Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:21941548-22111620

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11280 13 21940374 to 21945197 4823 - bidirectional promoter lncRNA gene predicted gene 11280
Cpgi5335 13 21944894 to 21945785 891 CpG island CpG island 5335
Zfp184 13 21944937 to 21960489 15552 + protein coding gene zinc finger protein 184 (Kruppel-like)
Tssr118808 13 21945084 to 21945140 56 + TSS region transcription start site region 118808
Gm11281 13 21953053 to 21953628 575 - pseudogene predicted gene 11281
Gm11282 13 21957023 to 21958123 1100 - pseudogene predicted gene 11282
n-TKttt22 13 21971788 to 21971860 72 + tRNA gene nuclear encoded tRNA lysine 22 (anticodon TTT)
n-TMcat8 13 21975032 to 21975103 71 + tRNA gene nuclear encoded tRNA methionine 8 (anticodon CAT)
Cpgi5336 13 21981063 to 21982087 1024 CpG island CpG island 5336
Tssr118809 13 21981190 to 21981204 14 + TSS region transcription start site region 118809
Pom121l2 13 21981194 to 21988734 7540 + protein coding gene POM121 membrane glycoprotein-like 2 (rat)
Tssr118810 13 21981218 to 21981223 5 + TSS region transcription start site region 118810
Tssr118811 13 21981452 to 21981504 52 + TSS region transcription start site region 118811
Tssr118812 13 21981517 to 21981522 5 + TSS region transcription start site region 118812
Tssr121682 13 21983574 to 21983581 7 - TSS region transcription start site region 121682
n-TSgct8 13 21994190 to 21994271 81 - tRNA gene nuclear encoded tRNA serine 8 (anticodon GCT)
n-TQctg1 13 21996581 to 21996652 71 - tRNA gene nuclear encoded tRNA glutamine 1 (anticodon CTG)
Prss16 13 22002176 to 22009741 7565 - protein coding gene protease, serine 16 (thymus)
Cpgi5337 13 22005824 to 22007356 1532 CpG island CpG island 5337
Tssr121683 13 22006405 to 22006417 12 - TSS region transcription start site region 121683
Tssr121684 13 22006425 to 22006447 22 - TSS region transcription start site region 121684
Tssr118813 13 22006532 to 22006550 18 + TSS region transcription start site region 118813
Tssr118814 13 22006564 to 22006574 10 + TSS region transcription start site region 118814
Tssr118815 13 22006589 to 22006602 13 + TSS region transcription start site region 118815
Tssr121685 13 22009713 to 22009724 11 - TSS region transcription start site region 121685
Tssr121686 13 22009730 to 22009749 19 - TSS region transcription start site region 121686
Tssr121687 13 22009757 to 22009771 14 - TSS region transcription start site region 121687
Gm11290 13 22014468 to 22020738 6270 + lincRNA gene predicted gene 11290
n-TVaac3 13 22015791 to 22015863 72 - tRNA gene nuclear encoded tRNA valine 3 (anticodon AAC)
Cpgi5338 13 22019927 to 22020333 406 CpG island CpG island 5338
n-TRacg1 13 22021144 to 22021216 72 - tRNA gene nuclear encoded tRNA arginine 1 (anticodon ACG)
n-TScga1 13 22022419 to 22022500 81 - tRNA gene nuclear encoded tRNA serine 1 (anticodon CGA)
n-TVcac8 13 22026548 to 22026620 72 + tRNA gene nuclear encoded tRNA valine 8 (anticodon CAC)
Gm11292 13 22026699 to 22032196 5497 + unclassified non-coding RNA gene predicted gene 11292
Cpgi5339 13 22028649 to 22029311 662 CpG island CpG island 5339
n-TIaat7 13 22029223 to 22029296 73 + tRNA gene nuclear encoded tRNA isoleucine 7 (anticodon AAT)
n-TTagt1 13 22030100 to 22030173 73 - tRNA gene nuclear encoded tRNA threonine 1 (anticodon AGT)
Gm44390 13 22035164 to 22035307 143 + miRNA gene predicted gene, 44390
Hist1h2ah 13 22035164 to 22035568 404 - protein coding gene histone cluster 1, H2ah
Cpgi5340 13 22035529 to 22035900 371 CpG island CpG island 5340
Tssr121688 13 22035589 to 22035606 17 - TSS region transcription start site region 121688
Tssr118816 13 22035829 to 22035848 19 + TSS region transcription start site region 118816
Tssr118817 13 22035870 to 22035874 4 + TSS region transcription start site region 118817
Hist1h2bk 13 22035870 to 22036345 475 + protein coding gene histone cluster 1, H2bk
Cpgi5341 13 22040909 to 22041468 559 CpG island CpG island 5341
Hist1h4i 13 22040960 to 22041362 402 - protein coding gene histone cluster 1, H4i
Tssr121689 13 22041357 to 22041363 6 - TSS region transcription start site region 121689
Hist1h2ag 13 22042478 to 22042949 471 - protein coding gene histone cluster 1, H2ag
Gm44486 13 22042545 to 22042682 137 + miRNA gene predicted gene, 44486
Cpgi5342 13 22042908 to 22043247 339 CpG island CpG island 5342
Tssr121690 13 22042951 to 22042978 27 - TSS region transcription start site region 121690
Tssr118818 13 22043189 to 22043208 19 + TSS region transcription start site region 118818
Hist1h2bj 13 22043230 to 22043658 428 + protein coding gene histone cluster 1, H2bj
Gm48356 13 22049514 to 22051450 1936 + unclassified gene predicted gene, 48356
Tssr118819 13 22049834 to 22049858 24 + TSS region transcription start site region 118819
Cpgi5343 13 22050656 to 22051331 675 CpG island CpG island 5343
n-TSgct5 13 22050686 to 22050767 81 - tRNA gene nuclear encoded tRNA serine 5 (anticodon GCT)
Vmn1r-ps92 13 22057346 to 22057862 516 - pseudogene vomeronasal 1 receptor, pseudogene 92
Vmn1r-ps93 13 22078253 to 22078684 431 + pseudogene vomeronasal 1 receptor, pseudogene 93
Gm11285 13 22083466 to 22083787 321 - pseudogene predicted gene 11285
Gm26300 13 22083541 to 22083634 93 - miRNA gene predicted gene, 26300
Vmn1r188 13 22087878 to 22088804 926 + protein coding gene vomeronasal 1 receptor 188
Vmn1r-ps94 13 22092154 to 22092589 435 + pseudogene vomeronasal 1 receptor, pseudogene 94
Vmn1r189 13 22101727 to 22102665 938 - protein coding gene vomeronasal 1 receptor 189