Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:23771292-24791325

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim38 13 23778500 to 23791731 13231 + protein coding gene tripartite motif-containing 38
Tssr118866 13 23779262 to 23779271 9 + TSS region transcription start site region 118866
Tssr118867 13 23779282 to 23779294 12 + TSS region transcription start site region 118867
Gm11337 13 23794768 to 23804599 9831 - antisense lncRNA gene predicted gene 11337
Tssr118868 13 23806986 to 23807012 26 + TSS region transcription start site region 118868
Slc17a2 13 23806993 to 23825180 18187 + protein coding gene solute carrier family 17 (sodium phosphate), member 2
Tssr118869 13 23807029 to 23807063 34 + TSS region transcription start site region 118869
Tssr118870 13 23807065 to 23807077 12 + TSS region transcription start site region 118870
Tssr118871 13 23807095 to 23807102 7 + TSS region transcription start site region 118871
Tssr118872 13 23819868 to 23819870 2 + TSS region transcription start site region 118872
D13Mit1001 13 23829876 to 23830144 268 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1001
Tssr118873 13 23836897 to 23836910 13 + TSS region transcription start site region 118873
Tssr118874 13 23836926 to 23836961 35 + TSS region transcription start site region 118874
Tssr118875 13 23839401 to 23839442 41 + TSS region transcription start site region 118875
Slc17a3 13 23839434 to 23860716 21282 + protein coding gene solute carrier family 17 (sodium phosphate), member 3
Tssr118876 13 23839445 to 23839470 25 + TSS region transcription start site region 118876
Tssr118877 13 23839577 to 23839587 10 + TSS region transcription start site region 118877
Tssr118878 13 23839598 to 23839620 22 + TSS region transcription start site region 118878
Tssr4011 13 23839625 to 23839628 3 + TSS region transcription start site region 4011
Tssr4012 13 23839723 to 23839732 9 + TSS region transcription start site region 4012
Slc17a1 13 23867750 to 23895730 27980 + protein coding gene solute carrier family 17 (sodium phosphate), member 1
Tssr4013 13 23867983 to 23868013 30 + TSS region transcription start site region 4013
Tssr118879 13 23870259 to 23870266 7 + TSS region transcription start site region 118879
Tssr118880 13 23870284 to 23870308 24 + TSS region transcription start site region 118880
Tssr118881 13 23880882 to 23880884 2 + TSS region transcription start site region 118881
Tssr121757 13 23892664 to 23892709 45 - TSS region transcription start site region 121757
Tssr118882 13 23892807 to 23892818 11 + TSS region transcription start site region 118882
Slc17a4 13 23897879 to 23915009 17130 - protein coding gene solute carrier family 17 (sodium phosphate), member 4
Tssr121758 13 23914976 to 23914989 13 - TSS region transcription start site region 121758
Tssr121759 13 23914998 to 23915011 13 - TSS region transcription start site region 121759
Snrp1c-ps2 13 23923800 to 23924164 364 - pseudogene U1 small nuclear ribonucleoprotein 1C, pseudogene 2
Gm33516 13 23933086 to 23949115 16029 + lncRNA gene predicted gene, 33516
Hist1h2ba 13 23933773 to 23934156 383 - protein coding gene histone cluster 1, H2ba
Tssr121760 13 23934210 to 23934225 15 - TSS region transcription start site region 121760
Tssr118883 13 23934434 to 23934439 5 + TSS region transcription start site region 118883
Hist1h2aa 13 23934462 to 23934851 389 + protein coding gene histone cluster 1, H2aa
Cpgi5378 13 23934467 to 23934884 417 CpG island CpG island 5378
Gm44344 13 23934707 to 23934835 128 - miRNA gene predicted gene, 44344
Scgn 13 23953456 to 23991214 37758 - protein coding gene secretagogin, EF-hand calcium binding protein
Gm11339 13 23956809 to 23966175 9366 + antisense lncRNA gene predicted gene 11339
Tssr121761 13 23967138 to 23967145 7 - TSS region transcription start site region 121761
Tssr121762 13 23967155 to 23967179 24 - TSS region transcription start site region 121762
Tssr118884 13 23967281 to 23967287 6 + TSS region transcription start site region 118884
