Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:74444638-75734655

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
E430024I08Rik 13 74434781 to 74463429 28648 - lincRNA gene RIKEN cDNA E430024I08 gene
Tssr123221 13 74462658 to 74462704 46 - TSS region transcription start site region 123221
Gm49762 13 74474643 to 74476068 1425 + lincRNA gene predicted gene, 49762
Zfp825 13 74480054 to 74493992 13938 - protein coding gene zinc finger protein 825
Tssr123222 13 74493936 to 74493999 63 - TSS region transcription start site region 123222
Cpgi5867 13 74493959 to 74494129 170 CpG island CpG island 5867
Tssr120357 13 74494061 to 74494093 32 + TSS region transcription start site region 120357
Gm49763 13 74494143 to 74498470 4327 + antisense lncRNA gene predicted gene, 49763
Gm20590 13 74505022 to 74570556 65534 - pseudogene predicted gene, 20590
Gm47467 13 74509598 to 74522461 12863 - lincRNA gene predicted gene, 47467
Tssr123223 13 74522423 to 74522443 20 - TSS region transcription start site region 123223
Tssr4116 13 74533514 to 74533557 43 + TSS region transcription start site region 4116
Gm5626 13 74533526 to 74534583 1057 + pseudogene predicted gene 5626
Tssr120358 13 74546548 to 74546582 34 + TSS region transcription start site region 120358
Gm47469 13 74553910 to 74564256 10346 - lincRNA gene predicted gene, 47469
Tssr123224 13 74562089 to 74562092 3 - TSS region transcription start site region 123224
Tssr123225 13 74563807 to 74563827 20 - TSS region transcription start site region 123225
Tssr123226 13 74563843 to 74563861 18 - TSS region transcription start site region 123226
Gm47470 13 74570447 to 74570555 108 - pseudogene predicted gene, 47470
Tssr123227 13 74591363 to 74591397 34 - TSS region transcription start site region 123227
Gm46430 13 74604421 to 74618221 13800 - lincRNA gene predicted gene, 46430
Tssr120359 13 74609225 to 74609237 12 + TSS region transcription start site region 120359
Tssr123228 13 74617265 to 74617284 19 - TSS region transcription start site region 123228
Tssr123229 13 74617289 to 74617326 37 - TSS region transcription start site region 123229
Tssr120360 13 74617811 to 74617834 23 + TSS region transcription start site region 120360
Erap1 13 74639624 to 74692537 52913 + protein coding gene endoplasmic reticulum aminopeptidase 1
Cpgi5869 13 74639761 to 74640409 648 CpG island CpG island 5869
Tssr120361 13 74639834 to 74639864 30 + TSS region transcription start site region 120361
Tssr120362 13 74639866 to 74639878 12 + TSS region transcription start site region 120362
Tssr120363 13 74692220 to 74692237 17 + TSS region transcription start site region 120363
Cast 13 74692368 to 74808810 116442 - protein coding gene calpastatin
Tssr123230 13 74725408 to 74725419 11 - TSS region transcription start site region 123230
Tssr123231 13 74725453 to 74725467 14 - TSS region transcription start site region 123231
Tssr123232 13 74727334 to 74727338 4 - TSS region transcription start site region 123232
Tssr123233 13 74734195 to 74734207 12 - TSS region transcription start site region 123233
Tssr123234 13 74734209 to 74734239 30 - TSS region transcription start site region 123234
Tssr123235 13 74734242 to 74734245 3 - TSS region transcription start site region 123235
Tssr123236 13 74734255 to 74734266 11 - TSS region transcription start site region 123236
Tssr123237 13 74754340 to 74754367 27 - TSS region transcription start site region 123237
Gm6296 13 74767919 to 74768861 942 - pseudogene predicted gene 6296
Tssr123238 13 74768916 to 74768924 8 - TSS region transcription start site region 123238
Cpgi5870 13 74770466 to 74770813 347 CpG island CpG island 5870
Tssr123239 13 74770582 to 74770595 13 - TSS region transcription start site region 123239
Tssr123240 13 74770598 to 74770618 20 - TSS region transcription start site region 123240
Tssr123241 13 74770626 to 74770669 43 - TSS region transcription start site region 123241
Cpgi5871 13 74807563 to 74808724 1161 CpG island CpG island 5871
