Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:54381397-54581611

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplx2 13 54371349 to 54383917 12568 + protein coding gene complexin 2
Tssr119861 13 54381774 to 54381786 12 + TSS region transcription start site region 119861
Tssr119862 13 54382084 to 54382095 11 + TSS region transcription start site region 119862
Tssr119863 13 54382535 to 54382552 17 + TSS region transcription start site region 119863
Tssr119864 13 54382568 to 54382583 15 + TSS region transcription start site region 119864
Tssr119865 13 54382642 to 54382653 11 + TSS region transcription start site region 119865
Tssr119866 13 54382667 to 54382686 19 + TSS region transcription start site region 119866
Tssr119867 13 54382733 to 54382752 19 + TSS region transcription start site region 119867
Tssr119868 13 54382763 to 54382783 20 + TSS region transcription start site region 119868
Tssr119869 13 54382793 to 54382866 73 + TSS region transcription start site region 119869
Gm16248 13 54399092 to 54399334 242 - lincRNA gene predicted gene 16248
Tssr122607 13 54399246 to 54399251 5 - TSS region transcription start site region 122607
Tssr122608 13 54412367 to 54412389 22 - TSS region transcription start site region 122608
Gm22668 13 54429441 to 54429700 259 - unclassified non-coding RNA gene predicted gene, 22668
Thoc3 13 54458837 to 54468840 10003 - protein coding gene THO complex 3
Cpgi5637 13 54468255 to 54469015 760 CpG island CpG island 5637
Tssr122609 13 54468805 to 54468862 57 - TSS region transcription start site region 122609
D13Mit54 13 54478184 to 54478304 120 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 54
Cpgi5638 13 54481397 to 54481611 214 CpG island CpG island 5638
Gm2830 13 54499705 to 54500089 384 - pseudogene predicted gene 2830
Cpgi5639 13 54503257 to 54504575 1318 CpG island CpG island 5639
Tssr119870 13 54503762 to 54503769 7 + TSS region transcription start site region 119870
Del(13Simc1-B4galt7)2Dja 13 54503779 to 55610443 1106664 chromosomal deletion deletion, Chr 13, David J Adams 2
Simc1 13 54503779 to 54551290 47511 + protein coding gene SUMO-interacting motifs containing 1
Tssr119871 13 54503786 to 54503800 14 + TSS region transcription start site region 119871
Tssr122610 13 54504309 to 54504326 17 - TSS region transcription start site region 122610
Tssr119872 13 54517504 to 54517508 4 + TSS region transcription start site region 119872
4833439L19Rik 13 54551218 to 54565382 14164 - protein coding gene RIKEN cDNA 4833439L19 gene
Tssr122611 13 54551907 to 54551939 32 - TSS region transcription start site region 122611
Cpgi5640 13 54564663 to 54565548 885 CpG island CpG island 5640
Tssr122612 13 54565299 to 54565362 63 - TSS region transcription start site region 122612
Tssr122613 13 54565368 to 54565386 18 - TSS region transcription start site region 122613
Tssr119873 13 54571020 to 54571069 49 + TSS region transcription start site region 119873
Cpgi5641 13 54574848 to 54575879 1031 CpG island CpG island 5641
Tssr119874 13 54575008 to 54575017 9 + TSS region transcription start site region 119874
Arl10 13 54575015 to 54581128 6113 + protein coding gene ADP-ribosylation factor-like 10
Tssr119875 13 54575020 to 54575093 73 + TSS region transcription start site region 119875
Tssr119876 13 54577902 to 54577918 16 + TSS region transcription start site region 119876
Gm24195 13 54578113 to 54578249 136 + miRNA gene predicted gene, 24195
Tssr119877 13 54581126 to 54581170 44 + TSS region transcription start site region 119877