Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:21805320-21905393

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hist1h2bq 13 21806612 to 21810197 3585 - protein coding gene histone cluster 1, H2bq
Tssr121678 13 21810190 to 21810200 10 - TSS region transcription start site region 121678
Tssr118795 13 21810428 to 21810442 14 + TSS region transcription start site region 118795
Hist1h2ao 13 21810465 to 21810944 479 + protein coding gene histone cluster 1, H2ao
Gm19658 13 21810712 to 21810849 137 - miRNA gene predicted gene, 19658
Tssr118796 13 21811737 to 21811754 17 + TSS region transcription start site region 118796
Hist1h4m 13 21811746 to 21812147 401 + protein coding gene histone cluster 1, H4m
Tssr118797 13 21811760 to 21811766 6 + TSS region transcription start site region 118797
Gm46403 13 21813170 to 21819385 6215 + protein coding gene predicted gene, 46403
Hist1h4n 13 21831793 to 21832158 365 - protein coding gene histone cluster 1, H4n
Tssr121679 13 21832194 to 21832198 4 - TSS region transcription start site region 121679
Hist1h2ap 13 21833024 to 21833475 451 - protein coding gene histone cluster 1, H2ap
Gm44466 13 21833093 to 21833230 137 + miRNA gene predicted gene, 44466
Tssr118798 13 21833736 to 21833751 15 + TSS region transcription start site region 118798
Hist1h2br 13 21833743 to 21837530 3787 + protein coding gene histone cluster 1 H2br
n-TLtaa2 13 21848022 to 21848104 82 - tRNA gene nuclear encoded tRNA leucine 2 (anticodon TAA)
n-TIaat11 13 21855320 to 21855393 73 - tRNA gene nuclear encoded tRNA isoleucine 11 (anticodon AAT)
n-TTagt4 13 21856021 to 21856094 73 + tRNA gene nuclear encoded tRNA threonine 4 (anticodon AGT)
Tssr118799 13 21865842 to 21865851 9 + TSS region transcription start site region 118799
Tssr118800 13 21866302 to 21866310 8 + TSS region transcription start site region 118800
Gm11278 13 21875233 to 21876229 996 - pseudogene predicted gene 11278
Tssr118801 13 21878201 to 21878204 3 + TSS region transcription start site region 118801
n-TIaat10 13 21882033 to 21882106 73 - tRNA gene nuclear encoded tRNA isoleucine 10 (anticodon AAT)
n-TFgaa1 13 21882885 to 21882957 72 - tRNA gene nuclear encoded tRNA pheylalanine 1 (anticodon GAA)
Cpgi5333 13 21896903 to 21897096 193 CpG island CpG island 5333
Mir1983 13 21896918 to 21897049 131 - miRNA gene microRNA 1983
n-TItat14 13 21896938 to 21897031 93 - tRNA gene nuclear encoded tRNA isoleucine 14 (anticodon TAT)
Tssr118802 13 21897186 to 21897198 12 + TSS region transcription start site region 118802
Tssr121680 13 21897528 to 21897535 7 - TSS region transcription start site region 121680
Tssr121681 13 21901113 to 21901116 3 - TSS region transcription start site region 121681
Gm11279 13 21903829 to 21904762 933 + pseudogene predicted gene 11279