Tssr123242 13 74807884 to 74807899 15 - TSS region transcription start site region 123242
Tssr123243 13 74807913 to 74807989 76 - TSS region transcription start site region 123243
Tssr123244 13 74808527 to 74808540 13 - TSS region transcription start site region 123244
Tssr123245 13 74808544 to 74808558 14 - TSS region transcription start site region 123245
Tssr123246 13 74808559 to 74808572 13 - TSS region transcription start site region 123246
Tssr123247 13 74808610 to 74808680 70 - TSS region transcription start site region 123247
Tssr123248 13 74808733 to 74808754 21 - TSS region transcription start site region 123248
Tssr123249 13 74808761 to 74808772 11 - TSS region transcription start site region 123249
Tssr123250 13 74808807 to 74808849 42 - TSS region transcription start site region 123250
Tssr123251 13 74808852 to 74808887 35 - TSS region transcription start site region 123251
Hnrnpa1l2-ps 13 74864305 to 74865356 1051 + pseudogene heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene
D13Mit257 13 74913481 to 74913597 116 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 257
Gm30867 13 74995715 to 75012756 17041 - lncRNA gene predicted gene, 30867
Tssr120364 13 75089369 to 75089380 11 + TSS region transcription start site region 120364
Tssr120365 13 75089638 to 75089655 17 + TSS region transcription start site region 120365
Tssr120366 13 75089675 to 75089682 7 + TSS region transcription start site region 120366
Tssr120367 13 75089820 to 75089833 13 + TSS region transcription start site region 120367
Pcsk1 13 75089826 to 75134861 45035 + protein coding gene proprotein convertase subtilisin/kexin type 1
Tssr120368 13 75089846 to 75089886 40 + TSS region transcription start site region 120368
Tssr120369 13 75089899 to 75089918 19 + TSS region transcription start site region 120369
Tssr120370 13 75089947 to 75089959 12 + TSS region transcription start site region 120370
Cpgi5872 13 75090189 to 75090362 173 CpG island CpG island 5872
Gm19095 13 75199214 to 75199943 729 + pseudogene predicted gene, 19095
Gm48234 13 75479195 to 75479387 192 - pseudogene predicted gene, 48234
Gm48235 13 75509279 to 75510047 768 + pseudogene predicted gene, 48235
Gm8278 13 75515897 to 75518414 2517 - pseudogene predicted gene 8278
Gm3926 13 75523226 to 75524348 1122 - pseudogene predicted gene 3926
Tssr4117 13 75618550 to 75618551 1 + TSS region transcription start site region 4117
D13Mit312 13 75629534 to 75629654 120 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 312
Tssr120371 13 75640156 to 75640164 8 + TSS region transcription start site region 120371
Tssr120372 13 75644863 to 75644867 4 + TSS region transcription start site region 120372
Gm4149 13 75644896 to 75645171 275 + pseudogene predicted pseudogene 4149
Mir682 13 75645046 to 75645141 95 + miRNA gene microRNA 682
Tssr4118 13 75690109 to 75690113 4 + TSS region transcription start site region 4118
Gm23012 13 75691972 to 75692054 82 + snoRNA gene predicted gene, 23012
1700037F03Rik 13 75700162 to 75707172 7010 - antisense lncRNA gene RIKEN cDNA 1700037F03 gene
Tssr120373 13 75704762 to 75704763 1 + TSS region transcription start site region 120373
Cpgi5873 13 75707059 to 75708717 1658 CpG island CpG island 5873
Tssr120374 13 75707388 to 75707399 11 + TSS region transcription start site region 120374
Tssr120375 13 75707484 to 75707510 26 + TSS region transcription start site region 120375
Ell2 13 75707484 to 75772361 64877 + protein coding gene elongation factor RNA polymerase II 2
Tssr120376 13 75707513 to 75707544 31 + TSS region transcription start site region 120376
Tssr120377 13 75707547 to 75707561 14 + TSS region transcription start site region 120377
Tssr120378 13 75707576 to 75707587 11 + TSS region transcription start site region 120378
Tssr120379 13 75711839 to 75711847 8 + TSS region transcription start site region 120379
Gm48302 13 75727279 to 75729162 1883 + sense intronic lncRNA gene predicted gene, 48302