 24830336 1272 - lncRNA gene predicted gene, 31951
Gm47906 14 24833635 to 24835089 1454 + lincRNA gene predicted gene, 47906
Gm41110 14 24878062 to 24890922 12860 - lncRNA gene predicted gene, 41110
Gm10398 14 24909414 to 24913440 4026 + lincRNA gene predicted gene 10398
D14Mit253 14 24925824 to 24925942 118 DNA segment DNA Segment, Chr 14 Massachusetts Institute of Technology 253
Modor2 14 24925824 to 57942312 33016488 QTL modifier of ocular retardation 2
Gm32068 14 24950377 to 24968194 17817 + lncRNA gene predicted gene, 32068
Gm41111 14 24975846 to 24982683 6837 - lncRNA gene predicted gene, 41111
Tssr4344 14 25011597 to 25011598 1 + TSS region transcription start site region 4344
Gm47907 14 25031097 to 25031669 572 + unclassified gene predicted gene, 47907
Tssr127754 14 25032747 to 25032749 2 - TSS region transcription start site region 127754
Gm41112 14 25050685 to 25072953 22268 + lncRNA gene predicted gene, 41112
Gm38408 14 25066904 to 25074444 7540 - lincRNA gene predicted gene, 38408
Gm47909 14 25089939 to 25090406 467 - pseudogene predicted gene, 47909
Gm32123 14 25109384 to 25112926 3542 + lincRNA gene predicted gene, 32123
Gm32224 14 25127788 to 25135852 8064 + lincRNA gene predicted gene, 32224
4930572O13Rik 14 25139795 to 25143241 3446 - lincRNA gene RIKEN cDNA 4930572O13 gene
Tssr127755 14 25143239 to 25143261 22 - TSS region transcription start site region 127755
A930006J02Rik 14 25143367 to 48778390 23635023 unclassified non-coding RNA gene RIKEN cDNA A930006J02 gene
Tssr124596 14 25178804 to 25178805 1 + TSS region transcription start site region 124596
Gm32307 14 25185486 to 25201157 15671 - lncRNA gene predicted gene, 32307
Gm32379 14 25201583 to 25211653 10070 - lncRNA gene predicted gene, 32379
Zmiz1os1 14 25257523 to 25461128 203605 - antisense lncRNA gene Zmiz1 opposite strand 1
Tssr124597 14 25298365 to 25298367 2 + TSS region transcription start site region 124597
Gm26660 14 25315873 to 25379609 63736 - lincRNA gene predicted gene, 26660
Cpgi6239 14 25317790 to 25318679 889 CpG island CpG island 6239
Cpgi6240 14 25377989 to 25378719 730 CpG island CpG island 6240
Tssr124598 14 25378087 to 25378097 10 + TSS region transcription start site region 124598
Tssr124599 14 25378236 to 25378261 25 + TSS region transcription start site region 124599
Gm41113 14 25379381 to 25383704 4323 + lncRNA gene predicted gene, 41113
D14Mit1000 14 25383050 to 25383303 253 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 1000
Gm32645 14 25397456 to 25426426 28970 + lncRNA gene predicted gene, 32645
Gm17747 14 25441641 to 25453229 11588 + lincRNA gene predicted gene, 17747
Cpgi6241 14 25457131 to 25461431 4300 CpG island CpG island 6241
Tssr124600 14 25458879 to 25458890 11 + TSS region transcription start site region 124600
Zmiz1 14 25459185 to 25666743 207558 + protein coding gene zinc finger, MIZ-type containing 1
Tssr124601 14 25459206 to 25459225 19 + TSS region transcription start site region 124601
Tssr124602 14 25459232 to 25459261 29 + TSS region transcription start site region 124602
Tssr124603 14 25459267 to 25459297 30 + TSS region transcription start site region 124603
Tssr124604 14 25459321 to 25459332 11 + TSS region transcription start site region 124604
Gm47920 14 25459980 to 25462387 2407 + sense intronic lncRNA gene predicted gene, 47920
Tssr127756 14 25460061 to 25460077 16 - TSS region transcription start site region 127756
Tssr127757 14 25460325 to 25460341 16 - TSS region transcription start site region 127757
Tssr124605 14 25460464 to 25460491 27 + TSS region transcription start site region 124605
Tssr127758 14 25461122 to 25461143 21 - TSS region transcription start site region 127758
Tssr124606 14 25462501 to 25462509 8 + TSS region transcription start site region 124606