Cpgi5379 13 23990914 to 23991353 439 CpG island CpG island 5379
Tssr121763 13 23991158 to 23991181 23 - TSS region transcription start site region 121763
Carmil1 13 24012481 to 24280790 268309 - protein coding gene capping protein regulator and myosin 1 linker 1
Tssr4014 13 24024423 to 24024428 5 + TSS region transcription start site region 4014
D13Ertd224e 13 24057899 to 24058110 211 DNA segment DNA segment, Chr 13, ERATO Doi 224, expressed
Tssr121764 13 24059289 to 24059313 24 - TSS region transcription start site region 121764
Tssr121765 13 24059320 to 24059324 4 - TSS region transcription start site region 121765
4933427I18Rik 13 24059424 to 24067677 8253 protein coding gene RIKEN cDNA 4933427I18 gene
Tssr121766 13 24094464 to 24094539 75 - TSS region transcription start site region 121766
Tssr118885 13 24104298 to 24104342 44 + TSS region transcription start site region 118885
Tssr118886 13 24104364 to 24104373 9 + TSS region transcription start site region 118886
Tssr118887 13 24105566 to 24105579 13 + TSS region transcription start site region 118887
Tssr118888 13 24105602 to 24105613 11 + TSS region transcription start site region 118888
Tssr121767 13 24135084 to 24135097 13 - TSS region transcription start site region 121767
Tssr121768 13 24155203 to 24155216 13 - TSS region transcription start site region 121768
Tssr118889 13 24159913 to 24159922 9 + TSS region transcription start site region 118889
Tssr121769 13 24178249 to 24178253 4 - TSS region transcription start site region 121769
Gm33573 13 24178265 to 24189252 10987 + lncRNA gene predicted gene, 33573
Gm11343 13 24195897 to 24196495 598 + pseudogene predicted gene 11343
Tssr121770 13 24206237 to 24206254 17 - TSS region transcription start site region 121770
Tssr121771 13 24206260 to 24206269 9 - TSS region transcription start site region 121771
Tssr121772 13 24206281 to 24206295 14 - TSS region transcription start site region 121772
Tssr121773 13 24222145 to 24222148 3 - TSS region transcription start site region 121773
Tssr121774 13 24257801 to 24257804 3 - TSS region transcription start site region 121774
Tssr121775 13 24272856 to 24272860 4 - TSS region transcription start site region 121775
Cpgi5380 13 24279993 to 24281559 1566 CpG island CpG island 5380
Tssr121776 13 24280765 to 24280778 13 - TSS region transcription start site region 121776
Tssr121777 13 24280948 to 24280995 47 - TSS region transcription start site region 121777
Tssr121778 13 24281224 to 24281277 53 - TSS region transcription start site region 121778
Tssr121779 13 24281292 to 24281325 33 - TSS region transcription start site region 121779
Gm11340 13 24291394 to 24291805 411 - pseudogene predicted gene 11340
Gm23340 13 24316730 to 24316852 122 - snoRNA gene predicted gene, 23340
Gm11341 13 24320302 to 24320748 446 + pseudogene predicted gene 11341
Gm11342 13 24324108 to 24371760 47652 - antisense lncRNA gene predicted gene 11342
Tssr4015 13 24327251 to 24327271 20 + TSS region transcription start site region 4015
Cmah 13 24327404 to 24477289 149885 + protein coding gene cytidine monophospho-N-acetylneuraminic acid hydroxylase
Tssr118890 13 24327415 to 24327461 46 + TSS region transcription start site region 118890
Tssr121780 13 24329023 to 24329035 12 - TSS region transcription start site region 121780
Tssr121781 13 24329045 to 24329052 7 - TSS region transcription start site region 121781
Tssr121782 13 24329124 to 24329147 23 - TSS region transcription start site region 121782
Tssr121783 13 24330205 to 24330218 13 - TSS region transcription start site region 121783
Tssr118891 13 24373511 to 24373517 6 + TSS region transcription start site region 118891
Tssr121784 13 24375942 to 24375959 17 - TSS region transcription start site region 121784
Tssr121785 13 24375962 to 24375972 10 - TSS region transcription start site region 121785
Tssr121786 13 24376022 to 24376033 11 - TSS region transcription start site region 121786
Tssr118892 13 24376034 to 24376045 11 + TSS region transcription start site region 118892
