Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:75639339-76059368

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr120371 13 75640156 to 75640164 8 + TSS region transcription start site region 120371
Tssr120372 13 75644863 to 75644867 4 + TSS region transcription start site region 120372
Gm4149 13 75644896 to 75645171 275 + pseudogene predicted pseudogene 4149
Mir682 13 75645046 to 75645141 95 + miRNA gene microRNA 682
Tssr4118 13 75690109 to 75690113 4 + TSS region transcription start site region 4118
Gm23012 13 75691972 to 75692054 82 + snoRNA gene predicted gene, 23012
1700037F03Rik 13 75700162 to 75707172 7010 - antisense lncRNA gene RIKEN cDNA 1700037F03 gene
Tssr120373 13 75704762 to 75704763 1 + TSS region transcription start site region 120373
Cpgi5873 13 75707059 to 75708717 1658 CpG island CpG island 5873
Tssr120374 13 75707388 to 75707399 11 + TSS region transcription start site region 120374
Tssr120375 13 75707484 to 75707510 26 + TSS region transcription start site region 120375
Ell2 13 75707484 to 75772361 64877 + protein coding gene elongation factor RNA polymerase II 2
Tssr120376 13 75707513 to 75707544 31 + TSS region transcription start site region 120376
Tssr120377 13 75707547 to 75707561 14 + TSS region transcription start site region 120377
Tssr120378 13 75707576 to 75707587 11 + TSS region transcription start site region 120378
Tssr120379 13 75711839 to 75711847 8 + TSS region transcription start site region 120379
Gm48302 13 75727279 to 75729162 1883 + sense intronic lncRNA gene predicted gene, 48302
Tssr120380 13 75749900 to 75749907 7 + TSS region transcription start site region 120380
Tssr120381 13 75750049 to 75750061 12 + TSS region transcription start site region 120381
Tssr120382 13 75751808 to 75751822 14 + TSS region transcription start site region 120382
Tssr120383 13 75754612 to 75754652 40 + TSS region transcription start site region 120383
Tssr120384 13 75756331 to 75756347 16 + TSS region transcription start site region 120384
Tssr120385 13 75761873 to 75761889 16 + TSS region transcription start site region 120385
Tssr120386 13 75761915 to 75761927 12 + TSS region transcription start site region 120386
Tssr120387 13 75763799 to 75763818 19 + TSS region transcription start site region 120387
Tssr120388 13 75763889 to 75763911 22 + TSS region transcription start site region 120388
Tssr120389 13 75764040 to 75764060 20 + TSS region transcription start site region 120389
Tssr120390 13 75764063 to 75764082 19 + TSS region transcription start site region 120390
Tssr120391 13 75765118 to 75765124 6 + TSS region transcription start site region 120391
Tssr120392 13 75766166 to 75766170 4 + TSS region transcription start site region 120392
Gm23127 13 75768068 to 75768197 129 + snoRNA gene predicted gene, 23127
Tssr120393 13 75769570 to 75769626 56 + TSS region transcription start site region 120393
Tssr120394 13 75770778 to 75770799 21 + TSS region transcription start site region 120394
Tssr120395 13 75770978 to 75771020 42 + TSS region transcription start site region 120395
Tssr120396 13 75771048 to 75771070 22 + TSS region transcription start site region 120396
Tssr120397 13 75771124 to 75771150 26 + TSS region transcription start site region 120397
Tssr120398 13 75771617 to 75771630 13 + TSS region transcription start site region 120398
Tssr120399 13 75789850 to 75789853 3 + TSS region transcription start site region 120399
Tssr120400 13 75794527 to 75794560 33 + TSS region transcription start site region 120400
Cpgi5874 13 75797815 to 75798109 294 CpG island CpG island 5874
Gm8288 13 75802705 to 75803294 589 + pseudogene predicted gene 8288
Gm41005 13 75818226 to 75847161 28935 - lncRNA gene predicted gene, 41005
Tssr4119 13 75825176 to 75825190 14 + TSS region transcription start site region 4119
Tssr123252 13 75835492 to 75835497 5 - TSS region transcription start site region 123252
