Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:71682845-73722853

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pregq3 13 20431342 to 72237070 51805728 QTL pregnancy QTL 3
rsl 13 56481436 to 72237021 15755585 heritable phenotypic marker regulator of sex limited protein-Slp
clf2 13 58806569 to 72634198 13827629 heritable phenotypic marker cleft lip 2
Gm40999 13 71729628 to 71785889 56261 - lncRNA gene predicted gene, 40999
D13Mit210 13 71760897 to 71761038 141 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 210
D13Gor1 13 71914419 to 71914882 463 DNA segment DNA segment, Chr 13, Gorin 1
Cpgi5824 13 71957259 to 71957608 349 CpG island CpG island 5824
Cpgi5825 13 71958064 to 71958721 657 CpG island CpG island 5825
Irx1 13 71958232 to 71963723 5491 - protein coding gene Iroquois homeobox 1
Cpgi5826 13 71959128 to 71960291 1163 CpG island CpG island 5826
Tssr123163 13 71960343 to 71960357 14 - TSS region transcription start site region 123163
Tssr123164 13 71960369 to 71960384 15 - TSS region transcription start site region 123164
Tssr123165 13 71961702 to 71961705 3 - TSS region transcription start site region 123165
Cpgi5827 13 71962693 to 71964354 1661 CpG island CpG island 5827
Tssr123166 13 71963693 to 71963710 17 - TSS region transcription start site region 123166
Tssr123167 13 71963713 to 71963729 16 - TSS region transcription start site region 123167
Tssr123168 13 71963730 to 71963755 25 - TSS region transcription start site region 123168
D13Mit41 13 72120378 to 72120550 172 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 41
D13Jpk2 13 72160796 to 72160989 193 DNA segment DNA segment, Chr 13, Japan, Kominami 2
D13Mit26 13 72236861 to 72237021 160 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 26
Bmch6 13 72236861 to 72237021 160 QTL bone mechanical trait 6
D13Mit24 13 72236865 to 72237070 205 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 24
Tssr123169 13 72263960 to 72263968 8 - TSS region transcription start site region 123169
Gm4052 13 72350221 to 72350671 450 + pseudogene predicted gene 4052
Cpgi5828 13 72366007 to 72366291 284 CpG island CpG island 5828
Gm47836 13 72367326 to 72371647 4321 - unclassified gene predicted gene, 47836
Rpl9-ps4 13 72454762 to 72455340 578 - pseudogene ribosomal protein L9, pseudogene 4
Gm47838 13 72467977 to 72471803 3826 + unclassified gene predicted gene, 47838
Gm4057 13 72472202 to 72472569 367 - pseudogene predicted gene 4057
Gm41000 13 72532484 to 72537564 5080 - lncRNA gene predicted gene, 41000
Gm38580 13 72542765 to 72601064 58299 - lncRNA gene predicted gene, 38580
D13Mit189 13 72556791 to 72556916 125 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 189
D13Mit48 13 72561859 to 72562003 144 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 48
Cpgi5829 13 72624018 to 72624494 476 CpG island CpG island 5829
Cpgi5830 13 72625248 to 72625484 236 CpG island CpG island 5830
Gm20554 13 72626213 to 72628564 2351 - lincRNA gene predicted gene, 20554
Cpgi5831 13 72627370 to 72629764 2394 CpG island CpG island 5831
Tssr123170 13 72628485 to 72628505 20 - TSS region transcription start site region 123170
Tssr123171 13 72628563 to 72628586 23 - TSS region transcription start site region 123171
Tssr123172 13 72628590 to 72628607 17 - TSS region transcription start site region 123172
Tssr120305 13 72628786 to 72628795 9 + TSS region transcription start site region 120305
Tssr120306 13 72628802 to 72628825 23 + TSS region transcription start site region 120306
Irx2 13 72628820 to 72634198 5378 + protein coding gene Iroquois homeobox 2
Tssr120307 13 72628831 to 72628848 17 + TSS region transcription start site region 120307
Cpgi5832 13 72630464 to 72632073 1609 CpG island CpG island 5832
Tssr120308 13 72632614 to 72632625 11 + TSS region transcription start site region 120308
Cpgi5833 13 72638430 to 72638716 286 CpG island CpG island 5833
Cpgi5834 13 72639544 to 72640089 545 CpG island CpG island 5834
Gm41001 13 72669467 to 72676554 7087 + lncRNA gene predicted gene, 41001