Tssr4016 13 24376050 to 24376061 11 + TSS region transcription start site region 4016
Tssr118893 13 24376070 to 24376109 39 + TSS region transcription start site region 118893
Tssr118894 13 24376134 to 24376145 11 + TSS region transcription start site region 118894
Tssr118895 13 24376168 to 24376197 29 + TSS region transcription start site region 118895
Tssr121787 13 24384019 to 24384061 42 - TSS region transcription start site region 121787
Tssr121788 13 24391655 to 24391657 2 - TSS region transcription start site region 121788
Tssr118896 13 24395256 to 24395279 23 + TSS region transcription start site region 118896
Tssr118897 13 24397380 to 24397391 11 + TSS region transcription start site region 118897
Tssr118898 13 24397411 to 24397422 11 + TSS region transcription start site region 118898
Tssr118899 13 24397426 to 24397436 10 + TSS region transcription start site region 118899
D13Mit15 13 24399952 to 24400094 142 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 15
Tssr121789 13 24400345 to 24400346 1 - TSS region transcription start site region 121789
Gm11344 13 24410106 to 24410440 334 - pseudogene predicted gene 11344
Tssr118900 13 24414501 to 24414518 17 + TSS region transcription start site region 118900
Tssr121790 13 24414798 to 24414814 16 - TSS region transcription start site region 121790
Tssr121791 13 24414934 to 24414947 13 - TSS region transcription start site region 121791
Tssr121792 13 24414961 to 24414980 19 - TSS region transcription start site region 121792
Tssr121793 13 24415001 to 24415008 7 - TSS region transcription start site region 121793
Tssr118901 13 24415104 to 24415123 19 + TSS region transcription start site region 118901
Tssr121794 13 24415490 to 24415501 11 - TSS region transcription start site region 121794
Tssr118902 13 24416171 to 24416180 9 + TSS region transcription start site region 118902
Tssr118903 13 24416628 to 24416668 40 + TSS region transcription start site region 118903
Tssr118904 13 24416741 to 24416750 9 + TSS region transcription start site region 118904
Tssr118905 13 24416878 to 24416951 73 + TSS region transcription start site region 118905
Tssr118906 13 24416975 to 24416982 7 + TSS region transcription start site region 118906
Tssr4017 13 24417128 to 24417139 11 + TSS region transcription start site region 4017
Tssr118907 13 24417654 to 24417677 23 + TSS region transcription start site region 118907
Tssr118908 13 24434067 to 24434076 9 + TSS region transcription start site region 118908
Gm22013 13 24486662 to 24486764 102 - snRNA gene predicted gene, 22013
Tssr118909 13 24487272 to 24487322 50 + TSS region transcription start site region 118909
Tssr118910 13 24487831 to 24487838 7 + TSS region transcription start site region 118910
Tssr118911 13 24501539 to 24501576 37 + TSS region transcription start site region 118911
Tssr118912 13 24501577 to 24501598 21 + TSS region transcription start site region 118912
Tssr118913 13 24501613 to 24501625 12 + TSS region transcription start site region 118913
Tssr118914 13 24514941 to 24514944 3 + TSS region transcription start site region 118914
Tssr118915 13 24518197 to 24518229 32 + TSS region transcription start site region 118915
Tssr118916 13 24562941 to 24562942 1 + TSS region transcription start site region 118916
Tssr118917 13 24575557 to 24575569 12 + TSS region transcription start site region 118917
Tssr118918 13 24575573 to 24575585 12 + TSS region transcription start site region 118918
Ripor2 13 24582189 to 24733816 151627 + protein coding gene RHO family interacting cell polarization regulator 2
Tssr118919 13 24597465 to 24597507 42 + TSS region transcription start site region 118919
Gm11346 13 24598124 to 24604767 6643 - pseudogene predicted gene 11346
Tssr121795 13 24599533 to 24599541 8 - TSS region transcription start site region 121795
Tssr118920 13 24603244 to 24603252 8 + TSS region transcription start site region 118920
Tssr121796 13 24603794 to 24603805 11 - TSS region transcription start site region 121796
Tssr121797 13 24603859 to 24603867 8 - TSS region transcription start site region 121797