Glrx 13 75839873 to 75850151 10278 + protein coding gene glutaredoxin
Tssr120401 13 75839874 to 75839881 7 + TSS region transcription start site region 120401
Tssr120402 13 75839897 to 75839928 31 + TSS region transcription start site region 120402
Tssr120403 13 75840002 to 75840044 42 + TSS region transcription start site region 120403
Tssr120404 13 75840071 to 75840085 14 + TSS region transcription start site region 120404
Tssr120405 13 75845096 to 75845100 4 + TSS region transcription start site region 120405
Tssr120406 13 75845626 to 75845632 6 + TSS region transcription start site region 120406
Tssr120407 13 75847168 to 75847191 23 + TSS region transcription start site region 120407
Tssr120408 13 75849316 to 75849327 11 + TSS region transcription start site region 120408
Tssr120409 13 75849339 to 75849368 29 + TSS region transcription start site region 120409
Tssr120410 13 75849374 to 75849383 9 + TSS region transcription start site region 120410
Tssr120411 13 75849415 to 75849432 17 + TSS region transcription start site region 120411
Rhobtb3 13 75869537 to 75943824 74287 - protein coding gene Rho-related BTB domain containing 3
Gm24163 13 75905147 to 75905278 131 + snoRNA gene predicted gene, 24163
Tssr4120 13 75906862 to 75906863 1 + TSS region transcription start site region 4120
D13Ertd219e 13 75914553 to 75914785 232 DNA segment DNA segment, Chr 13, ERATO Doi 219, expressed
Tssr123253 13 75920799 to 75920801 2 - TSS region transcription start site region 123253
Gm15528 13 75929465 to 75930328 863 - pseudogene predicted gene 15528
Tssr123254 13 75930037 to 75930057 20 - TSS region transcription start site region 123254
Cpgi5875 13 75930073 to 75930410 337 CpG island CpG island 5875
Tssr123255 13 75930235 to 75930242 7 - TSS region transcription start site region 123255
Tssr123256 13 75942294 to 75942298 4 - TSS region transcription start site region 123256
Cpgi5876 13 75943105 to 75944189 1084 CpG island CpG island 5876
Tssr120412 13 75943257 to 75943273 16 + TSS region transcription start site region 120412
Tssr123257 13 75943674 to 75943696 22 - TSS region transcription start site region 123257
Tssr123258 13 75943700 to 75943760 60 - TSS region transcription start site region 123258
Tssr123259 13 75943812 to 75943950 138 - TSS region transcription start site region 123259
Gm6311 13 75954136 to 75955013 877 + pseudogene predicted gene 6311
Tssr120413 13 75962463 to 75962466 3 + TSS region transcription start site region 120413
Gm23319 13 75963657 to 75963787 130 - snoRNA gene predicted gene, 23319
Spata9 13 75967150 to 75998972 31822 + protein coding gene spermatogenesis associated 9
Tssr120414 13 75967704 to 75967753 49 + TSS region transcription start site region 120414
Tssr120415 13 75967756 to 75967789 33 + TSS region transcription start site region 120415
D13Mit254 13 75984481 to 75984619 138 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 254
Wra1 13 75984481 to 75984619 138 QTL wheel running activity 1
Rfesd 13 76001535 to 76018712 17177 - protein coding gene Rieske (Fe-S) domain containing
Tssr123260 13 76017546 to 76017563 17 - TSS region transcription start site region 123260
Cpgi5877 13 76018077 to 76018841 764 CpG island CpG island 5877
Tssr123261 13 76018524 to 76018605 81 - TSS region transcription start site region 123261
Tssr123262 13 76018704 to 76018747 43 - TSS region transcription start site region 123262
Tssr120416 13 76018755 to 76018777 22 + TSS region transcription start site region 120416
Gm4165 13 76019807 to 76020110 303 - pseudogene predicted gene 4165
Gpr150 13 76054851 to 76056996 2145 - protein coding gene G protein-coupled receptor 150
Cpgi5878 13 76055415 to 76056971 1556 CpG island CpG island 5878
Tssr120417 13 76055687 to 76055737 50 + TSS region transcription start site region 120417
Tssr123263 13 76056339 to 76056353 14 - TSS region transcription start site region 123263
Mol3 13 112294569 to 75984481 -36310088 QTL modifier of LPS-response 3