Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:45947852-47697956

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184 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atxn1 13 45549755 to 45965008 415253 - protein coding gene ataxin 1
Cpgi5536 13 45963244 to 45966303 3059 CpG island CpG island 5536
Tssr122339 13 45963695 to 45963719 24 - TSS region transcription start site region 122339
Tssr122340 13 45964964 to 45965001 37 - TSS region transcription start site region 122340
Tssr119584 13 45965211 to 45965231 20 + TSS region transcription start site region 119584
5033430I15Rik 13 45965253 to 45966508 1255 + lincRNA gene RIKEN cDNA 5033430I15 gene
Tssr119585 13 45965455 to 45965476 21 + TSS region transcription start site region 119585
Tssr122341 13 45966279 to 45966325 46 - TSS region transcription start site region 122341
Tssr122342 13 45971304 to 45971313 9 - TSS region transcription start site region 122342
Gm34991 13 46019856 to 46037769 17913 + lncRNA gene predicted gene, 34991
Cpgi5537 13 46043157 to 46043388 231 CpG island CpG island 5537
Tssr119586 13 46060594 to 46060633 39 + TSS region transcription start site region 119586
Gm45949 13 46061296 to 46068758 7462 + lincRNA gene predicted gene, 45949
D13Mit155 13 46081738 to 46081861 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 155
Gm10113 13 46175428 to 46191046 15618 - lincRNA gene predicted gene 10113
Tssr119587 13 46273700 to 46273712 12 + TSS region transcription start site region 119587
Stmnd1 13 46273721 to 46300115 26394 + protein coding gene stathmin domain containing 1
D13Mit308 13 46297110 to 46297207 97 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 308
Tssr119588 13 46340227 to 46340244 17 + TSS region transcription start site region 119588
Cpgi5538 13 46418092 to 46419558 1466 CpG island CpG island 5538
Tssr119589 13 46418212 to 46418238 26 + TSS region transcription start site region 119589
Tssr119590 13 46418266 to 46418316 50 + TSS region transcription start site region 119590
Rbm24 13 46418434 to 46431095 12661 + protein coding gene RNA binding motif protein 24
Tssr119591 13 46418468 to 46418510 42 + TSS region transcription start site region 119591
Tssr119592 13 46419020 to 46419037 17 + TSS region transcription start site region 119592
Tssr119593 13 46420137 to 46420141 4 + TSS region transcription start site region 119593
Tssr119594 13 46420530 to 46420541 11 + TSS region transcription start site region 119594
Tssr119595 13 46429622 to 46429633 11 + TSS region transcription start site region 119595
Tssr119596 13 46430685 to 46430689 4 + TSS region transcription start site region 119596
Gm35110 13 46473549 to 46496461 22912 - bidirectional promoter lncRNA gene predicted gene, 35110
Cpgi5539 13 46501783 to 46502633 850 CpG island CpG island 5539
Tssr119597 13 46501859 to 46501885 26 + TSS region transcription start site region 119597
Tssr119598 13 46501898 to 46501916 18 + TSS region transcription start site region 119598
Cap2 13 46501903 to 46650281 148378 + protein coding gene CAP, adenylate cyclase-associated protein, 2 (yeast)
Tssr119599 13 46502037 to 46502048 11 + TSS region transcription start site region 119599
Tssr119600 13 46502049 to 46502107 58 + TSS region transcription start site region 119600
Tssr119601 13 46502113 to 46502140 27 + TSS region transcription start site region 119601
Tssr119602 13 46502141 to 46502187 46 + TSS region transcription start site region 119602
Tssr122343 13 46502787 to 46502794 7 - TSS region transcription start site region 122343
Tssr119603 13 46502889 to 46502914 25 + TSS region transcription start site region 119603
D13Mit181 13 46508401 to 46508536 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 181
Gm24915 13 46518684 to 46518761 77 + rRNA gene predicted gene, 24915
Gm47523 13 46605327 to 46619780 14453 - antisense lncRNA gene predicted gene, 47523
Tssr119604 13 46609544 to 46609574 30 + TSS region transcription start site region 119604
