Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:49747178-52567182

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234 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm19334 13 49750462 to 49752536 2074 + protein coding gene predicted gene, 19334
Cpgi5588 13 49762431 to 49762684 253 CpG island CpG island 5588
Tssr119736 13 49762472 to 49762487 15 + TSS region transcription start site region 119736
Gm270 13 49764328 to 49765303 975 + protein coding gene predicted gene 270
Tssr119737 13 49766330 to 49766346 16 + TSS region transcription start site region 119737
Gm30302 13 49784742 to 49790401 5659 - protein coding gene predicted gene, 30302
Gm47977 13 49784981 to 49787292 2311 + antisense lncRNA gene predicted gene, 47977
Tssr122492 13 49790241 to 49790244 3 - TSS region transcription start site region 122492
Gm7251 13 49804944 to 49805952 1008 - pseudogene predicted pseudogene 7251
Tssr119738 13 49814741 to 49814753 12 + TSS region transcription start site region 119738
Tssr119739 13 49818590 to 49818594 4 + TSS region transcription start site region 119739
Gm272 13 49820728 to 49821646 918 + protein coding gene predicted gene 272
D13Mit278 13 49831810 to 49831923 113 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 278
Gm8672 13 49861669 to 49864129 2460 - protein coding gene predicted gene 8672
D13Mit1000 13 49880002 to 49880119 117 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1000
Gm19011 13 49882957 to 49883764 807 + pseudogene predicted gene, 19011
Gm48009 13 49890423 to 49892868 2445 - pseudogene predicted gene, 48009
Gm8674 13 49898842 to 49902468 3626 - protein coding gene predicted gene 8674
Tssr122493 13 49904627 to 49904630 3 - TSS region transcription start site region 122493
Gm10784 13 49945096 to 49945333 237 - pseudogene predicted pseudogene 10784
Gm48051 13 49970001 to 49974260 4259 + lincRNA gene predicted gene, 48051
Tssr4067 13 49970006 to 49970024 18 + TSS region transcription start site region 4067
Gm17611 13 49976258 to 49977074 816 - protein coding gene predicted gene, 17611
Gm6554 13 50000347 to 50002258 1911 - pseudogene predicted gene 6554
Gm30520 13 50008262 to 50052848 44586 + lncRNA gene predicted gene, 30520
Gm48052 13 50049004 to 50051005 2001 - pseudogene predicted gene, 48052
LOC667541 13 50056441 to 50058385 1944 - pseudogene hypothetical LOC667541
Gm8700 13 50099026 to 50104045 5019 - protein coding gene predicted gene 8700
Gm24300 13 50118006 to 50118114 108 + miRNA gene predicted gene, 24300
Gm48054 13 50133670 to 50134510 840 - pseudogene predicted gene, 48054
4933433N18Rik 13 50137069 to 50146670 9601 + lincRNA gene RIKEN cDNA 4933433N18 gene
Gm19470 13 50161821 to 50163398 1577 - protein coding gene predicted gene, 19470
Gm47412 13 50165573 to 50167849 2276 - pseudogene predicted gene, 47412
Gm19484 13 50195183 to 50198131 2948 + pseudogene predicted gene, 19484
Gm38453 13 50197941 to 50201627 3686 + pseudogene predicted gene, 38453
Gm2645 13 50207542 to 50208088 546 - pseudogene predicted gene 2645
Gm31217 13 50218358 to 50228101 9743 + lncRNA gene predicted gene, 31217
Gm29769 13 50235111 to 50238756 3645 - pseudogene predicted gene, 29769
Gm47413 13 50241709 to 50241957 248 + pseudogene predicted gene, 47413
Gm906 13 50245181 to 50250308 5127 - protein coding gene predicted gene 906
2310081J21Rik 13 50261815 to 50262869 1054 + lncRNA gene RIKEN cDNA 2310081J21 gene
Gm24017 13 50262394 to 50262502 108 + miRNA gene predicted gene, 24017
Gm31126 13 50267976 to 50276670 8694 + lincRNA gene predicted gene, 31126
D13Mit246a 13 50289804 to 50289987 183 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 246a
Gm9699 13 50291081 to 50293188 2107 - pseudogene predicted gene 9699
Gm46384 13 50300800 to 50302602 1802 - pseudogene predicted gene, 46384
Gm46385 13 50300899 to 50342216 41317 - pseudogene predicted gene, 46385
Gm8739 13 50343611 to 50344161 550 - antisense lncRNA gene predicted gene 8739
Gm19536 13 50399335 to 50400423 1088 - protein coding gene predicted gene, 19536
Gm8742 13 50412062 to 50414576 2514 - pseudogene predicted gene 8742
Cpgi5589 13 50417714 to 50418214 500 CpG island CpG island 5589