Tssr124607 14 25465607 to 25465621 14 + TSS region transcription start site region 124607
Tssr124608 14 25466731 to 25466746 15 + TSS region transcription start site region 124608
Tssr124609 14 25466799 to 25466819 20 + TSS region transcription start site region 124609
Tssr127759 14 25467752 to 25467766 14 - TSS region transcription start site region 127759
Gm47921 14 25480054 to 25481105 1051 + sense intronic lncRNA gene predicted gene, 47921
Tssr124610 14 25481167 to 25481224 57 + TSS region transcription start site region 124610
Tssr124611 14 25481258 to 25481275 17 + TSS region transcription start site region 124611
Tssr127760 14 25493467 to 25493476 9 - TSS region transcription start site region 127760
Tssr127761 14 25517290 to 25517301 11 - TSS region transcription start site region 127761
Tssr127762 14 25517351 to 25517362 11 - TSS region transcription start site region 127762
Tssr124612 14 25517504 to 25517524 20 + TSS region transcription start site region 124612
Tssr124613 14 25529811 to 25529822 11 + TSS region transcription start site region 124613
Tssr124614 14 25529872 to 25529885 13 + TSS region transcription start site region 124614
Tssr124615 14 25529892 to 25529916 24 + TSS region transcription start site region 124615
D14Mit209 14 25531626 to 25531746 120 DNA segment DNA segment, Chr 14, Massachusetts Institute of Technology 209
Mir3075 14 25534439 to 25534523 84 + miRNA gene microRNA 3075
D030041H20Rik 14 25548389 to 25554399 6010 unclassified non-coding RNA gene RIKEN cDNA D030041H20 gene
Gm26772 14 25548390 to 25554369 5979 - lincRNA gene predicted gene, 26772
Tssr124616 14 25564269 to 25564296 27 + TSS region transcription start site region 124616
Tssr124617 14 25576138 to 25576152 14 + TSS region transcription start site region 124617
Tssr124618 14 25581592 to 25581618 26 + TSS region transcription start site region 124618
Tssr124619 14 25586542 to 25586559 17 + TSS region transcription start site region 124619
4931406H21Rik 14 25586804 to 25590661 3857 + lncRNA gene RIKEN cDNA 4931406H21 gene
Tssr127763 14 25587443 to 25587476 33 - TSS region transcription start site region 127763
Tssr127764 14 25587668 to 25587680 12 - TSS region transcription start site region 127764
Tssr124620 14 25588495 to 25588530 35 + TSS region transcription start site region 124620
Gm32497 14 25588737 to 25602941 14204 - lncRNA gene predicted gene, 32497
Tssr127765 14 25593931 to 25593943 12 - TSS region transcription start site region 127765
Tssr127766 14 25593961 to 25593981 20 - TSS region transcription start site region 127766
Tssr124621 14 25597609 to 25597612 3 + TSS region transcription start site region 124621
Gm45915 14 25603513 to 25605636 2123 + protein coding gene predicted gene, 45915
Cpgi6242 14 25606702 to 25608659 1957 CpG island CpG island 6242
Tssr124622 14 25607311 to 25607349 38 + TSS region transcription start site region 124622
Tssr124623 14 25607351 to 25607365 14 + TSS region transcription start site region 124623
Tssr124624 14 25607407 to 25607441 34 + TSS region transcription start site region 124624
Tssr124625 14 25607594 to 25607605 11 + TSS region transcription start site region 124625
Tssr124626 14 25607618 to 25607656 38 + TSS region transcription start site region 124626
Tssr124627 14 25607755 to 25607794 39 + TSS region transcription start site region 124627
Tssr124628 14 25607797 to 25607810 13 + TSS region transcription start site region 124628
Tssr124629 14 25607833 to 25607846 13 + TSS region transcription start site region 124629
Tssr124630 14 25607890 to 25607933 43 + TSS region transcription start site region 124630
Tssr124631 14 25607941 to 25607953 12 + TSS region transcription start site region 124631