Tssr121798 13 24603868 to 24603886 18 - TSS region transcription start site region 121798
Tssr121799 13 24603892 to 24603904 12 - TSS region transcription start site region 121799
Tssr121800 13 24604214 to 24604231 17 - TSS region transcription start site region 121800
Tssr121801 13 24604789 to 24604795 6 - TSS region transcription start site region 121801
Cpgi5381 13 24604849 to 24605062 213 CpG island CpG island 5381
Tssr118921 13 24605078 to 24605081 3 + TSS region transcription start site region 118921
Tssr121802 13 24613614 to 24613623 9 - TSS region transcription start site region 121802
Tssr121803 13 24613650 to 24613678 28 - TSS region transcription start site region 121803
Tssr4018 13 24614085 to 24614093 8 - TSS region transcription start site region 4018
Tssr118922 13 24614205 to 24614214 9 + TSS region transcription start site region 118922
Tssr118923 13 24614218 to 24614244 26 + TSS region transcription start site region 118923
Tssr118924 13 24614576 to 24614583 7 + TSS region transcription start site region 118924
Tssr118925 13 24614588 to 24614603 15 + TSS region transcription start site region 118925
Tssr118926 13 24614608 to 24614634 26 + TSS region transcription start site region 118926
Tssr118927 13 24616859 to 24616865 6 + TSS region transcription start site region 118927
C530050E15Rik 13 24631918 to 24638567 6649 - lincRNA gene RIKEN cDNA C530050E15 gene
Tssr118928 13 24633464 to 24633477 13 + TSS region transcription start site region 118928
Tssr118929 13 24633582 to 24633604 22 + TSS region transcription start site region 118929
Tssr121804 13 24634426 to 24634449 23 - TSS region transcription start site region 121804
Tssr4019 13 24634657 to 24634667 10 + TSS region transcription start site region 4019
Tssr118930 13 24634677 to 24634684 7 + TSS region transcription start site region 118930
Tssr121805 13 24635916 to 24635924 8 - TSS region transcription start site region 121805
Tssr118931 13 24636028 to 24636030 2 + TSS region transcription start site region 118931
Tssr118932 13 24636093 to 24636094 1 + TSS region transcription start site region 118932
Cpgi5382 13 24638305 to 24639386 1081 CpG island CpG island 5382
Tssr118933 13 24638484 to 24638510 26 + TSS region transcription start site region 118933
Tssr118934 13 24638636 to 24638736 100 + TSS region transcription start site region 118934
Tssr121806 13 24640299 to 24640310 11 - TSS region transcription start site region 121806
Tssr118935 13 24651434 to 24651438 4 + TSS region transcription start site region 118935
Tssr118936 13 24676823 to 24676838 15 + TSS region transcription start site region 118936
Tssr121807 13 24703497 to 24703538 41 - TSS region transcription start site region 121807
Tssr118937 13 24706074 to 24706089 15 + TSS region transcription start site region 118937
Cpgi5383 13 24713639 to 24713921 282 CpG island CpG island 5383
Tssr118938 13 24721673 to 24721683 10 + TSS region transcription start site region 118938
Tssr118939 13 24721692 to 24721701 9 + TSS region transcription start site region 118939
Tssr118940 13 24722586 to 24722588 2 + TSS region transcription start site region 118940
Tssr118941 13 24729641 to 24729645 4 + TSS region transcription start site region 118941
Tssr118942 13 24741198 to 24741203 5 + TSS region transcription start site region 118942
Tssr118943 13 24741210 to 24741237 27 + TSS region transcription start site region 118943
Armh2 13 24741232 to 24746592 5360 + protein coding gene armadillo-like helical domain containing 2
Gmnn 13 24751845 to 24761923 10078 - protein coding gene geminin
Cpgi5384 13 24761185 to 24762213 1028 CpG island CpG island 5384
Tssr121808 13 24761443 to 24761458 15 - TSS region transcription start site region 121808
Tssr118944 13 24761550 to 24761594 44 + TSS region transcription start site region 118944
Tssr121809 13 24761875 to 24761950 75 - TSS region transcription start site region 121809
Tssr118945 13 24773100 to 24773104 4 + TSS region transcription start site region 118945