Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:98347457-98687761

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi6001 13 98353989 to 98356291 2302 CpG island CpG island 6001
Tssr120803 13 98354234 to 98354250 16 + TSS region transcription start site region 120803
Foxd1 13 98354245 to 98356705 2460 + protein coding gene forkhead box D1
Tssr120804 13 98354281 to 98354288 7 + TSS region transcription start site region 120804
Tssr120805 13 98354388 to 98354399 11 + TSS region transcription start site region 120805
Tssr120806 13 98354440 to 98354451 11 + TSS region transcription start site region 120806
Tssr120807 13 98354774 to 98354790 16 + TSS region transcription start site region 120807
Tssr120808 13 98354802 to 98354809 7 + TSS region transcription start site region 120808
Tssr120809 13 98354981 to 98354997 16 + TSS region transcription start site region 120809
Tssr120810 13 98355084 to 98355096 12 + TSS region transcription start site region 120810
Tssr120811 13 98355102 to 98355114 12 + TSS region transcription start site region 120811
Tssr120812 13 98356235 to 98356238 3 + TSS region transcription start site region 120812
Cpgi6002 13 98365705 to 98367114 1409 CpG island CpG island 6002
Cpgi6003 13 98390920 to 98391610 690 CpG island CpG island 6003
Gm2445 13 98402095 to 98403083 988 - pseudogene predicted gene 2445
2310005E17Rik 13 98424110 to 98435065 10955 - lincRNA gene RIKEN cDNA 2310005E17 gene
Gm46437 13 98429333 to 98430788 1455 + lncRNA gene predicted gene, 46437
Cpgi6004 13 98429960 to 98430481 521 CpG island CpG island 6004
Gm29501 13 98476598 to 98477459 861 - lincRNA gene predicted gene 29501
Gm10320 13 98489359 to 98489841 482 - protein coding gene predicted pseudogene 10320
Cpgi6005 13 98502910 to 98503255 345 CpG island CpG island 6005
Cpgi6006 13 98504141 to 98505213 1072 CpG island CpG island 6006
Gm37425 13 98517364 to 98517938 574 - unclassified gene predicted gene, 37425
Cpgi6007 13 98517457 to 98517761 304 CpG island CpG island 6007
Gm41032 13 98529939 to 98536167 6228 - lncRNA gene predicted gene, 41032
Bdln11 13 98532770 to 98532770 0 QTL body length 11
Tssr123627 13 98535892 to 98535918 26 - TSS region transcription start site region 123627
Gm41033 13 98549116 to 98575040 25924 - lncRNA gene predicted gene, 41033
Tssr123628 13 98550771 to 98550776 5 - TSS region transcription start site region 123628
Gm48049 13 98557761 to 98558031 270 + pseudogene predicted gene, 48049
Gm22698 13 98560354 to 98560461 107 + miRNA gene predicted gene, 22698
Cpgi6008 13 98572654 to 98574147 1493 CpG island CpG island 6008
Cpgi6009 13 98588760 to 98589481 721 CpG island CpG island 6009
Gm48050 13 98608411 to 98617662 9251 - unclassified non-coding RNA gene predicted gene, 48050
Cpgi6010 13 98613218 to 98613571 353 CpG island CpG island 6010
Tssr120813 13 98613234 to 98613238 4 + TSS region transcription start site region 120813
Tssr120814 13 98613427 to 98613459 32 + TSS region transcription start site region 120814
Gm4815 13 98613501 to 98614491 990 + pseudogene predicted gene 4815
Tmem174 13 98634978 to 98637410 2432 - protein coding gene transmembrane protein 174
Cpgi6011 13 98636715 to 98637308 593 CpG island CpG island 6011
Tssr123629 13 98637330 to 98637350 20 - TSS region transcription start site region 123629
Tssr123630 13 98637354 to 98637373 19 - TSS region transcription start site region 123630
Tmem171 13 98686235 to 98694834 8599 - protein coding gene transmembrane protein 171