Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:51552682-51732690

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shc3 13 51431041 to 51567084 136043 - protein coding gene src homology 2 domain-containing transforming protein C3
Cpgi5596 13 51566556 to 51567912 1356 CpG island CpG island 5596
Tssr122504 13 51567750 to 51567773 23 - TSS region transcription start site region 122504
Tssr122505 13 51567780 to 51567836 56 - TSS region transcription start site region 122505
Tssr122506 13 51568052 to 51568094 42 - TSS region transcription start site region 122506
Tssr122507 13 51568301 to 51568333 32 - TSS region transcription start site region 122507
Cpgi5597 13 51568728 to 51569331 603 CpG island CpG island 5597
Tssr122508 13 51569076 to 51569116 40 - TSS region transcription start site region 122508
Tssr122509 13 51569171 to 51569192 21 - TSS region transcription start site region 122509
Tssr122510 13 51569341 to 51569345 4 - TSS region transcription start site region 122510
Tssr122511 13 51569437 to 51569467 30 - TSS region transcription start site region 122511
Cpgi5598 13 51594793 to 51595323 530 CpG island CpG island 5598
Tssr119758 13 51642682 to 51642690 8 + TSS region transcription start site region 119758
Cpgi5599 13 51644787 to 51645842 1055 CpG island CpG island 5599
Tssr122512 13 51644894 to 51644899 5 - TSS region transcription start site region 122512
Cks2 13 51645232 to 51650660 5428 + protein coding gene CDC28 protein kinase regulatory subunit 2
Tssr119759 13 51645268 to 51645276 8 + TSS region transcription start site region 119759
Tssr119760 13 51645284 to 51645299 15 + TSS region transcription start site region 119760
Tssr119761 13 51645310 to 51645332 22 + TSS region transcription start site region 119761
Tssr119762 13 51645370 to 51645392 22 + TSS region transcription start site region 119762
Tssr119763 13 51645692 to 51645727 35 + TSS region transcription start site region 119763
Tssr119764 13 51645736 to 51645747 11 + TSS region transcription start site region 119764
Gm22806 13 51648199 to 51648334 135 + snoRNA gene predicted gene, 22806
Cpgi5600 13 51651198 to 51652137 939 CpG island CpG island 5600
Tssr119765 13 51651573 to 51651582 9 + TSS region transcription start site region 119765
Tssr119766 13 51651691 to 51651702 11 + TSS region transcription start site region 119766
Secisbp2 13 51651697 to 51684044 32347 + protein coding gene SECIS binding protein 2
Tssr119767 13 51651709 to 51651746 37 + TSS region transcription start site region 119767
Tssr119768 13 51651761 to 51651777 16 + TSS region transcription start site region 119768
Sema4d 13 51685529 to 51793747 108218 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
Tssr122513 13 51701396 to 51701418 22 - TSS region transcription start site region 122513
Tssr122514 13 51701723 to 51701742 19 - TSS region transcription start site region 122514
Tssr122515 13 51701900 to 51701926 26 - TSS region transcription start site region 122515
Tssr122516 13 51702116 to 51702141 25 - TSS region transcription start site region 122516
Tssr122517 13 51702174 to 51702194 20 - TSS region transcription start site region 122517
Tssr122518 13 51703110 to 51703131 21 - TSS region transcription start site region 122518
Tssr122519 13 51703149 to 51703162 13 - TSS region transcription start site region 122519
Tssr122520 13 51703401 to 51703422 21 - TSS region transcription start site region 122520
Tssr119769 13 51709955 to 51709985 30 + TSS region transcription start site region 119769
Tssr122521 13 51714816 to 51714846 30 - TSS region transcription start site region 122521
Tssr122522 13 51717813 to 51717833 20 - TSS region transcription start site region 122522
Tssr122523 13 51729082 to 51729099 17 - TSS region transcription start site region 122523