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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:21722528-22072535

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5326 13 21721764 to 21722537 773 CpG island CpG island 5326
Cpgi5327 13 21734955 to 21735595 640 CpG island CpG island 5327
Hist1h4j 13 21735034 to 21735456 422 + protein coding gene histone cluster 1, H4j
Tssr118787 13 21735055 to 21735070 15 + TSS region transcription start site region 118787
Tssr121669 13 21746316 to 21746348 32 - TSS region transcription start site region 121669
Cpgi5328 13 21750067 to 21750603 536 CpG island CpG island 5328
Hist1h4k 13 21750194 to 21750505 311 - protein coding gene histone cluster 1, H4k
Tssr121670 13 21750535 to 21750543 8 - TSS region transcription start site region 121670
Tssr118788 13 21750747 to 21750753 6 + TSS region transcription start site region 118788
Cpgi5329 13 21753328 to 21754154 826 CpG island CpG island 5329
Tssr118789 13 21753427 to 21753454 27 + TSS region transcription start site region 118789
Hist1h2ak 13 21753435 to 21753827 392 - protein coding gene histone cluster 1, H2ak
Gm44454 13 21753445 to 21753582 137 + miRNA gene predicted gene, 44454
Tssr121671 13 21753455 to 21753470 15 - TSS region transcription start site region 121671
Tssr121672 13 21753661 to 21753699 38 - TSS region transcription start site region 121672
Tssr121673 13 21753851 to 21753868 17 - TSS region transcription start site region 121673
Tssr118790 13 21754031 to 21754045 14 + TSS region transcription start site region 118790
Tssr118791 13 21754053 to 21754061 8 + TSS region transcription start site region 118791
Tssr118792 13 21754067 to 21754083 16 + TSS region transcription start site region 118792
Tssr118793 13 21754088 to 21754093 5 + TSS region transcription start site region 118793
Hist1h2bn 13 21754123 to 21754503 380 + protein coding gene histone cluster 1, H2bn
Gm11274 13 21769125 to 21770476 1351 + lincRNA gene predicted gene 11274
Cpgi5330 13 21779255 to 21779538 283 CpG island CpG island 5330
Hist1h1b 13 21779883 to 21780625 742 - protein coding gene histone cluster 1, H1b
Tssr121674 13 21780148 to 21780185 37 - TSS region transcription start site region 121674
Cpgi5331 13 21780238 to 21780750 512 CpG island CpG island 5331
Tssr4006 13 21780445 to 21780456 11 - TSS region transcription start site region 4006
Tssr121675 13 21780616 to 21780632 16 - TSS region transcription start site region 121675
Hist1h3i 13 21782960 to 21783370 410 - protein coding gene histone cluster 1, H3i
Tssr121676 13 21783391 to 21783406 15 - TSS region transcription start site region 121676
Hist1h2an 13 21786826 to 21787218 392 - protein coding gene histone cluster 1, H2an
Gm44346 13 21786875 to 21787015 140 + miRNA gene predicted gene, 44346
Cpgi5332 13 21787194 to 21787551 357 CpG island CpG island 5332
Tssr121677 13 21787241 to 21787256 15 - TSS region transcription start site region 121677
Hist1h2bp 13 21787461 to 21789213 1752 + protein coding gene histone cluster 1, H2bp
Tssr118794 13 21787480 to 21787494 14 + TSS region transcription start site region 118794
n-Tsta1 13 21795799 to 21795881 82 + tRNA gene nuclear encoded tRNA suppressor ta1 (anticodon TTA)
