Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:56726363-58126367

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smad5 13 56703010 to 56742377 39367 + protein coding gene SMAD family member 5
Tssr120052 13 56728905 to 56728909 4 + TSS region transcription start site region 120052
D13Mit208 13 56732406 to 56732550 144 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 208
Tssr120053 13 56747784 to 56747801 17 + TSS region transcription start site region 120053
Tssr120054 13 56747967 to 56747979 12 + TSS region transcription start site region 120054
Gm45623 13 56752371 to 56753827 1456 - protein coding gene predicted gene 45623
Cpgi5707 13 56752399 to 56754152 1753 CpG island CpG island 5707
Tssr122793 13 56753814 to 56753854 40 - TSS region transcription start site region 122793
Trpc7 13 56773113 to 56895993 122880 - protein coding gene transient receptor potential cation channel, subfamily C, member 7
Cpgi5708 13 56806846 to 56807177 331 CpG island CpG island 5708
Cpgi5709 13 56810284 to 56810589 305 CpG island CpG island 5709
Tssr120055 13 56810420 to 56810459 39 + TSS region transcription start site region 120055
D13Mit185 13 56829432 to 56829580 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 185
Cpgi5710 13 56887285 to 56887935 650 CpG island CpG island 5710
Cpgi5711 13 56895429 to 56895697 268 CpG island CpG island 5711
Tssr122794 13 56895774 to 56895793 19 - TSS region transcription start site region 122794
Gm22777 13 56930820 to 56930948 128 - snoRNA gene predicted gene, 22777
Gm40962 13 56963730 to 56964660 930 + lncRNA gene predicted gene, 40962
Tssr120056 13 56963841 to 56963845 4 + TSS region transcription start site region 120056
Gm33140 13 56993712 to 57003774 10062 + lncRNA gene predicted gene, 33140
Gm48174 13 57239847 to 57240255 408 + pseudogene predicted gene, 48174
Gm33197 13 57242452 to 57246455 4003 - lncRNA gene predicted gene, 33197
Gm48176 13 57276678 to 57277128 450 + pseudogene predicted gene, 48176
Cpgi5712 13 57282223 to 57282403 180 CpG island CpG island 5712
Tssr120057 13 57282345 to 57282365 20 + TSS region transcription start site region 120057
1700072F12Rik 13 57282363 to 57283266 903 + lncRNA gene RIKEN cDNA 1700072F12 gene
Gm33294 13 57294128 to 57440352 146224 + lncRNA gene predicted gene, 33294
Tssr4085 13 57332010 to 57332011 1 + TSS region transcription start site region 4085
Cpgi5713 13 57338108 to 57338391 283 CpG island CpG island 5713
Spock1 13 57421195 to 57908332 487137 - protein coding gene sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
Tssr122795 13 57426363 to 57426367 4 - TSS region transcription start site region 122795
Gm33240 13 57445000 to 57450938 5938 + lncRNA gene predicted gene, 33240
Tssr122796 13 57455160 to 57455164 4 - TSS region transcription start site region 122796
D13Mit65 13 57575805 to 57575941 136 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 65
2900064B16Rik 13 57644149 to 57645379 1230 unclassified gene RIKEN cDNA 2900064B16 gene
Tssr122797 13 57695802 to 57695806 4 - TSS region transcription start site region 122797
Dp(13Spock1)1Tac 13 57726474 to 57796000 69526 cytogenetic marker duplication, Chr 13, Taconic 1
Tssr122798 13 57798728 to 57798734 6 - TSS region transcription start site region 122798
Tssr4086 13 57882266 to 57882271 5 - TSS region transcription start site region 4086
Tssr122799 13 57884377 to 57884391 14 - TSS region transcription start site region 122799
Cpgi5714 13 57907228 to 57908622 1394 CpG island CpG island 5714
Tssr122800 13 57908310 to 57908321 11 - TSS region transcription start site region 122800
Tssr122801 13 57908324 to 57908339 15 - TSS region transcription start site region 122801
D13Mit52 13 57908830 to 57908975 145 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 52
Cpgi5715 13 57995447 to 57995618 171 CpG island CpG island 5715
Klhl3 13 58000228 to 58113592 113364 - protein coding gene kelch-like 3
Tssr122802 13 58001848 to 58001853 5 - TSS region transcription start site region 122802
Tssr122803 13 58007862 to 58007869 7 - TSS region transcription start site region 122803
Tssr122804 13 58020945 to 58020950 5 - TSS region transcription start site region 122804
Mir874 13 58023125 to 58023200 75 - miRNA gene microRNA 874
Cpgi5716 13 58067844 to 58067997 153 CpG island CpG island 5716
Cpgi5717 13 58071248 to 58071691 443 CpG island CpG island 5717
Tssr120058 13 58071483 to 58071489 6 + TSS region transcription start site region 120058
Tssr120059 13 58071521 to 58071530 9 + TSS region transcription start site region 120059
Gm33389 13 58071690 to 58113135 41445 + lncRNA gene predicted gene, 33389
Tssr120060 13 58073259 to 58073294 35 + TSS region transcription start site region 120060
Cpgi5718 13 58095089 to 58095453 364 CpG island CpG island 5718
D530015H24Rik 13 58098287 to 58099339 1052 unclassified gene RIKEN cDNA D530015H24 gene
Cpgi5719 13 58112873 to 58113818 945 CpG island CpG island 5719
Tssr122805 13 58113281 to 58113297 16 - TSS region transcription start site region 122805
Tssr122806 13 58113595 to 58113620 25 - TSS region transcription start site region 122806
Tssr122807 13 58113621 to 58113655 34 - TSS region transcription start site region 122807
Tssr122808 13 58123411 to 58123428 17 - TSS region transcription start site region 122808
Hnrnpa0 13 58125879 to 58128556 2677 - protein coding gene heterogeneous nuclear ribonucleoprotein A0