Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:54540753-54640769

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Simc1 13 54503779 to 54551290 47511 + protein coding gene SUMO-interacting motifs containing 1
4833439L19Rik 13 54551218 to 54565382 14164 - protein coding gene RIKEN cDNA 4833439L19 gene
Tssr122611 13 54551907 to 54551939 32 - TSS region transcription start site region 122611
Cpgi5640 13 54564663 to 54565548 885 CpG island CpG island 5640
Tssr122612 13 54565299 to 54565362 63 - TSS region transcription start site region 122612
Tssr122613 13 54565368 to 54565386 18 - TSS region transcription start site region 122613
Tssr119873 13 54571020 to 54571069 49 + TSS region transcription start site region 119873
Cpgi5641 13 54574848 to 54575879 1031 CpG island CpG island 5641
Tssr119874 13 54575008 to 54575017 9 + TSS region transcription start site region 119874
Arl10 13 54575015 to 54581128 6113 + protein coding gene ADP-ribosylation factor-like 10
Tssr119875 13 54575020 to 54575093 73 + TSS region transcription start site region 119875
Tssr119876 13 54577902 to 54577918 16 + TSS region transcription start site region 119876
Gm24195 13 54578113 to 54578249 136 + miRNA gene predicted gene, 24195
Tssr119877 13 54581126 to 54581170 44 + TSS region transcription start site region 119877
Tssr119878 13 54581696 to 54581702 6 + TSS region transcription start site region 119878
Nop16 13 54584191 to 54590074 5883 - protein coding gene NOP16 nucleolar protein
Tssr122614 13 54589142 to 54589147 5 - TSS region transcription start site region 122614
Cpgi5642 13 54589620 to 54591081 1461 CpG island CpG island 5642
Tssr119879 13 54589926 to 54589952 26 + TSS region transcription start site region 119879
Tssr122615 13 54590013 to 54590034 21 - TSS region transcription start site region 122615
Tssr122616 13 54590047 to 54590089 42 - TSS region transcription start site region 122616
Tssr119880 13 54590204 to 54590218 14 + TSS region transcription start site region 119880
Tssr119881 13 54590221 to 54590267 46 + TSS region transcription start site region 119881
Higd2a 13 54590231 to 54591147 916 + protein coding gene HIG1 domain family, member 2A
Tssr119882 13 54590753 to 54590769 16 + TSS region transcription start site region 119882
Cltb 13 54592939 to 54611405 18466 - protein coding gene clathrin, light polypeptide (Lcb)
Tssr122617 13 54593998 to 54594009 11 - TSS region transcription start site region 122617
Cpgi5643 13 54598801 to 54599294 493 CpG island CpG island 5643
Tssr122618 13 54598830 to 54598841 11 - TSS region transcription start site region 122618
Tssr122619 13 54607097 to 54607114 17 - TSS region transcription start site region 122619
Cpgi5644 13 54610512 to 54611868 1356 CpG island CpG island 5644
Tssr122620 13 54611274 to 54611297 23 - TSS region transcription start site region 122620
Tssr122621 13 54611309 to 54611326 17 - TSS region transcription start site region 122621
Tssr122622 13 54611332 to 54611387 55 - TSS region transcription start site region 122622
Tssr122623 13 54611527 to 54611540 13 - TSS region transcription start site region 122623
Cpgi5645 13 54621537 to 54622437 900 CpG island CpG island 5645
Tssr119883 13 54621780 to 54621793 13 + TSS region transcription start site region 119883
Faf2 13 54621784 to 54664063 42279 + protein coding gene Fas associated factor family member 2
Tssr119884 13 54621801 to 54621841 40 + TSS region transcription start site region 119884
Tssr119885 13 54633297 to 54633301 4 + TSS region transcription start site region 119885