Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:54764599-54985063

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sncb 13 54758860 to 54766595 7735 - protein coding gene synuclein, beta
Tssr122651 13 54765593 to 54765615 22 - TSS region transcription start site region 122651
Tssr122652 13 54765629 to 54765648 19 - TSS region transcription start site region 122652
Cpgi5651 13 54765636 to 54766710 1074 CpG island CpG island 5651
Tssr122653 13 54765704 to 54765720 16 - TSS region transcription start site region 122653
Tssr122654 13 54765848 to 54765907 59 - TSS region transcription start site region 122654
Tssr122655 13 54766500 to 54766503 3 - TSS region transcription start site region 122655
Tssr122656 13 54766553 to 54766572 19 - TSS region transcription start site region 122656
Gm16249 13 54777514 to 54783091 5577 - antisense lncRNA gene predicted gene 16249
Tssr119899 13 54783988 to 54783993 5 + TSS region transcription start site region 119899
Eif4e1b 13 54783998 to 54788459 4461 + protein coding gene eukaryotic translation initiation factor 4E family member 1B
Cpgi5652 13 54788997 to 54790131 1134 CpG island CpG island 5652
Tspan17 13 54789377 to 54796776 7399 + protein coding gene tetraspanin 17
Tssr119900 13 54789426 to 54789497 71 + TSS region transcription start site region 119900
Tssr119901 13 54789500 to 54789509 9 + TSS region transcription start site region 119901
Tssr119902 13 54789984 to 54789989 5 + TSS region transcription start site region 119902
Gm16250 13 54840649 to 54840904 255 - pseudogene predicted gene 16250
Gm40959 13 54858135 to 54874869 16734 - lncRNA gene predicted gene, 40959
Cpgi5653 13 54874599 to 54875063 464 CpG island CpG island 5653
Gm31188 13 54876135 to 54878598 2463 + lncRNA gene predicted gene, 31188
Tssr119903 13 54876160 to 54876185 25 + TSS region transcription start site region 119903
Gm29431 13 54887470 to 54888013 543 + lincRNA gene predicted gene 29431
Tssr119904 13 54913226 to 54913227 1 + TSS region transcription start site region 119904
Tssr119905 13 54913229 to 54913240 11 + TSS region transcription start site region 119905
5330429C05Rik 13 54913235 to 54914479 1244 + lincRNA gene RIKEN cDNA 5330429C05 gene
Tssr119906 13 54913249 to 54913250 1 + TSS region transcription start site region 119906
4930526F13Rik 13 54927748 to 54930753 3005 - lincRNA gene RIKEN cDNA 4930526F13 gene
Tssr122657 13 54930199 to 54930213 14 - TSS region transcription start site region 122657
Tssr122658 13 54930229 to 54930246 17 - TSS region transcription start site region 122658
Tssr122659 13 54930257 to 54930265 8 - TSS region transcription start site region 122659
Gm31313 13 54933420 to 54949336 15916 - lncRNA gene predicted gene, 31313
Cpgi5654 13 54948427 to 54950370 1943 CpG island CpG island 5654
Tssr119907 13 54949363 to 54949386 23 + TSS region transcription start site region 119907
Tssr119908 13 54949388 to 54949481 93 + TSS region transcription start site region 119908
Unc5a 13 54949411 to 55006018 56607 + protein coding gene unc-5 netrin receptor A
Cpgi5655 13 54955579 to 54956589 1010 CpG island CpG island 5655