Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:54581784-54704063

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nop16 13 54584191 to 54590074 5883 - protein coding gene NOP16 nucleolar protein
Tssr122614 13 54589142 to 54589147 5 - TSS region transcription start site region 122614
Cpgi5642 13 54589620 to 54591081 1461 CpG island CpG island 5642
Tssr119879 13 54589926 to 54589952 26 + TSS region transcription start site region 119879
Tssr122615 13 54590013 to 54590034 21 - TSS region transcription start site region 122615
Tssr122616 13 54590047 to 54590089 42 - TSS region transcription start site region 122616
Tssr119880 13 54590204 to 54590218 14 + TSS region transcription start site region 119880
Tssr119881 13 54590221 to 54590267 46 + TSS region transcription start site region 119881
Higd2a 13 54590231 to 54591147 916 + protein coding gene HIG1 domain family, member 2A
Tssr119882 13 54590753 to 54590769 16 + TSS region transcription start site region 119882
Cltb 13 54592939 to 54611405 18466 - protein coding gene clathrin, light polypeptide (Lcb)
Tssr122617 13 54593998 to 54594009 11 - TSS region transcription start site region 122617
Cpgi5643 13 54598801 to 54599294 493 CpG island CpG island 5643
Tssr122618 13 54598830 to 54598841 11 - TSS region transcription start site region 122618
Tssr122619 13 54607097 to 54607114 17 - TSS region transcription start site region 122619
Cpgi5644 13 54610512 to 54611868 1356 CpG island CpG island 5644
Tssr122620 13 54611274 to 54611297 23 - TSS region transcription start site region 122620
Tssr122621 13 54611309 to 54611326 17 - TSS region transcription start site region 122621
Tssr122622 13 54611332 to 54611387 55 - TSS region transcription start site region 122622
Tssr122623 13 54611527 to 54611540 13 - TSS region transcription start site region 122623
Cpgi5645 13 54621537 to 54622437 900 CpG island CpG island 5645
Tssr119883 13 54621780 to 54621793 13 + TSS region transcription start site region 119883
Faf2 13 54621784 to 54664063 42279 + protein coding gene Fas associated factor family member 2
Tssr119884 13 54621801 to 54621841 40 + TSS region transcription start site region 119884
Tssr119885 13 54633297 to 54633301 4 + TSS region transcription start site region 119885
D13Mit96 13 54655739 to 54655845 106 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 96
D13Mit96.1 13 54655814 to 54656022 208 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 96.1
Rn4.5s-ps3 13 54656909 to 54657002 93 - pseudogene 4.5s RNA, pseudogene 3
Rnf44 13 54679399 to 54693907 14508 - protein coding gene ring finger protein 44
Tssr122624 13 54683157 to 54683185 28 - TSS region transcription start site region 122624
Tssr122625 13 54683687 to 54683719 32 - TSS region transcription start site region 122625
Tssr122626 13 54684082 to 54684114 32 - TSS region transcription start site region 122626
Cpgi5646 13 54686862 to 54688425 1563 CpG island CpG island 5646
Tssr122627 13 54687216 to 54687232 16 - TSS region transcription start site region 122627
Tssr119886 13 54687309 to 54687323 14 + TSS region transcription start site region 119886
Tssr122628 13 54687623 to 54687643 20 - TSS region transcription start site region 122628
Tssr122629 13 54687644 to 54687688 44 - TSS region transcription start site region 122629
Tssr122630 13 54687696 to 54687809 113 - TSS region transcription start site region 122630
Tssr119887 13 54687872 to 54687887 15 + TSS region transcription start site region 119887
Tssr119888 13 54687933 to 54687955 22 + TSS region transcription start site region 119888
Tssr122631 13 54688065 to 54688093 28 - TSS region transcription start site region 122631
Tssr122632 13 54688099 to 54688145 46 - TSS region transcription start site region 122632
Tssr122633 13 54688184 to 54688211 27 - TSS region transcription start site region 122633
Tssr122634 13 54688246 to 54688263 17 - TSS region transcription start site region 122634
Tssr122635 13 54688264 to 54688284 20 - TSS region transcription start site region 122635
Tssr122636 13 54691786 to 54691793 7 - TSS region transcription start site region 122636
Cpgi5647 13 54693345 to 54694710 1365 CpG island CpG island 5647
Tssr122637 13 54693794 to 54693888 94 - TSS region transcription start site region 122637
Tssr119889 13 54701435 to 54701446 11 + TSS region transcription start site region 119889
Tssr119890 13 54701457 to 54701479 22 + TSS region transcription start site region 119890
Cdhr2 13 54701463 to 54736662 35199 + protein coding gene cadherin-related family member 2