Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:53372556-54010474

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sptlc1 13 53332748 to 53377397 44649 - protein coding gene serine palmitoyltransferase, long chain base subunit 1
Tssr122581 13 53373778 to 53373785 7 - TSS region transcription start site region 122581
Tssr122582 13 53374307 to 53374319 12 - TSS region transcription start site region 122582
Cpgi5620 13 53377045 to 53377579 534 CpG island CpG island 5620
Tssr122583 13 53377355 to 53377373 18 - TSS region transcription start site region 122583
Tssr119832 13 53393589 to 53393678 89 + TSS region transcription start site region 119832
Tssr119833 13 53393682 to 53393694 12 + TSS region transcription start site region 119833
Gm2762 13 53393689 to 53455630 61941 + lincRNA gene predicted gene 2762
1700058M13Rik 13 53403949 to 53414829 10880 lncRNA gene RIKEN cDNA 1700058M13 gene
Gm43262 13 53403950 to 53414830 10880 - lincRNA gene predicted gene 43262
Tssr122584 13 53414821 to 53414832 11 - TSS region transcription start site region 122584
Gm38564 13 53415943 to 53419345 3402 - protein coding gene predicted gene, 38564
Tssr122585 13 53421644 to 53421662 18 - TSS region transcription start site region 122585
Tssr119834 13 53441907 to 53441912 5 + TSS region transcription start site region 119834
Tssr119835 13 53448251 to 53448257 6 + TSS region transcription start site region 119835
Gm33763 13 53461317 to 53478244 16927 + lncRNA gene predicted gene, 33763
Cpgi5621 13 53461903 to 53462789 886 CpG island CpG island 5621
Cpgi5622 13 53465273 to 53465814 541 CpG island CpG island 5622
Msx2 13 53466881 to 53472780 5899 - protein coding gene msh homeobox 2
Cpgi5623 13 53472121 to 53473156 1035 CpG island CpG island 5623
Tssr122586 13 53472712 to 53472725 13 - TSS region transcription start site region 122586
Tssr122587 13 53472735 to 53472787 52 - TSS region transcription start site region 122587
Tssr122588 13 53472800 to 53472810 10 - TSS region transcription start site region 122588
Tssr122589 13 53472822 to 53472850 28 - TSS region transcription start site region 122589
Cpgi5624 13 53475606 to 53476448 842 CpG island CpG island 5624
Gm40951 13 53478351 to 53481973 3622 + lncRNA gene predicted gene, 40951
Gm33873 13 53482624 to 53505790 23166 + lncRNA gene predicted gene, 33873
Gm40952 13 53501857 to 53504386 2529 - lncRNA gene predicted gene, 40952
Cpgi5625 13 53504744 to 53505143 399 CpG island CpG island 5625
Gm34022 13 53506535 to 53534643 28108 - lincRNA gene predicted gene, 34022
Gm5449 13 53525703 to 53526059 356 + pseudogene predicted pseudogene 5449
Tssr122590 13 53533239 to 53533286 47 - TSS region transcription start site region 122590
9530014B07Rik 13 53635894 to 53639193 3299 - lincRNA gene RIKEN cDNA 9530014B07 gene
Tssr122591 13 53639187 to 53639202 15 - TSS region transcription start site region 122591
Tssr122592 13 53639207 to 53639212 5 - TSS region transcription start site region 122592
Tssr122593 13 53639225 to 53639236 11 - TSS region transcription start site region 122593
Cpgi5626 13 53648441 to 53648669 228 CpG island CpG island 5626
4930555G21Rik 13 53648585 to 53650080 1495 + lincRNA gene RIKEN cDNA 4930555G21 gene
Cpgi5627 13 53670427 to 53670844 417 CpG island CpG island 5627
Gm34278 13 53682556 to 53700474 17918 - lincRNA gene predicted gene, 34278
Gm34332 13 53688767 to 53690351 1584 + lncRNA gene predicted gene, 34332
Gm34439 13 53748391 to 53787724 39333 - lncRNA gene predicted gene, 34439
Gm48548 13 53776627 to 53778973 2346 + lincRNA gene predicted gene, 48548
Cpgi5628 13 53800765 to 53801030 265 CpG island CpG island 5628
Gm40954 13 53839281 to 53850088 10807 - lncRNA gene predicted gene, 40954
Gm18974 13 53888534 to 53889117 583 + pseudogene predicted gene, 18974
E130119H09Rik 13 53912263 to 53915748 3485 - unclassified non-coding RNA gene RIKEN cDNA E130119H09 gene
Tssr122594 13 53915740 to 53915749 9 - TSS region transcription start site region 122594
Gm34557 13 53932983 to 53935283 2300 - lincRNA gene predicted gene, 34557
Gm48550 13 53968944 to 53976666 7722 + lincRNA gene predicted gene, 48550