Tssr119740 13 50417856 to 50417872 16 + TSS region transcription start site region 119740
Fbxw17 13 50417864 to 50433780 15916 + protein coding gene F-box and WD-40 domain protein 17
Tssr119741 13 50417874 to 50417912 38 + TSS region transcription start site region 119741
Tssr119742 13 50417925 to 50417932 7 + TSS region transcription start site region 119742
Tssr119743 13 50422609 to 50422616 7 + TSS region transcription start site region 119743
Gm47429 13 50443408 to 50443912 504 - protein coding gene predicted gene, 47429
Tssr122494 13 50443850 to 50443860 10 - TSS region transcription start site region 122494
Tssr122495 13 50443867 to 50443894 27 - TSS region transcription start site region 122495
Tssr122496 13 50443910 to 50443914 4 - TSS region transcription start site region 122496
Gm40946 13 50448942 to 50465268 16326 - lncRNA gene predicted gene, 40946
Cpgi5590 13 50464843 to 50465103 260 CpG island CpG island 5590
Nutm2 13 50467307 to 50475355 8048 + protein coding gene NUT family member 2
Gm7259 13 50490585 to 50491435 850 + pseudogene predicted gene 7259
Gm31835 13 50516647 to 50539528 22881 - lncRNA gene predicted gene, 31835
Mir683-1 13 50544626 to 50544734 108 - miRNA gene microRNA 683-1
Gm20789 13 50561473 to 50570876 9403 + pseudogene predicted gene, 20789
D13Mit246b 13 50572643 to 50572816 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 246b
Gm31712 13 50572802 to 50595600 22798 - lncRNA gene predicted gene, 31712
Tssr122497 13 50595494 to 50595531 37 - TSS region transcription start site region 122497
Mir683-2 13 50600972 to 50601080 108 - miRNA gene microRNA 683-2
Gm31890 13 50610205 to 50613242 3037 - pseudogene predicted gene, 31890
Gm29777 13 50610733 to 50618160 7427 - pseudogene predicted gene, 29777
Gm904 13 50643228 to 50645838 2610 + protein coding gene predicted gene 904
Gm19663 13 50647276 to 50649746 2470 + pseudogene predicted gene, 19663
Gm32038 13 50651705 to 50673401 21696 - lncRNA gene predicted gene, 32038
Gm23952 13 50679537 to 50679645 108 - miRNA gene predicted gene, 23952
Gm8765 13 50698312 to 50703435 5123 + protein coding gene predicted gene 8765
4930518P08Rik 13 50753393 to 50765248 11855 - lincRNA gene RIKEN cDNA 4930518P08 gene
Gm17761 13 50758754 to 50759668 914 + pseudogene predicted gene, 17761
Gm2654 13 50786144 to 50787735 1591 + pseudogene predicted gene 2654
Gm40947 13 50854923 to 50878273 23350 - lncRNA gene predicted gene, 40947
Gm19009 13 50859346 to 50860156 810 - pseudogene predicted gene, 19009
Gm8777 13 50885270 to 50891424 6154 + protein coding gene predicted gene 8777
Tssr4068 13 50885852 to 50885859 7 + TSS region transcription start site region 4068
1700048B10Rik 13 50913817 to 50934152 20335 - lncRNA gene RIKEN cDNA 1700048B10 gene
Tssr122498 13 50934147 to 50934186 39 - TSS region transcription start site region 122498
Gm9702 13 50936043 to 50937246 1203 - pseudogene predicted gene 9702
Tssr119744 13 50950180 to 50950189 9 + TSS region transcription start site region 119744
Gm8779 13 50950222 to 50951017 795 + pseudogene predicted gene 8779
Gm32613 13 50981488 to 50991416 9928 - lncRNA gene predicted gene, 32613
Tssr122499 13 50991327 to 50991337 10 - TSS region transcription start site region 122499
Tssr122500 13 50991355 to 50991376 21 - TSS region transcription start site region 122500
D13Mit166 13 51013133 to 51013330 197 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 166
Gm22199 13 51014086 to 51014211 125 + unclassified non-coding RNA gene predicted gene, 22199
Tssr122501 13 51015179 to 51015184 5 - TSS region transcription start site region 122501
Tssr122502 13 51026410 to 51026454 44 - TSS region transcription start site region 122502
9430083A17Rik 13 51097738 to 51100727 2989 - lncRNA gene RIKEN cDNA 9430083A17 gene
Cpgi5591 13 51099971 to 51101770 1799 CpG island CpG island 5591
Tssr119745 13 51100473 to 51100492 19 + TSS region transcription start site region 119745
Tssr119746 13 51100494 to 51100515 21 + TSS region transcription start site region 119746
Tssr119747 13 51100781 to 51100799 18 + TSS region transcription start site region 119747
Tssr119748 13 51100810 to 51100933 123 + TSS region transcription start site region 119748
