Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:65166228-65596866

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5786 13 65175736 to 65176651 915 CpG island CpG island 5786
Nlrp4f 13 65177111 to 65205716 28605 - protein coding gene NLR family, pyrin domain containing 4F
Tssr123075 13 65205961 to 65205969 8 - TSS region transcription start site region 123075
Gm47249 13 65212111 to 65214903 2792 + lincRNA gene predicted gene, 47249
Cpgi5787 13 65240675 to 65242729 2054 CpG island CpG island 5787
Tssr120225 13 65240918 to 65240970 52 + TSS region transcription start site region 120225
Tssr120226 13 65241474 to 65241499 25 + TSS region transcription start site region 120226
Tssr120227 13 65241506 to 65241526 20 + TSS region transcription start site region 120227
Gm36445 13 65241753 to 65250154 8401 + lincRNA gene predicted gene, 36445
Gm47250 13 65243717 to 65243867 150 - pseudogene predicted gene, 47250
Gm47251 13 65252704 to 65253703 999 - lincRNA gene predicted gene, 47251
Cpgi5788 13 65257285 to 65257657 372 CpG island CpG island 5788
Cpgi5789 13 65258071 to 65260151 2080 CpG island CpG island 5789
Gm10775 13 65259539 to 65260826 1287 + protein coding gene predicted gene 10775
Gm47254 13 65264677 to 65264878 201 - pseudogene predicted gene, 47254
Cpgi5790 13 65278484 to 65279092 608 CpG island CpG island 5790
Zfp369 13 65278519 to 65297804 19285 + protein coding gene zinc finger protein 369
Tssr123076 13 65278709 to 65278752 43 - TSS region transcription start site region 123076
Tssr120228 13 65278795 to 65278808 13 + TSS region transcription start site region 120228
Tssr120229 13 65278810 to 65278838 28 + TSS region transcription start site region 120229
Tssr120230 13 65278839 to 65278866 27 + TSS region transcription start site region 120230
Gm47258 13 65289453 to 65290794 1341 + unclassified gene predicted gene, 47258
Cpgi5791 13 65310023 to 65310207 184 CpG island CpG island 5791
Cpgi5792 13 65311304 to 65311656 352 CpG island CpG island 5792
Gm3800 13 65313758 to 65314311 553 + pseudogene predicted gene 3800
Gm47263 13 65332907 to 65333113 206 - pseudogene predicted gene, 47263
Gm7762 13 65336862 to 65348585 11723 - lincRNA gene predicted gene 7762
Gm47264 13 65345127 to 65345282 155 + pseudogene predicted gene, 47264
Cpgi5793 13 65352300 to 65352537 237 CpG island CpG island 5793
Vmn2r-ps95 13 65353256 to 65364427 11171 - pseudogene vomeronasal 2, receptor, pseudogene 95
Gm7768 13 65368150 to 65368746 596 - pseudogene predicted gene 7768
Gm40983 13 65380329 to 65382097 1768 + lincRNA gene predicted gene, 40983
Gm40982 13 65381228 to 65381866 638 - lncRNA gene predicted gene, 40982
Gm48103 13 65396007 to 65396138 131 - pseudogene predicted gene, 48103
Gm31714 13 65396483 to 65415122 18639 - protein coding gene predicted gene, 31714
Gm21930 13 65396555 to 65397678 1123 - pseudogene predicted gene, 21930
Gm48111 13 65404296 to 65408136 3840 + pseudogene predicted gene, 48111
Cbx3-ps5 13 65416601 to 65417144 543 + pseudogene chromobox 3, pseudogene 5
Vmn2r-ps96 13 65421636 to 65435538 13902 - pseudogene vomeronasal 2, receptor, pseudogene 96
Hmgb1-ps11 13 65436524 to 65437144 620 - pseudogene high mobility group box 1, pseudogene 11
Gm40985 13 65461756 to 65469447 7691 + lncRNA gene predicted gene, 40985
Gm48136 13 65478385 to 65479292 907 - pseudogene predicted gene, 48136
Gm48165 13 65487439 to 65624203 136764 + pseudogene predicted gene, 48165
Gm48168 13 65491789 to 65496793 5004 - lincRNA gene predicted gene, 48168
Gm48166 13 65493490 to 65630774 137284 + lincRNA gene predicted gene, 48166
Gm10139 13 65512678 to 65512848 170 + protein coding gene predicted gene 10139
Gm48171 13 65514187 to 65514978 791 + pseudogene predicted gene, 48171
Gm48169 13 65518174 to 65518412 238 + pseudogene predicted gene, 48169
Gm48167 13 65541990 to 65542205 215 - pseudogene predicted gene, 48167
Tssr123077 13 65557690 to 65557709 19 - TSS region transcription start site region 123077
Cbx3-ps2 13 65559168 to 65559711 543 + pseudogene chromobox 3, pseudogene 2
Vmn2r-ps97 13 65564185 to 65575340 11155 - pseudogene vomeronasal 2, receptor, pseudogene 97
Gm3829 13 65579063 to 65579659 596 - pseudogene predicted gene 3829
Gm26639 13 65590293 to 65591561 1268 - lincRNA gene predicted gene, 26639