Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:34922135-36402276

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fam217a 13 34909960 to 34924310 14350 - protein coding gene family with sequence similarity 217, member A
Tssr122072 13 34924343 to 34924367 24 - TSS region transcription start site region 122072
Tssr119234 13 34924400 to 34924404 4 + TSS region transcription start site region 119234
4933417A18Rik 13 34924409 to 34955875 31466 + protein coding gene RIKEN cDNA 4933417A18 gene
Tssr119235 13 34924413 to 34924426 13 + TSS region transcription start site region 119235
Tssr119236 13 34924428 to 34924436 8 + TSS region transcription start site region 119236
Tssr119237 13 34924438 to 34924455 17 + TSS region transcription start site region 119237
Gm8245 13 34940643 to 34941629 986 + pseudogene predicted gene 8245
Eci3 13 34946614 to 34963810 17196 - protein coding gene enoyl-Coenzyme A delta isomerase 3
Gm47217 13 34962902 to 34963060 158 - pseudogene predicted gene, 47217
Cpgi5438 13 34963572 to 34963878 306 CpG island CpG island 5438
Tssr122073 13 34963791 to 34963816 25 - TSS region transcription start site region 122073
Tssr122074 13 34963825 to 34963836 11 - TSS region transcription start site region 122074
Gm16984 13 34963949 to 34983318 19369 + antisense lncRNA gene predicted gene, 16984
9430081G06Rik 13 34967434 to 34968619 1185 unclassified gene RIKEN cDNA 9430081G06 gene
D13Mit198 13 34972809 to 34972941 132 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 198
Hypt 13 34972809 to 34972941 132 QTL hypertension
Eci2 13 34977748 to 35027090 49342 - protein coding gene enoyl-Coenzyme A delta isomerase 2
Tssr122075 13 34990838 to 34990879 41 - TSS region transcription start site region 122075
Tssr122076 13 34993196 to 34993219 23 - TSS region transcription start site region 122076
Tssr122077 13 34993228 to 34993246 18 - TSS region transcription start site region 122077
Cpgi5439 13 34993721 to 34994318 597 CpG island CpG island 5439
Tssr122078 13 34993873 to 34993914 41 - TSS region transcription start site region 122078
Tssr122079 13 34994062 to 34994086 24 - TSS region transcription start site region 122079
Tssr122080 13 34994103 to 34994148 45 - TSS region transcription start site region 122080
D13Mit242 13 34998422 to 34998546 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 242
Gm46408 13 35007680 to 35011090 3410 - pseudogene predicted gene, 46408
Tssr122081 13 35027033 to 35027055 22 - TSS region transcription start site region 122081
Tssr122082 13 35027077 to 35027099 22 - TSS region transcription start site region 122082
Gm48626 13 35027354 to 35031946 4592 - lincRNA gene predicted gene, 48626
Gm48629 13 35065461 to 35067620 2159 + lincRNA gene predicted gene, 48629
Gm40910 13 35078564 to 35083396 4832 + lincRNA gene predicted gene, 40910
4930529N20Rik 13 35167147 to 35167824 677 - lincRNA gene RIKEN cDNA 4930529N20 gene
Tssr122083 13 35167803 to 35167806 3 - TSS region transcription start site region 122083
1700011B04Rik 13 35181623 to 35188014 6391 + lncRNA gene RIKEN cDNA 1700011B04 gene
Cpgi5440 13 35189033 to 35189361 328 CpG island CpG island 5440
Tssr119238 13 35189260 to 35189267 7 + TSS region transcription start site region 119238
1700019C18Rik 13 35210660 to 35212048 1388 - lincRNA gene RIKEN cDNA 1700019C18 gene
Tssr122084 13 35211996 to 35212029 33 - TSS region transcription start site region 122084
Tssr122085 13 35212044 to 35212052 8 - TSS region transcription start site region 122085
Gm48694 13 35242971 to 35256521 13550 - lincRNA gene predicted gene, 48694
Gm22674 13 35293147 to 35293277 130 - snoRNA gene predicted gene, 22674
Gm48703 13 35395383 to 35455832 60449 + lincRNA gene predicted gene, 48703
Cpgi5441 13 35503527 to 35503692 165 CpG island CpG island 5441
D13Mit4 13 35524846 to 35525029 183 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 4
Gm48704 13 35543902 to 35545484 1582 + lincRNA gene predicted gene, 48704
Gm48707 13 35603030 to 35660777 57747 - lincRNA gene predicted gene, 48707
Cdyl 13 35659833 to 35874063 214230 + protein coding gene chromodomain protein, Y chromosome-like
Tssr119239 13 35659856 to 35659870 14 + TSS region transcription start site region 119239
Tssr119240 13 35662133 to 35662138 5 + TSS region transcription start site region 119240
Gm22126 13 35662135 to 35662276 141 + snRNA gene predicted gene, 22126
D13Mit85 13 35671614 to 35671787 173 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 85
D13Mit274 13 35736190 to 35736309 119 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology 274
Tssr119241 13 35738437 to 35738462 25 + TSS region transcription start site region 119241