Spin1 13 51100880 to 51152546 51666 + protein coding gene spindlin 1
Tssr119749 13 51101203 to 51101231 28 + TSS region transcription start site region 119749
Tssr122503 13 51101509 to 51101530 21 - TSS region transcription start site region 122503
Tssr119750 13 51132279 to 51132283 4 + TSS region transcription start site region 119750
Tssr119751 13 51137681 to 51137685 4 + TSS region transcription start site region 119751
Tssr119752 13 51157178 to 51157182 4 + TSS region transcription start site region 119752
Tssr119753 13 51166008 to 51166019 11 + TSS region transcription start site region 119753
Cpgi5592 13 51170752 to 51171933 1181 CpG island CpG island 5592
Nxnl2 13 51171022 to 51175188 4166 + protein coding gene nucleoredoxin-like 2
Tssr119754 13 51171234 to 51171258 24 + TSS region transcription start site region 119754
Tssr119755 13 51171295 to 51171305 10 + TSS region transcription start site region 119755
Gm44341 13 51202698 to 51202835 137 + miRNA gene predicted gene, 44341
Hist1h2al 13 51202727 to 51203065 338 - pseudogene histone cluster 1, H2al
Tssr119756 13 51203208 to 51203213 5 + TSS region transcription start site region 119756
Gm29787 13 51205263 to 51206111 848 - pseudogene predicted gene, 29787
Gm46414 13 51208641 to 51372636 163995 + lncRNA gene predicted gene, 46414
Cpgi5593 13 51229279 to 51229687 408 CpG island CpG island 5593
Gm6056 13 51338921 to 51339707 786 + pseudogene predicted gene 6056
Gm47554 13 51344996 to 51345598 602 + pseudogene predicted gene, 47554
Gm32834 13 51378153 to 51418686 40533 - lincRNA gene predicted gene, 32834
D13Mit156.1 13 51395069 to 51395242 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 156.1
D13Mit156 13 51395203 to 51395331 128 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 156
Cpgi5594 13 51408488 to 51409079 591 CpG island CpG island 5594
S1pr3 13 51408639 to 51422797 14158 + protein coding gene sphingosine-1-phosphate receptor 3
Tssr119757 13 51408756 to 51408781 25 + TSS region transcription start site region 119757
Cpgi5595 13 51419394 to 51419581 187 CpG island CpG island 5595
Shc3 13 51431041 to 51567084 136043 - protein coding gene src homology 2 domain-containing transforming protein C3
D13Mit247 13 51476607 to 51476720 113 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 247
Cpgi5596 13 51566556 to 51567912 1356 CpG island CpG island 5596
Tssr122504 13 51567750 to 51567773 23 - TSS region transcription start site region 122504
Tssr122505 13 51567780 to 51567836 56 - TSS region transcription start site region 122505
Tssr122506 13 51568052 to 51568094 42 - TSS region transcription start site region 122506
Tssr122507 13 51568301 to 51568333 32 - TSS region transcription start site region 122507
Cpgi5597 13 51568728 to 51569331 603 CpG island CpG island 5597
Tssr122508 13 51569076 to 51569116 40 - TSS region transcription start site region 122508
Tssr122509 13 51569171 to 51569192 21 - TSS region transcription start site region 122509
Tssr122510 13 51569341 to 51569345 4 - TSS region transcription start site region 122510
Tssr122511 13 51569437 to 51569467 30 - TSS region transcription start site region 122511
Cpgi5598 13 51594793 to 51595323 530 CpG island CpG island 5598
Tssr119758 13 51642682 to 51642690 8 + TSS region transcription start site region 119758
Cpgi5599 13 51644787 to 51645842 1055 CpG island CpG island 5599
Tssr122512 13 51644894 to 51644899 5 - TSS region transcription start site region 122512
Cks2 13 51645232 to 51650660 5428 + protein coding gene CDC28 protein kinase regulatory subunit 2
Tssr119759 13 51645268 to 51645276 8 + TSS region transcription start site region 119759
Tssr119760 13 51645284 to 51645299 15 + TSS region transcription start site region 119760
Tssr119761 13 51645310 to 51645332 22 + TSS region transcription start site region 119761
Tssr119762 13 51645370 to 51645392 22 + TSS region transcription start site region 119762
Tssr119763 13 51645692 to 51645727 35 + TSS region transcription start site region 119763
Tssr119764 13 51645736 to 51645747 11 + TSS region transcription start site region 119764