Tssr120309 13 72702845 to 72702853 8 + TSS region transcription start site region 120309
Gm47890 13 72702849 to 72705392 2543 + unclassified gene predicted gene, 47890
Gm47902 13 72769431 to 72786342 16911 + lincRNA gene predicted gene, 47902
D13Mit25 13 72775952 to 72776101 149 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 25
D730050B12Rik 13 72809601 to 72816763 7162 - lincRNA gene RIKEN cDNA D730050B12 gene
Tssr123173 13 72839243 to 72839289 46 - TSS region transcription start site region 123173
Cpgi5835 13 72897710 to 72897905 195 CpG island CpG island 5835
Gm30049 13 72932327 to 72939787 7460 - lncRNA gene predicted gene, 30049
D13Mit11 13 72995458 to 72995604 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 11
D13Mit11.3 13 72995603 to 72995713 110 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 11.3
Gm30154 13 73132998 to 73155973 22975 + lncRNA gene predicted gene, 30154
Cpgi5836 13 73160200 to 73160732 532 CpG island CpG island 5836
D13Mit284 13 73178561 to 73178672 111 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 284
4930555K05Rik 13 73206091 to 73229100 23009 - lncRNA gene RIKEN cDNA 4930555K05 gene
Rpl31-ps2 13 73233395 to 73233737 342 + pseudogene ribosomal protein L31, pseudogene 2
Cpgi5837 13 73259911 to 73261334 1423 CpG island CpG island 5837
Tssr120310 13 73260473 to 73260487 14 + TSS region transcription start site region 120310
Irx4 13 73260479 to 73269608 9129 + protein coding gene Iroquois homeobox 4
Tssr120311 13 73260510 to 73260546 36 + TSS region transcription start site region 120311
Tssr120312 13 73260556 to 73260569 13 + TSS region transcription start site region 120312
Cpgi5838 13 73263054 to 73264684 1630 CpG island CpG island 5838
Tssr120313 13 73264602 to 73264603 1 + TSS region transcription start site region 120313
Cpgi5839 13 73265216 to 73265738 522 CpG island CpG island 5839
Cpgi5840 13 73267505 to 73267713 208 CpG island CpG island 5840
Cpgi5841 13 73268347 to 73269529 1182 CpG island CpG island 5841
Cpgi5842 13 73270768 to 73271081 313 CpG island CpG island 5842
Cpgi5843 13 73271390 to 73272189 799 CpG island CpG island 5843
Gm48000 13 73273230 to 73273732 502 + unclassified gene predicted gene, 48000
D13Mit143.1 13 73313133 to 73313307 174 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 143.1
D13Mit143 13 73313310 to 73313452 142 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 143
Tssr120314 13 73317814 to 73317830 16 + TSS region transcription start site region 120314
Gm10263 13 73317844 to 73318143 299 + pseudogene predicted gene 10263
Ndufs6 13 73319876 to 73328482 8606 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S6
Tssr123174 13 73327960 to 73327976 16 - TSS region transcription start site region 123174
Cpgi5844 13 73328158 to 73328699 541 CpG island CpG island 5844
Tssr123175 13 73328442 to 73328467 25 - TSS region transcription start site region 123175
Tssr120315 13 73328485 to 73328509 24 + TSS region transcription start site region 120315
Tssr120316 13 73328510 to 73328553 43 + TSS region transcription start site region 120316
Cpgi5845 13 73330859 to 73331679 820 CpG island CpG island 5845
Tssr120317 13 73330982 to 73331057 75 + TSS region transcription start site region 120317
Mrpl36 13 73331009 to 73332178 1169 + protein coding gene mitochondrial ribosomal protein L36
Tssr123176 13 73344245 to 73344251 6 - TSS region transcription start site region 123176
Eprn 13 73344665 to 73347384 2719 - lincRNA gene ephemeron, early developmental lncRNA
Tssr123177 13 73346289 to 73346296 7 - TSS region transcription start site region 123177
Tssr123178 13 73346916 to 73346925 9 - TSS region transcription start site region 123178
Tssr123179 13 73346931 to 73346940 9 - TSS region transcription start site region 123179
Tssr123180 13 73346961 to 73346976 15 - TSS region transcription start site region 123180
Tssr123181 13 73347255 to 73347264 9 - TSS region transcription start site region 123181