Cpgi5540 13 46609631 to 46609857 226 CpG island CpG island 5540
Tssr119605 13 46609792 to 46609801 9 + TSS region transcription start site region 119605
Cpgi5541 13 46619729 to 46619932 203 CpG island CpG island 5541
Tssr119606 13 46638226 to 46638230 4 + TSS region transcription start site region 119606
Cpgi5542 13 46669144 to 46670494 1350 CpG island CpG island 5542
Tssr119607 13 46669445 to 46669501 56 + TSS region transcription start site region 119607
Tssr4059 13 46669510 to 46669515 5 + TSS region transcription start site region 4059
Tssr119608 13 46669517 to 46669545 28 + TSS region transcription start site region 119608
Fam8a1 13 46669522 to 46678056 8534 + protein coding gene family with sequence similarity 8, member A1
Tssr119609 13 46669571 to 46669582 11 + TSS region transcription start site region 119609
Nup153 13 46679902 to 46727849 47947 - protein coding gene nucleoporin 153
Tssr122344 13 46696851 to 46696898 47 - TSS region transcription start site region 122344
Gm46412 13 46720557 to 46737102 16545 + lncRNA gene predicted gene, 46412
Tssr119610 13 46725260 to 46725272 12 + TSS region transcription start site region 119610
Tssr119611 13 46725446 to 46725471 25 + TSS region transcription start site region 119611
Tssr122345 13 46726607 to 46726615 8 - TSS region transcription start site region 122345
Cpgi5543 13 46726651 to 46728382 1731 CpG island CpG island 5543
Tssr122346 13 46727054 to 46727057 3 - TSS region transcription start site region 122346
Tssr122347 13 46727563 to 46727588 25 - TSS region transcription start site region 122347
Tssr122348 13 46727589 to 46727616 27 - TSS region transcription start site region 122348
Tssr122349 13 46727632 to 46727649 17 - TSS region transcription start site region 122349
Tssr122350 13 46727654 to 46727668 14 - TSS region transcription start site region 122350
Tssr122351 13 46727670 to 46727683 13 - TSS region transcription start site region 122351
Tssr122352 13 46727795 to 46727862 67 - TSS region transcription start site region 122352
Tssr122353 13 46727912 to 46727926 14 - TSS region transcription start site region 122353
Tssr122354 13 46727932 to 46728005 73 - TSS region transcription start site region 122354
Tssr4060 13 46728007 to 46728045 38 - TSS region transcription start site region 4060
Tssr119612 13 46736054 to 46736057 3 + TSS region transcription start site region 119612
Tssr119613 13 46736103 to 46736138 35 + TSS region transcription start site region 119613
Tssr122355 13 46736886 to 46736925 39 - TSS region transcription start site region 122355
Kif13a 13 46749087 to 46929867 180780 - protein coding gene kinesin family member 13A
Cpgi5544 13 46752374 to 46752686 312 CpG island CpG island 5544
Gm24620 13 46767520 to 46767649 129 - snoRNA gene predicted gene, 24620
Cpgi5545 13 46786516 to 46786789 273 CpG island CpG island 5545
Cpgi5546 13 46798619 to 46799071 452 CpG island CpG island 5546
D130012G24Rik 13 46804665 to 46808330 3665 unclassified gene RIKEN cDNA D130012G24 gene
Tssr119614 13 46810326 to 46810363 37 + TSS region transcription start site region 119614
D13Mit91 13 46822852 to 46822956 104 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 91
D13Mit92 13 46850245 to 46850414 169 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 92
Gm48250 13 46881027 to 46884898 3871 + antisense lncRNA gene predicted gene, 48250
Gm22960 13 46902589 to 46902692 103 + snRNA gene predicted gene, 22960
Cpgi5547 13 46929003 to 46931055 2052 CpG island CpG island 5547
Tssr122356 13 46929724 to 46929800 76 - TSS region transcription start site region 122356
Tssr122357 13 46929802 to 46929829 27 - TSS region transcription start site region 122357
Tssr119615 13 46929850 to 46929873 23 + TSS region transcription start site region 119615
Tssr122358 13 46930206 to 46930217 11 - TSS region transcription start site region 122358
Tssr119616 13 46944821 to 46944856 35 + TSS region transcription start site region 119616