Gm22806 13 51648199 to 51648334 135 + snoRNA gene predicted gene, 22806
Cpgi5600 13 51651198 to 51652137 939 CpG island CpG island 5600
Tssr119765 13 51651573 to 51651582 9 + TSS region transcription start site region 119765
Tssr119766 13 51651691 to 51651702 11 + TSS region transcription start site region 119766
Secisbp2 13 51651697 to 51684044 32347 + protein coding gene SECIS binding protein 2
Tssr119767 13 51651709 to 51651746 37 + TSS region transcription start site region 119767
Tssr119768 13 51651761 to 51651777 16 + TSS region transcription start site region 119768
Sema4d 13 51685529 to 51793747 108218 - protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
Tssr122513 13 51701396 to 51701418 22 - TSS region transcription start site region 122513
Tssr122514 13 51701723 to 51701742 19 - TSS region transcription start site region 122514
Tssr122515 13 51701900 to 51701926 26 - TSS region transcription start site region 122515
Tssr122516 13 51702116 to 51702141 25 - TSS region transcription start site region 122516
Tssr122517 13 51702174 to 51702194 20 - TSS region transcription start site region 122517
Tssr122518 13 51703110 to 51703131 21 - TSS region transcription start site region 122518
Tssr122519 13 51703149 to 51703162 13 - TSS region transcription start site region 122519
Tssr122520 13 51703401 to 51703422 21 - TSS region transcription start site region 122520
Tssr119769 13 51709955 to 51709985 30 + TSS region transcription start site region 119769
Tssr122521 13 51714816 to 51714846 30 - TSS region transcription start site region 122521
Tssr122522 13 51717813 to 51717833 20 - TSS region transcription start site region 122522
Tssr122523 13 51729082 to 51729099 17 - TSS region transcription start site region 122523
Tssr122524 13 51733709 to 51733756 47 - TSS region transcription start site region 122524
Tssr122525 13 51734615 to 51734626 11 - TSS region transcription start site region 122525
Tssr122526 13 51734644 to 51734667 23 - TSS region transcription start site region 122526
Tssr122527 13 51734683 to 51734693 10 - TSS region transcription start site region 122527
Tssr122528 13 51734695 to 51734747 52 - TSS region transcription start site region 122528
Tssr122529 13 51739772 to 51739781 9 - TSS region transcription start site region 122529
Tssr122530 13 51739788 to 51739813 25 - TSS region transcription start site region 122530
Tssr122531 13 51748775 to 51748821 46 - TSS region transcription start site region 122531
Tssr122532 13 51756605 to 51756636 31 - TSS region transcription start site region 122532
Tssr122533 13 51756662 to 51756691 29 - TSS region transcription start site region 122533
Tssr122534 13 51763384 to 51763398 14 - TSS region transcription start site region 122534
Tssr122535 13 51763409 to 51763427 18 - TSS region transcription start site region 122535
Tssr122536 13 51763430 to 51763478 48 - TSS region transcription start site region 122536
Gm23566 13 51765294 to 51765401 107 + miRNA gene predicted gene, 23566
Tssr122537 13 51767563 to 51767568 5 - TSS region transcription start site region 122537
D13Mit139 13 51767907 to 51768045 138 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 139
Sluc23 13 51767907 to 51768045 138 QTL susceptibility to lung cancer 23
Tssr122538 13 51777119 to 51777141 22 - TSS region transcription start site region 122538
Tssr122539 13 51788406 to 51788411 5 - TSS region transcription start site region 122539
Cpgi5601 13 51792737 to 51793941 1204 CpG island CpG island 5601
Tssr122540 13 51793533 to 51793542 9 - TSS region transcription start site region 122540
Tssr122541 13 51793615 to 51793624 9 - TSS region transcription start site region 122541
Tssr122542 13 51793650 to 51793713 63 - TSS region transcription start site region 122542
Tssr122543 13 51798533 to 51798558 25 - TSS region transcription start site region 122543
Tssr119770 13 51800232 to 51800245 13 + TSS region transcription start site region 119770
Tssr122544 13 51801149 to 51801154 5 - TSS region transcription start site region 122544
Cpgi5602 13 51806437 to 51806635 198 CpG island CpG island 5602
Cpgi5603 13 51832270 to 51832461 191 CpG island CpG island 5603