Tssr123182 13 73347286 to 73347297 11 - TSS region transcription start site region 123182
Tssr123183 13 73347340 to 73347365 25 - TSS region transcription start site region 123183
Tssr123184 13 73347373 to 73347385 12 - TSS region transcription start site region 123184
Cpgi5846 13 73365673 to 73366110 437 CpG island CpG island 5846
Cpgi5847 13 73405839 to 73406134 295 CpG island CpG island 5847
D13Mit1002 13 73444717 to 73444900 183 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1002
Cpgi5848 13 73466987 to 73468115 1128 CpG island CpG island 5848
Lpcat1 13 73467209 to 73516420 49211 + protein coding gene lysophosphatidylcholine acyltransferase 1
Tssr120318 13 73467214 to 73467316 102 + TSS region transcription start site region 120318
Tssr120319 13 73467348 to 73467349 1 + TSS region transcription start site region 120319
Tssr120320 13 73496521 to 73496524 3 + TSS region transcription start site region 120320
Tssr120321 13 73498425 to 73498448 23 + TSS region transcription start site region 120321
Tssr120322 13 73502885 to 73502888 3 + TSS region transcription start site region 120322
Cpgi5849 13 73536182 to 73536982 800 CpG island CpG island 5849
Slc6a3 13 73536747 to 73578672 41925 + protein coding gene solute carrier family 6 (neurotransmitter transporter, dopamine), member 3
Tssr120323 13 73536781 to 73536810 29 + TSS region transcription start site region 120323
Cpgi5850 13 73603718 to 73604763 1045 CpG island CpG island 5850
Tssr123185 13 73603893 to 73603943 50 - TSS region transcription start site region 123185
Tssr120324 13 73603955 to 73603966 11 + TSS region transcription start site region 120324
Clptm1l 13 73604006 to 73620605 16599 + protein coding gene CLPTM1-like
Tssr120325 13 73604007 to 73604120 113 + TSS region transcription start site region 120325
Tssr120326 13 73604135 to 73604146 11 + TSS region transcription start site region 120326
Cpgi5851 13 73626705 to 73627513 808 CpG island CpG island 5851
Tssr120327 13 73626886 to 73626937 51 + TSS region transcription start site region 120327
Tert 13 73626911 to 73649843 22932 + protein coding gene telomerase reverse transcriptase
Tssr120328 13 73627165 to 73627183 18 + TSS region transcription start site region 120328
Tssr120329 13 73627185 to 73627197 12 + TSS region transcription start site region 120329
Tssr120330 13 73648176 to 73648198 22 + TSS region transcription start site region 120330
Slc6a18 13 73661752 to 73678023 16271 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 18
Tssr123186 13 73677989 to 73677998 9 - TSS region transcription start site region 123186
Tssr123187 13 73678005 to 73678026 21 - TSS region transcription start site region 123187
Tssr123188 13 73678029 to 73678040 11 - TSS region transcription start site region 123188
Tssr123189 13 73678155 to 73678180 25 - TSS region transcription start site region 123189
Slc6a19 13 73679745 to 73700695 20950 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 19
Tssr123190 13 73689070 to 73689079 9 - TSS region transcription start site region 123190
Tssr123191 13 73689098 to 73689114 16 - TSS region transcription start site region 123191
Tssr123192 13 73689143 to 73689166 23 - TSS region transcription start site region 123192
Tssr123193 13 73692566 to 73692577 11 - TSS region transcription start site region 123193
Tssr123194 13 73692600 to 73692640 40 - TSS region transcription start site region 123194
Tssr4114 13 73699510 to 73699512 2 + TSS region transcription start site region 4114
Slc6a19os 13 73699826 to 73709853 10027 + antisense lncRNA gene solute carrier family 6 (neurotransmitter transporter), member 19, opposite strand
Tssr120331 13 73699949 to 73699963 14 + TSS region transcription start site region 120331
Tssr123195 13 73700688 to 73700702 14 - TSS region transcription start site region 123195
Tssr123196 13 73700721 to 73700728 7 - TSS region transcription start site region 123196
Tssr120332 13 73703719 to 73703724 5 + TSS region transcription start site region 120332