Gm48325 13 46945190 to 46945693 503 - pseudogene predicted gene, 48325
Tssr119617 13 46966669 to 46966679 10 + TSS region transcription start site region 119617
Tssr4061 13 46968463 to 46968498 35 + TSS region transcription start site region 4061
2010001K21Rik 13 46979908 to 47011195 31287 + unclassified non-coding RNA gene RIKEN cDNA 2010001K21 gene
Gm24769 13 46980720 to 46980848 128 + snoRNA gene predicted gene, 24769
Tssr119618 13 46986437 to 46986464 27 + TSS region transcription start site region 119618
Tssr119619 13 47000105 to 47000131 26 + TSS region transcription start site region 119619
Gm5790 13 47009533 to 47010945 1412 - pseudogene predicted gene 5790
Cpgi5548 13 47010396 to 47011105 709 CpG island CpG island 5548
Tssr122359 13 47010764 to 47010777 13 - TSS region transcription start site region 122359
Tssr122360 13 47011037 to 47011061 24 - TSS region transcription start site region 122360
Nhlrc1 13 47012557 to 47014850 2293 - protein coding gene NHL repeat containing 1
Cpgi5549 13 47013843 to 47015128 1285 CpG island CpG island 5549
Tssr122361 13 47014814 to 47014863 49 - TSS region transcription start site region 122361
Tpmt 13 47021987 to 47043338 21351 - protein coding gene thiopurine methyltransferase
Gm18807 13 47024346 to 47024986 640 + pseudogene predicted gene, 18807
Tssr122362 13 47043116 to 47043186 70 - TSS region transcription start site region 122362
Cpgi5550 13 47043132 to 47044735 1603 CpG island CpG island 5550
Kdm1b 13 47043499 to 47085279 41780 + protein coding gene lysine (K)-specific demethylase 1B
Tssr119620 13 47043527 to 47043591 64 + TSS region transcription start site region 119620
Tssr119621 13 47043881 to 47043905 24 + TSS region transcription start site region 119621
Tssr119622 13 47066392 to 47066401 9 + TSS region transcription start site region 119622
Tssr119623 13 47066431 to 47066442 11 + TSS region transcription start site region 119623
Tssr119624 13 47066448 to 47066463 15 + TSS region transcription start site region 119624
Dek 13 47084775 to 47106201 21426 - protein coding gene DEK oncogene (DNA binding)
Tssr122363 13 47098241 to 47098276 35 - TSS region transcription start site region 122363
Tssr122364 13 47099372 to 47099387 15 - TSS region transcription start site region 122364
Tssr122365 13 47099397 to 47099434 37 - TSS region transcription start site region 122365
Tssr122366 13 47100205 to 47100216 11 - TSS region transcription start site region 122366
Tssr122367 13 47100219 to 47100253 34 - TSS region transcription start site region 122367
Tssr122368 13 47100268 to 47100273 5 - TSS region transcription start site region 122368
Tssr119625 13 47102006 to 47102054 48 + TSS region transcription start site region 119625
Cpgi5551 13 47105318 to 47106860 1542 CpG island CpG island 5551
Tssr122369 13 47105374 to 47105377 3 - TSS region transcription start site region 122369
Tssr122370 13 47105521 to 47105524 3 - TSS region transcription start site region 122370
Tssr119626 13 47105572 to 47105592 20 + TSS region transcription start site region 119626
Tssr122371 13 47105608 to 47105622 14 - TSS region transcription start site region 122371
Tssr122372 13 47105684 to 47105702 18 - TSS region transcription start site region 122372
Tssr122373 13 47105733 to 47105747 14 - TSS region transcription start site region 122373
Tssr122374 13 47105790 to 47105875 85 - TSS region transcription start site region 122374
Tssr122375 13 47106101 to 47106110 9 - TSS region transcription start site region 122375
Tssr122376 13 47106119 to 47106128 9 - TSS region transcription start site region 122376
Tssr122377 13 47106144 to 47106171 27 - TSS region transcription start site region 122377
Tssr122378 13 47106176 to 47106206 30 - TSS region transcription start site region 122378
Tssr122379 13 47106209 to 47106221 12 - TSS region transcription start site region 122379
Tssr122380 13 47106222 to 47106233 11 - TSS region transcription start site region 122380