Tssr119242 13 35738487 to 35738530 43 + TSS region transcription start site region 119242
Cpgi5442 13 35740435 to 35742473 2038 CpG island CpG island 5442
Tssr119243 13 35741374 to 35741385 11 + TSS region transcription start site region 119243
Tssr119244 13 35741408 to 35741516 108 + TSS region transcription start site region 119244
Gm48708 13 35773573 to 35776896 3323 - antisense lncRNA gene predicted gene, 48708
Tssr119245 13 35785196 to 35785200 4 + TSS region transcription start site region 119245
Gm48706 13 35798750 to 35802136 3386 + unclassified gene predicted gene, 48706
Tssr119246 13 35833556 to 35833559 3 + TSS region transcription start site region 119246
Tssr119247 13 35834837 to 35834841 4 + TSS region transcription start site region 119247
Tssr119248 13 35853556 to 35853568 12 + TSS region transcription start site region 119248
Tssr119249 13 35870744 to 35870750 6 + TSS region transcription start site region 119249
D13Mit60 13 35876925 to 35877067 142 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 60
Gssq1 13 35876925 to 35877067 142 QTL glomerulosclerosis severity QTL 1
Scgq5 13 35876925 to 96102654 60225729 QTL spontaneous crescentic glomerulonephritis QTL 5
Rpp40 13 35893472 to 35906359 12887 - protein coding gene ribonuclease P 40 subunit
Gm48746 13 35905457 to 35921389 15932 + lincRNA gene predicted gene, 48746
Cpgi5443 13 35905869 to 35906391 522 CpG island CpG island 5443
Tssr122086 13 35906324 to 35906364 40 - TSS region transcription start site region 122086
Gm48756 13 35937549 to 35937833 284 - pseudogene predicted gene, 48756
Ppp1r3g 13 35958839 to 35970388 11549 + protein coding gene protein phosphatase 1, regulatory subunit 3G
Tssr119250 13 35958850 to 35958862 12 + TSS region transcription start site region 119250
Tssr119251 13 35958872 to 35958886 14 + TSS region transcription start site region 119251
Gm30127 13 35959003 to 35961155 2152 - antisense lncRNA gene predicted gene, 30127
Tssr4042 13 35961388 to 35961393 5 + TSS region transcription start site region 4042
Tssr119252 13 35963127 to 35963131 4 + TSS region transcription start site region 119252
Tssr119253 13 35963570 to 35963575 5 + TSS region transcription start site region 119253
Tssr119254 13 35967860 to 35967888 28 + TSS region transcription start site region 119254
Cpgi5444 13 35968037 to 35969812 1775 CpG island CpG island 5444
Tssr119255 13 35968467 to 35968471 4 + TSS region transcription start site region 119255
Lyrm4 13 35978797 to 36117357 138560 - protein coding gene LYR motif containing 4
Tmed10-ps 13 35990861 to 35991520 659 - pseudogene transmembrane p24 trafficking protein 10, pseudogene
Gm18132 13 35992132 to 35993428 1296 + pseudogene predicted gene, 18132
Gm48770 13 35995453 to 36014464 19011 + antisense lncRNA gene predicted gene, 48770
Gm48765 13 36006725 to 36189723 182998 - antisense lncRNA gene predicted gene, 48765
Tssr119256 13 36096860 to 36096865 5 + TSS region transcription start site region 119256
9530001P21Rik 13 36110574 to 36113824 3250 unclassified gene RIKEN cDNA 9530001P21 gene
Cpgi5445 13 36117001 to 36118128 1127 CpG island CpG island 5445
Tssr122087 13 36117243 to 36117254 11 - TSS region transcription start site region 122087
Tssr122088 13 36117269 to 36117270 1 - TSS region transcription start site region 122088
Tssr119257 13 36117349 to 36117367 18 + TSS region transcription start site region 119257
Tssr122089 13 36117351 to 36117393 42 - TSS region transcription start site region 122089
Tssr122090 13 36117484 to 36117587 103 - TSS region transcription start site region 122090
Fars2 13 36117620 to 36537595 419975 + protein coding gene phenylalanine-tRNA synthetase 2 (mitochondrial)
Tssr119258 13 36117848 to 36117910 62 + TSS region transcription start site region 119258
Tssr119259 13 36117911 to 36117933 22 + TSS region transcription start site region 119259
Tssr119260 13 36120854 to 36120863 9 + TSS region transcription start site region 119260
D13Mit18 13 36166154 to 36166348 194 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 18
Gm48769 13 36182712 to 36183048 336 - pseudogene predicted gene, 48769
Gm40912 13 36207753 to 36228022 20269 + lncRNA gene predicted gene, 40912
Gm48766 13 36252359 to 36256920 4561 + unclassified gene predicted gene, 48766
Tssr119261 13 36255479 to 36255484 5 + TSS region transcription start site region 119261
Tssr119262 13 36263150 to 36263153 3 + TSS region transcription start site region 119262
Tssr119263 13 36359793 to 36359797 4 + TSS region transcription start site region 119263
V25Dq7 13 36400000 to 36400000 0 QTL vitamin D inactive form serum level QTL 7