Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:47194474-48494592

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf144b 13 47122720 to 47247991 125271 + protein coding gene ring finger protein 144B
Lfibq9 13 47129920 to 47675890 545970 QTL liver fibrosis QTL 9
Tssr119639 13 47195812 to 47195814 2 + TSS region transcription start site region 119639
Tssr119640 13 47201518 to 47201528 10 + TSS region transcription start site region 119640
Tssr119641 13 47201597 to 47201612 15 + TSS region transcription start site region 119641
Tssr119642 13 47201635 to 47201646 11 + TSS region transcription start site region 119642
Tssr119643 13 47201661 to 47201673 12 + TSS region transcription start site region 119643
Tssr119644 13 47207440 to 47207468 28 + TSS region transcription start site region 119644
Tssr119645 13 47209023 to 47209027 4 + TSS region transcription start site region 119645
Tssr119646 13 47210844 to 47210848 4 + TSS region transcription start site region 119646
Tssr119647 13 47211350 to 47211353 3 + TSS region transcription start site region 119647
Gm40934 13 47219526 to 47224544 5018 - lncRNA gene predicted gene, 40934
Tssr119648 13 47225560 to 47225566 6 + TSS region transcription start site region 119648
Tssr119649 13 47228498 to 47228508 10 + TSS region transcription start site region 119649
Tssr119650 13 47239988 to 47239993 5 + TSS region transcription start site region 119650
Tssr119651 13 47246936 to 47246951 15 + TSS region transcription start site region 119651
Tssr119652 13 47246981 to 47246990 9 + TSS region transcription start site region 119652
Tssr119653 13 47247621 to 47247627 6 + TSS region transcription start site region 119653
Tssr122381 13 47274493 to 47274500 7 - TSS region transcription start site region 122381
Gm48612 13 47335251 to 47340939 5688 - lincRNA gene predicted gene, 48612
AA517650 13 47359428 to 47359700 272 unclassified gene expressed sequence AA517650
Gm35733 13 47438680 to 47439339 659 + lincRNA gene predicted gene, 35733
Gm40936 13 47461264 to 47464280 3016 + lncRNA gene predicted gene, 40936
Cpgi5555 13 47469024 to 47469176 152 CpG island CpG island 5555
D13Dcr10 13 47582044 to 47582140 96 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 10
D13Mit90 13 47638768 to 47639023 255 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 90
4930471G24Rik 13 47667550 to 47668392 842 + lincRNA gene RIKEN cDNA 4930471G24 gene
D13Mit94 13 47715648 to 47715795 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 94
Gm35928 13 47784231 to 47789591 5360 - lncRNA gene predicted gene, 35928
Chol18 13 47815991 to 47815991 0 QTL cholesterol 18
Chol15 13 47815991 to 47815991 0 QTL cholesterol 15
Gm35991 13 47843815 to 47851943 8128 + lncRNA gene predicted gene, 35991
D13Mit309 13 47844474 to 47844592 118 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 309
D13Mit309.2 13 47844572 to 47844760 188 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 309.2
D13Mit199 13 47846576 to 47846724 148 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 199
Gm40938 13 47902558 to 47948474 45916 - lncRNA gene predicted gene, 40938
G630093K05Rik 13 47910435 to 47934301 23866 + lincRNA gene RIKEN cDNA G630093K05 gene
4931429P17Rik 13 47960330 to 48018608 58278 - lincRNA gene RIKEN cDNA 4931429P17 gene
Twq4 13 47975634 to 47975634 0 QTL testis weight QTL 4
Tssr122382 13 47992392 to 47992406 14 - TSS region transcription start site region 122382
Gm36101 13 48031773 to 48042471 10698 + lincRNA gene predicted gene, 36101
Tssr119654 13 48031839 to 48031856 17 + TSS region transcription start site region 119654
A330033J07Rik 13 48044231 to 48262623 218392 - antisense lncRNA gene RIKEN cDNA A330033J07 gene
Cpgi5556 13 48046412 to 48046608 196 CpG island CpG island 5556
Cpgi5557 13 48082389 to 48082630 241 CpG island CpG island 5557
Cpgi5558 13 48086771 to 48087019 248 CpG island CpG island 5558
Gm36346 13 48107897 to 48111641 3744 - lincRNA gene predicted gene, 36346
Gm36183 13 48227702 to 48241412 13710 + lncRNA gene predicted gene, 36183
Cpgi5559 13 48227722 to 48228149 427 CpG island CpG island 5559
Gm49291 13 48239054 to 48262591 23537 - lincRNA gene predicted gene, 49291
Gm40939 13 48242373 to 48253779 11406 + lncRNA gene predicted gene, 40939
Cpgi5560 13 48260595 to 48262915 2320 CpG island CpG island 5560
Tssr119655 13 48261081 to 48261091 10 + TSS region transcription start site region 119655
Tssr119656 13 48261106 to 48261123 17 + TSS region transcription start site region 119656
Tssr119657 13 48261161 to 48261168 7 + TSS region transcription start site region 119657
Tssr119658 13 48261194 to 48261199 5 + TSS region transcription start site region 119658
Id4 13 48261427 to 48264036 2609 + protein coding gene inhibitor of DNA binding 4
A330048O09Rik 13 48272418 to 48273884 1466 - lincRNA gene RIKEN cDNA A330048O09 gene
Tssr122383 13 48273865 to 48273909 44 - TSS region transcription start site region 122383
Gm8588 13 48312670 to 48314251 1581 + pseudogene predicted gene 8588
Tssr122384 13 48314606 to 48314616 10 - TSS region transcription start site region 122384
Gm48648 13 48359459 to 48408512 49053 - lincRNA gene predicted gene, 48648
Gm40940 13 48439665 to 48446672 7007 - lncRNA gene predicted gene, 40940
Gm40941 13 48465810 to 48477602 11792 - lncRNA gene predicted gene, 40941
Zfp169 13 48487647 to 48513451 25804 - protein coding gene zinc finger protein 169
Cpgi5561 13 48490421 to 48490900 479 CpG island CpG island 5561
Tssr119659 13 48491006 to 48491011 5 + TSS region transcription start site region 119659
Tssr119660 13 48491032 to 48491047 15 + TSS region transcription start site region 119660
Tssr119661 13 48491060 to 48491065 5 + TSS region transcription start site region 119661
Gm36402 13 48491403 to 48505499 14096 + lncRNA gene predicted gene, 36402