Tssr119627 13 47106401 to 47106411 10 + TSS region transcription start site region 119627
Tssr119628 13 47106413 to 47106430 17 + TSS region transcription start site region 119628
1700026N04Rik 13 47106419 to 47109519 3100 + bidirectional promoter lncRNA gene RIKEN cDNA 1700026N04 gene
D13Dcr9 13 47111365 to 47111460 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 9
Gm40935 13 47115684 to 47132081 16397 - lncRNA gene predicted gene, 40935
Cpgi5552 13 47122500 to 47123237 737 CpG island CpG island 5552
Tssr119629 13 47122688 to 47122715 27 + TSS region transcription start site region 119629
Tssr119630 13 47122719 to 47122761 42 + TSS region transcription start site region 119630
Rnf144b 13 47122720 to 47247991 125271 + protein coding gene ring finger protein 144B
Lfibq9 13 47129920 to 47675890 545970 QTL liver fibrosis QTL 9
A930002C04Rik 13 47143942 to 47148670 4728 - antisense lncRNA gene RIKEN cDNA A930002C04 gene
Gm48581 13 47152357 to 47155008 2651 - unclassified gene predicted gene, 48581
Cpgi5553 13 47158784 to 47158992 208 CpG island CpG island 5553
Cpgi5554 13 47193643 to 47194270 627 CpG island CpG island 5554
Tssr119631 13 47193833 to 47193838 5 + TSS region transcription start site region 119631
Tssr119632 13 47193849 to 47193868 19 + TSS region transcription start site region 119632
Tssr119633 13 47193871 to 47193882 11 + TSS region transcription start site region 119633
Tssr119634 13 47193915 to 47193926 11 + TSS region transcription start site region 119634
Tssr119635 13 47193942 to 47194010 68 + TSS region transcription start site region 119635
Tssr119636 13 47194011 to 47194014 3 + TSS region transcription start site region 119636
Tssr119637 13 47194039 to 47194046 7 + TSS region transcription start site region 119637
Tssr119638 13 47194061 to 47194070 9 + TSS region transcription start site region 119638
Tssr119639 13 47195812 to 47195814 2 + TSS region transcription start site region 119639
Tssr119640 13 47201518 to 47201528 10 + TSS region transcription start site region 119640
Tssr119641 13 47201597 to 47201612 15 + TSS region transcription start site region 119641
Tssr119642 13 47201635 to 47201646 11 + TSS region transcription start site region 119642
Tssr119643 13 47201661 to 47201673 12 + TSS region transcription start site region 119643
Tssr119644 13 47207440 to 47207468 28 + TSS region transcription start site region 119644
Tssr119645 13 47209023 to 47209027 4 + TSS region transcription start site region 119645
Tssr119646 13 47210844 to 47210848 4 + TSS region transcription start site region 119646
Tssr119647 13 47211350 to 47211353 3 + TSS region transcription start site region 119647
Gm40934 13 47219526 to 47224544 5018 - lncRNA gene predicted gene, 40934
Tssr119648 13 47225560 to 47225566 6 + TSS region transcription start site region 119648
Tssr119649 13 47228498 to 47228508 10 + TSS region transcription start site region 119649
Tssr119650 13 47239988 to 47239993 5 + TSS region transcription start site region 119650
Tssr119651 13 47246936 to 47246951 15 + TSS region transcription start site region 119651
Tssr119652 13 47246981 to 47246990 9 + TSS region transcription start site region 119652
Tssr119653 13 47247621 to 47247627 6 + TSS region transcription start site region 119653
Tssr122381 13 47274493 to 47274500 7 - TSS region transcription start site region 122381
Gm48612 13 47335251 to 47340939 5688 - lincRNA gene predicted gene, 48612
AA517650 13 47359428 to 47359700 272 unclassified gene expressed sequence AA517650
Gm35733 13 47438680 to 47439339 659 + lincRNA gene predicted gene, 35733
Gm40936 13 47461264 to 47464280 3016 + lncRNA gene predicted gene, 40936
Cpgi5555 13 47469024 to 47469176 152 CpG island CpG island 5555
D13Dcr10 13 47582044 to 47582140 96 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 10
D13Mit90 13 47638768 to 47639023 255 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 90
4930471G24Rik 13 47667550 to 47668392 842 + lincRNA gene RIKEN cDNA 4930471G24 gene