Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:97403200-97647455

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr120777 13 97434921 to 97434941 20 + TSS region transcription start site region 120777
Lncenc1 13 97434970 to 97497007 62037 + lincRNA gene long non-coding RNA, embryonic stem cells expressed 1
Tssr123596 13 97435061 to 97435070 9 - TSS region transcription start site region 123596
Tssr123597 13 97435921 to 97435959 38 - TSS region transcription start site region 123597
Cpgi5993 13 97435989 to 97436195 206 CpG island CpG island 5993
Gm8756 13 97458149 to 97459077 928 - pseudogene predicted gene 8756
Tssr123598 13 97482508 to 97482521 13 - TSS region transcription start site region 123598
Tssr123599 13 97482538 to 97482550 12 - TSS region transcription start site region 123599
Tssr123600 13 97482576 to 97482598 22 - TSS region transcription start site region 123600
Tssr120778 13 97482695 to 97482706 11 + TSS region transcription start site region 120778
Tssr120779 13 97482747 to 97482759 12 + TSS region transcription start site region 120779
Cpgi5994 13 97484663 to 97484977 314 CpG island CpG island 5994
Tssr120780 13 97493576 to 97493605 29 + TSS region transcription start site region 120780
Tssr120781 13 97495073 to 97495089 16 + TSS region transcription start site region 120781
Tssr120782 13 97495250 to 97495259 9 + TSS region transcription start site region 120782
Tssr120783 13 97495931 to 97495945 14 + TSS region transcription start site region 120783
Tssr120784 13 97511151 to 97511180 29 + TSS region transcription start site region 120784
Gm2379 13 97511204 to 97515730 4526 + lincRNA gene predicted gene 2379
9330199F22Rik 13 97511499 to 97513239 1740 unclassified gene RIKEN cDNA 9330199F22 gene
Gm41030 13 97523200 to 97527455 4255 - lincRNA gene predicted gene, 41030
Gm41029 13 97532569 to 97538675 6106 - lncRNA gene predicted gene, 41029
Gm48090 13 97541712 to 97543335 1623 - unclassified gene predicted gene, 48090
Tssr120785 13 97559941 to 97559978 37 + TSS region transcription start site region 120785
Tssr120786 13 97559994 to 97560008 14 + TSS region transcription start site region 120786
Gm5086 13 97560000 to 97583994 23994 + lincRNA gene predicted gene 5086
Tssr120787 13 97560022 to 97560034 12 + TSS region transcription start site region 120787
Tssr120788 13 97579738 to 97579742 4 + TSS region transcription start site region 120788
Tssr123601 13 97588077 to 97588122 45 - TSS region transcription start site region 123601
D13Mit147 13 97589125 to 97589232 107 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 147
Tssr120789 13 97589969 to 97589975 6 + TSS region transcription start site region 120789
Tssr120790 13 97600256 to 97600289 33 + TSS region transcription start site region 120790
Gm34087 13 97602610 to 97622876 20266 - lncRNA gene predicted gene, 34087
D13Mit194 13 97608214 to 97608360 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 194
Gm48070 13 97609536 to 97609817 281 + pseudogene predicted gene, 48070
D13Mit259 13 97641480 to 97641573 93 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 259