Hist1h2bq 13 21806612 to 21810197 3585 - protein coding gene histone cluster 1, H2bq
Tssr121678 13 21810190 to 21810200 10 - TSS region transcription start site region 121678
Tssr118795 13 21810428 to 21810442 14 + TSS region transcription start site region 118795
Hist1h2ao 13 21810465 to 21810944 479 + protein coding gene histone cluster 1, H2ao
Gm19658 13 21810712 to 21810849 137 - miRNA gene predicted gene, 19658
Tssr118796 13 21811737 to 21811754 17 + TSS region transcription start site region 118796
Hist1h4m 13 21811746 to 21812147 401 + protein coding gene histone cluster 1, H4m
Tssr118797 13 21811760 to 21811766 6 + TSS region transcription start site region 118797
Gm46403 13 21813170 to 21819385 6215 + protein coding gene predicted gene, 46403
Hist1h4n 13 21831793 to 21832158 365 - protein coding gene histone cluster 1, H4n
Tssr121679 13 21832194 to 21832198 4 - TSS region transcription start site region 121679
Hist1h2ap 13 21833024 to 21833475 451 - protein coding gene histone cluster 1, H2ap
Gm44466 13 21833093 to 21833230 137 + miRNA gene predicted gene, 44466
Tssr118798 13 21833736 to 21833751 15 + TSS region transcription start site region 118798
Hist1h2br 13 21833743 to 21837530 3787 + protein coding gene histone cluster 1 H2br
n-TLtaa2 13 21848022 to 21848104 82 - tRNA gene nuclear encoded tRNA leucine 2 (anticodon TAA)
n-TIaat11 13 21855320 to 21855393 73 - tRNA gene nuclear encoded tRNA isoleucine 11 (anticodon AAT)
n-TTagt4 13 21856021 to 21856094 73 + tRNA gene nuclear encoded tRNA threonine 4 (anticodon AGT)
Tssr118799 13 21865842 to 21865851 9 + TSS region transcription start site region 118799
Tssr118800 13 21866302 to 21866310 8 + TSS region transcription start site region 118800
Gm11278 13 21875233 to 21876229 996 - pseudogene predicted gene 11278
Tssr118801 13 21878201 to 21878204 3 + TSS region transcription start site region 118801
n-TIaat10 13 21882033 to 21882106 73 - tRNA gene nuclear encoded tRNA isoleucine 10 (anticodon AAT)
n-TFgaa1 13 21882885 to 21882957 72 - tRNA gene nuclear encoded tRNA pheylalanine 1 (anticodon GAA)
Cpgi5333 13 21896903 to 21897096 193 CpG island CpG island 5333
Mir1983 13 21896918 to 21897049 131 - miRNA gene microRNA 1983
n-TItat14 13 21896938 to 21897031 93 - tRNA gene nuclear encoded tRNA isoleucine 14 (anticodon TAT)
Tssr118802 13 21897186 to 21897198 12 + TSS region transcription start site region 118802
Tssr121680 13 21897528 to 21897535 7 - TSS region transcription start site region 121680
Tssr121681 13 21901113 to 21901116 3 - TSS region transcription start site region 121681
Gm11279 13 21903829 to 21904762 933 + pseudogene predicted gene 11279
n-TMcat2 13 21907111 to 21907182 71 + tRNA gene nuclear encoded tRNA methionine 2 (anticodon CAT)
n-TKttt23 13 21907940 to 21908012 72 + tRNA gene nuclear encoded tRNA lysine 23 (anticodon TTT)
Gm40831 13 21910872 to 21912358 1486 + lncRNA gene predicted gene, 40831
Tssr118803 13 21910921 to 21910931 10 + TSS region transcription start site region 118803
Tssr118804 13 21910939 to 21910949 10 + TSS region transcription start site region 118804
Tssr118805 13 21910966 to 21910975 9 + TSS region transcription start site region 118805
n-TDgtc11 13 21911313 to 21911384 71 + tRNA gene nuclear encoded tRNA aspartic acid 11 (anticodon GTC)
