Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:85273307-88823310

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rasa1 13 85214780 to 85289130 74350 - protein coding gene RAS p21 protein activator 1
Tssr123356 13 85282895 to 85282901 6 - TSS region transcription start site region 123356
Tssr123357 13 85284075 to 85284102 27 - TSS region transcription start site region 123357
Tssr123358 13 85284628 to 85284636 8 - TSS region transcription start site region 123358
Tssr123359 13 85285459 to 85285464 5 - TSS region transcription start site region 123359
Tssr123360 13 85285759 to 85285776 17 - TSS region transcription start site region 123360
Tssr123361 13 85288031 to 85288042 11 - TSS region transcription start site region 123361
Cpgi5917 13 85288288 to 85289843 1555 CpG island CpG island 5917
Tssr123362 13 85288999 to 85289058 59 - TSS region transcription start site region 123362
Tssr123363 13 85289082 to 85289136 54 - TSS region transcription start site region 123363
Tssr123364 13 85289155 to 85289165 10 - TSS region transcription start site region 123364
Tssr123365 13 85289190 to 85289236 46 - TSS region transcription start site region 123365
Tssr123366 13 85289324 to 85289406 82 - TSS region transcription start site region 123366
Tssr123367 13 85289461 to 85289491 30 - TSS region transcription start site region 123367
D13Mit126 13 85333752 to 85333890 138 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 126
Gm37641 13 85411681 to 85411919 238 - unclassified gene predicted gene, 37641
Gm47635 13 85516402 to 85516619 217 + pseudogene predicted gene, 47635
Tssr123368 13 85538314 to 85538316 2 - TSS region transcription start site region 123368
Gm5666 13 85572976 to 85573578 602 - pseudogene predicted gene 5666
Gm47636 13 85865112 to 85865333 221 - pseudogene predicted gene, 47636
Gm46396 13 85891742 to 85892125 383 + pseudogene predicted gene, 46396
D13Mit314 13 85929019 to 85929131 112 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 314
Gm34526 13 86017038 to 86038907 21869 - lncRNA gene predicted gene, 34526
Cox7c 13 86044798 to 86046795 1997 - protein coding gene cytochrome c oxidase subunit 7C
Gm22574 13 86044989 to 86045048 59 - snoRNA gene predicted gene, 22574
D13Ertd332e 13 86045007 to 86045211 204 DNA segment DNA segment, Chr 13, ERATO Doi 332, expressed
Cpgi5918 13 86046262 to 86046944 682 CpG island CpG island 5918
Tssr123369 13 86046772 to 86046800 28 - TSS region transcription start site region 123369
Tssr123370 13 86046901 to 86046904 3 - TSS region transcription start site region 123370
Tssr123371 13 86050352 to 86050396 44 - TSS region transcription start site region 123371
Tssr123372 13 86054214 to 86054227 13 - TSS region transcription start site region 123372
Tssr120556 13 86160129 to 86160130 1 + TSS region transcription start site region 120556
Gm27025 13 86235827 to 86237727 1900 + pseudogene predicted gene, 27025
Gm25700 13 86725823 to 86725932 109 - miRNA gene predicted gene, 25700
Tssr4135 13 87048307 to 87048310 3 + TSS region transcription start site region 4135
Gm47642 13 87234439 to 87234594 155 - pseudogene predicted gene, 47642
Gm18265 13 87307726 to 87308524 798 + pseudogene predicted gene, 18265
Gm24935 13 87456778 to 87456887 109 + miRNA gene predicted gene, 24935
Tssr120557 13 87663475 to 87663478 3 + TSS region transcription start site region 120557
Tssr120558 13 87667350 to 87667355 5 + TSS region transcription start site region 120558
D13Mit27 13 87753866 to 87754064 198 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 27
Gm21232 13 87782971 to 87783976 1005 + pseudogene predicted gene, 21232
Gm41012 13 87793851 to 87799957 6106 - lncRNA gene predicted gene, 41012
Gm19239 13 87826538 to 87827059 521 + pseudogene predicted gene, 19239
Gm47649 13 87977497 to 87980299 2802 - unclassified gene predicted gene, 47649
Tssr123373 13 88125751 to 88125752 1 - TSS region transcription start site region 123373
D13Mit315 13 88184190 to 88184312 122 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 315
Gm27044 13 88184661 to 88185456 795 - pseudogene predicted gene, 27044
Gm47651 13 88382346 to 88382622 276 + pseudogene predicted gene, 47651
Tssr120559 13 88390576 to 88390580 4 + TSS region transcription start site region 120559
Gm8526 13 88478580 to 88479054 474 + pseudogene predicted gene 8526
Gm47653 13 88480632 to 88480791 159 + pseudogene predicted gene, 47653
Gm19139 13 88509280 to 88511336 2056 - pseudogene predicted gene, 19139
Gm34585 13 88521190 to 88578168 56978 + lincRNA gene predicted gene, 34585
Tssr120560 13 88521190 to 88521203 13 + TSS region transcription start site region 120560
Tssr120561 13 88521218 to 88521230 12 + TSS region transcription start site region 120561
Gm5667 13 88547216 to 88548262 1046 + pseudogene predicted gene 5667
Cpgi5919 13 88821209 to 88822282 1073 CpG island CpG island 5919
Edil3 13 88821472 to 89323223 501751 + protein coding gene EGF-like repeats and discoidin I-like domains 3
Tssr120562 13 88821474 to 88821520 46 + TSS region transcription start site region 120562
Tssr120563 13 88821543 to 88821580 37 + TSS region transcription start site region 120563
Tssr120564 13 88821582 to 88821591 9 + TSS region transcription start site region 120564
Tssr120565 13 88821594 to 88821603 9 + TSS region transcription start site region 120565
Tssr120566 13 88821606 to 88821623 17 + TSS region transcription start site region 120566
Tssr120567 13 88821669 to 88821676 7 + TSS region transcription start site region 120567
Tssr120568 13 88821679 to 88821684 5 + TSS region transcription start site region 120568
Tssr120569 13 88821708 to 88821719 11 + TSS region transcription start site region 120569
Tssr120570 13 88821732 to 88821739 7 + TSS region transcription start site region 120570
Tssr120571 13 88821750 to 88821761 11 + TSS region transcription start site region 120571
Tssr123374 13 88821774 to 88821795 21 - TSS region transcription start site region 123374
Tssr120572 13 88821882 to 88821914 32 + TSS region transcription start site region 120572
Tssr120573 13 88821916 to 88821942 26 + TSS region transcription start site region 120573
Tssr120574 13 88821943 to 88821976 33 + TSS region transcription start site region 120574
Egaq4 13 112294569 to 87753866 -24540703 QTL early growth adjusted QTL 4