Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:5865548-6704420

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Klf6 13 5861489 to 5870393 8904 + protein coding gene Kruppel-like factor 6
Tssr118253 13 5866410 to 5866427 17 + TSS region transcription start site region 118253
Tssr118254 13 5866437 to 5866458 21 + TSS region transcription start site region 118254
Tssr118255 13 5867567 to 5867604 37 + TSS region transcription start site region 118255
Tssr118256 13 5867613 to 5867642 29 + TSS region transcription start site region 118256
Tssr118257 13 5867695 to 5867730 35 + TSS region transcription start site region 118257
Tssr118258 13 5867737 to 5867757 20 + TSS region transcription start site region 118258
Tssr121323 13 5867844 to 5867851 7 - TSS region transcription start site region 121323
Tssr118259 13 5867886 to 5867898 12 + TSS region transcription start site region 118259
Tssr118260 13 5867915 to 5867931 16 + TSS region transcription start site region 118260
Tssr118261 13 5868083 to 5868094 11 + TSS region transcription start site region 118261
Tssr118262 13 5868381 to 5868394 13 + TSS region transcription start site region 118262
Tssr118263 13 5868398 to 5868409 11 + TSS region transcription start site region 118263
Tssr118264 13 5868439 to 5868464 25 + TSS region transcription start site region 118264
Tssr118265 13 5868478 to 5868497 19 + TSS region transcription start site region 118265
Tssr118266 13 5868511 to 5868523 12 + TSS region transcription start site region 118266
Tssr118267 13 5868562 to 5868573 11 + TSS region transcription start site region 118267
Tssr118268 13 5868588 to 5868621 33 + TSS region transcription start site region 118268
Tssr118269 13 5868638 to 5868656 18 + TSS region transcription start site region 118269
Tssr118270 13 5868749 to 5868761 12 + TSS region transcription start site region 118270
Tssr118271 13 5868815 to 5868827 12 + TSS region transcription start site region 118271
Tssr118272 13 5868872 to 5868898 26 + TSS region transcription start site region 118272
Tssr118273 13 5868948 to 5868966 18 + TSS region transcription start site region 118273
Tssr118274 13 5869018 to 5869089 71 + TSS region transcription start site region 118274
Tssr118275 13 5869118 to 5869129 11 + TSS region transcription start site region 118275
Tssr118276 13 5869456 to 5869477 21 + TSS region transcription start site region 118276
Tssr118277 13 5869502 to 5869532 30 + TSS region transcription start site region 118277
Tssr118278 13 5869639 to 5869718 79 + TSS region transcription start site region 118278
Tssr118279 13 5871600 to 5871609 9 + TSS region transcription start site region 118279
Tssr118280 13 5887085 to 5887121 36 + TSS region transcription start site region 118280
Gm47507 13 5887109 to 5928045 40936 + lincRNA gene predicted gene, 47507
Gm46401 13 5915706 to 6013963 98257 + lincRNA gene predicted gene, 46401
Gm26259 13 5997455 to 5997551 96 - miRNA gene predicted gene, 26259
Tssr118281 13 6009616 to 6009621 5 + TSS region transcription start site region 118281
Gm47514 13 6024533 to 6029004 4471 - lincRNA gene predicted gene, 47514
Gm47548 13 6073113 to 6073782 669 - lincRNA gene predicted gene, 47548
Tssr3985 13 6073865 to 6073867 2 + TSS region transcription start site region 3985
D13Mit205 13 6077760 to 6077881 121 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 205
Tssr121324 13 6109068 to 6109078 10 - TSS region transcription start site region 121324
Tssr121325 13 6109097 to 6109108 11 - TSS region transcription start site region 121325
Tssr3986 13 6123861 to 6123866 5 + TSS region transcription start site region 3986
Gm47549 13 6269108 to 6277026 7918 + lincRNA gene predicted gene, 47549
Gm35615 13 6280548 to 6289420 8872 - lincRNA gene predicted gene, 35615
D13Mit152 13 6302343 to 6302491 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 152
Gm35671 13 6307568 to 6320059 12491 + lncRNA gene predicted gene, 35671
Gm28465 13 6395716 to 6398740 3024 + lincRNA gene predicted gene 28465
Tshp13 13 6404489 to 6404636 147 QTL tooth shape 13
Skull19 13 6404489 to 6404636 147 QTL skull morphology 19
D13Mit1 13 6404489 to 6404636 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1
Adip7 13 6404489 to 6404636 147 QTL adiposity 7
D13Mit1.2 13 6404614 to 6404849 235 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1.2
Tssr121326 13 6404713 to 6404732 19 - TSS region transcription start site region 121326
2900042G08Rik 13 6530595 to 6531244 649 + unclassified gene RIKEN cDNA 2900042G08 gene
D13Mit302 13 6531826 to 6531947 121 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 302
Cpgi5254 13 6547900 to 6548370 470 CpG island CpG island 5254
Pitrm1 13 6548122 to 6580158 32036 + protein coding gene pitrilysin metallepetidase 1
Tssr118282 13 6548135 to 6548146 11 + TSS region transcription start site region 118282
Tssr118283 13 6548154 to 6548174 20 + TSS region transcription start site region 118283
Tssr118284 13 6548176 to 6548190 14 + TSS region transcription start site region 118284
Tssr118285 13 6555394 to 6555434 40 + TSS region transcription start site region 118285
Tssr118286 13 6558468 to 6558474 6 + TSS region transcription start site region 118286
Tssr118287 13 6559387 to 6559427 40 + TSS region transcription start site region 118287
Tssr118288 13 6563469 to 6563478 9 + TSS region transcription start site region 118288
Pfkp 13 6579874 to 6648792 68918 - protein coding gene phosphofructokinase, platelet
Tssr121327 13 6595903 to 6595907 4 - TSS region transcription start site region 121327
Tssr121328 13 6598378 to 6598382 4 - TSS region transcription start site region 121328
Tssr121329 13 6604379 to 6604395 16 - TSS region transcription start site region 121329
Tssr118289 13 6604979 to 6605008 29 + TSS region transcription start site region 118289
Tssr121330 13 6605028 to 6605063 35 - TSS region transcription start site region 121330
Cpgi5255 13 6621885 to 6622159 274 CpG island CpG island 5255
Gm35730 13 6631534 to 6648563 17029 + lncRNA gene predicted gene, 35730
Tssr121331 13 6636653 to 6636686 33 - TSS region transcription start site region 121331
Tssr121332 13 6640662 to 6640679 17 - TSS region transcription start site region 121332
Tssr121333 13 6640789 to 6640809 20 - TSS region transcription start site region 121333
Cpgi5256 13 6647082 to 6647460 378 CpG island CpG island 5256
Cpgi5257 13 6648444 to 6649123 679 CpG island CpG island 5257
Tssr121334 13 6648696 to 6648703 7 - TSS region transcription start site region 121334
Tssr121335 13 6648717 to 6648772 55 - TSS region transcription start site region 121335
Tssr121336 13 6648781 to 6648789 8 - TSS region transcription start site region 121336
Gm10029 13 6662565 to 6662894 329 - pseudogene predicted gene 10029
Gm48238 13 6673139 to 6673408 269 + pseudogene predicted gene, 48238