n-TLcaa2 13 21914838 to 21914943 105 + tRNA gene nuclear encoded tRNA leucine 2 (anticodon CAA)
n-TRtct3 13 21917162 to 21917247 85 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon TCT)
Cpgi5334 13 21918773 to 21919312 539 CpG island CpG island 5334
n-TSaga5 13 21919215 to 21919296 81 + tRNA gene nuclear encoded tRNA serine 5 (anticodon AGA)
n-TQctg10 13 21920200 to 21920271 71 + tRNA gene nuclear encoded tRNA glutamine 10 (anticodon CTG)
Gm44456 13 21924928 to 21925016 88 - miRNA gene predicted gene, 44456
n-TStga2 13 21924935 to 21925016 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon TGA)
D13Mit135 13 21926206 to 21926353 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 135
n-TSaga6 13 21927857 to 21927938 81 + tRNA gene nuclear encoded tRNA serine 6 (anticodon AGA)
n-TMcat10 13 21931169 to 21931240 71 - tRNA gene nuclear encoded tRNA methionine 10 (anticodon CAT)
n-TQctg8 13 21933961 to 21934032 71 - tRNA gene nuclear encoded tRNA glutamine 8 (anticodon CTG)
Tssr118806 13 21935421 to 21935424 3 + TSS region transcription start site region 118806
n-TDgtc13 13 21935497 to 21935568 71 - tRNA gene nuclear encoded tRNA aspartic acid 13 (anticodon GTC)
Tssr118807 13 21936187 to 21936191 4 + TSS region transcription start site region 118807
n-TSaga1 13 21937094 to 21937175 81 - tRNA gene nuclear encoded tRNA serine 1 (anticodon AGA)
n-TDgtc12 13 21940319 to 21940390 71 - tRNA gene nuclear encoded tRNA aspartic acid 12 (anticodon GTC)
Gm11280 13 21940374 to 21945197 4823 - bidirectional promoter lncRNA gene predicted gene 11280
n-TSaga8 13 21940914 to 21940995 81 - tRNA gene nuclear encoded tRNA serine 8 (anticodon AGA)
Cpgi5335 13 21944894 to 21945785 891 CpG island CpG island 5335
Zfp184 13 21944937 to 21960489 15552 + protein coding gene zinc finger protein 184 (Kruppel-like)
Tssr118808 13 21945084 to 21945140 56 + TSS region transcription start site region 118808
Gm11281 13 21953053 to 21953628 575 - pseudogene predicted gene 11281
Gm11282 13 21957023 to 21958123 1100 - pseudogene predicted gene 11282
n-TKttt22 13 21971788 to 21971860 72 + tRNA gene nuclear encoded tRNA lysine 22 (anticodon TTT)
n-TMcat8 13 21975032 to 21975103 71 + tRNA gene nuclear encoded tRNA methionine 8 (anticodon CAT)
Cpgi5336 13 21981063 to 21982087 1024 CpG island CpG island 5336
Tssr118809 13 21981190 to 21981204 14 + TSS region transcription start site region 118809
Pom121l2 13 21981194 to 21988734 7540 + protein coding gene POM121 membrane glycoprotein-like 2 (rat)
Tssr118810 13 21981218 to 21981223 5 + TSS region transcription start site region 118810
Tssr118811 13 21981452 to 21981504 52 + TSS region transcription start site region 118811
Tssr118812 13 21981517 to 21981522 5 + TSS region transcription start site region 118812
Tssr121682 13 21983574 to 21983581 7 - TSS region transcription start site region 121682
n-TSgct8 13 21994190 to 21994271 81 - tRNA gene nuclear encoded tRNA serine 8 (anticodon GCT)
n-TQctg1 13 21996581 to 21996652 71 - tRNA gene nuclear encoded tRNA glutamine 1 (anticodon CTG)
Prss16 13 22002176 to 22009741 7565 - protein coding gene protease, serine 16 (thymus)
Cpgi5337 13 22005824 to 22007356 1532 CpG island CpG island 5337
Tssr121683 13 22006405 to 22006417 12 - TSS region transcription start site region 121683
Tssr121684 13 22006425 to 22006447 22 - TSS region transcription start site region 121684
Tssr118813 13 22006532 to 22006550 18 + TSS region transcription start site region 118813
Tssr118814 13 22006564 to 22006574 10 + TSS region transcription start site region 118814
Tssr118815 13 22006589 to 22006602 13 + TSS region transcription start site region 118815
Tssr121685 13 22009713 to 22009724 11 - TSS region transcription start site region 121685
Tssr121686 13 22009730 to 22009749 19 - TSS region transcription start site region 121686
Tssr121687 13 22009757 to 22009771 14 - TSS region transcription start site region 121687
Gm11290 13 22014468 to 22020738 6270 + lincRNA gene predicted gene 11290
n-TVaac3 13 22015791 to 22015863 72 - tRNA gene nuclear encoded tRNA valine 3 (anticodon AAC)
Cpgi5338 13 22019927 to 22020333 406 CpG island CpG island 5338
n-TRacg1 13 22021144 to 22021216 72 - tRNA gene nuclear encoded tRNA arginine 1 (anticodon ACG)
n-TScga1 13 22022419 to 22022500 81 - tRNA gene nuclear encoded tRNA serine 1 (anticodon CGA)
n-TVcac8 13 22026548 to 22026620 72 + tRNA gene nuclear encoded tRNA valine 8 (anticodon CAC)
Gm11292 13 22026699 to 22032196 5497 + unclassified non-coding RNA gene predicted gene 11292
Cpgi5339 13 22028649 to 22029311 662 CpG island CpG island 5339
n-TIaat7 13 22029223 to 22029296 73 + tRNA gene nuclear encoded tRNA isoleucine 7 (anticodon AAT)
n-TTagt1 13 22030100 to 22030173 73 - tRNA gene nuclear encoded tRNA threonine 1 (anticodon AGT)
Hist1h2ah 13 22035164 to 22035568 404 - protein coding gene histone cluster 1, H2ah
Gm44390 13 22035164 to 22035307 143 + miRNA gene predicted gene, 44390
Cpgi5340 13 22035529 to 22035900 371 CpG island CpG island 5340
Tssr121688 13 22035589 to 22035606 17 - TSS region transcription start site region 121688
Tssr118816 13 22035829 to 22035848 19 + TSS region transcription start site region 118816
Tssr118817 13 22035870 to 22035874 4 + TSS region transcription start site region 118817
Hist1h2bk 13 22035870 to 22036345 475 + protein coding gene histone cluster 1, H2bk
Cpgi5341 13 22040909 to 22041468 559 CpG island CpG island 5341
Hist1h4i 13 22040960 to 22041362 402 - protein coding gene histone cluster 1, H4i
Tssr121689 13 22041357 to 22041363 6 - TSS region transcription start site region 121689
Hist1h2ag 13 22042478 to 22042949 471 - protein coding gene histone cluster 1, H2ag
Gm44486 13 22042545 to 22042682 137 + miRNA gene predicted gene, 44486
Cpgi5342 13 22042908 to 22043247 339 CpG island CpG island 5342
Tssr121690 13 22042951 to 22042978 27 - TSS region transcription start site region 121690
Tssr118818 13 22043189 to 22043208 19 + TSS region transcription start site region 118818
Hist1h2bj 13 22043230 to 22043658 428 + protein coding gene histone cluster 1, H2bj
Gm48356 13 22049514 to 22051450 1936 + unclassified gene predicted gene, 48356
Tssr118819 13 22049834 to 22049858 24 + TSS region transcription start site region 118819
Cpgi5343 13 22050656 to 22051331 675 CpG island CpG island 5343
n-TSgct5 13 22050686 to 22050767 81 - tRNA gene nuclear encoded tRNA serine 5 (anticodon GCT)
Vmn1r-ps92 13 22057346 to 22057862 516 - pseudogene vomeronasal 1 receptor, pseudogene 92