Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:17943455-18813458

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rala 13 17880575 to 17944217 63642 - protein coding gene v-ral simian leukemia viral oncogene A (ras related)
Cpgi5299 13 17943460 to 17944716 1256 CpG island CpG island 5299
Tssr121539 13 17944137 to 17944142 5 - TSS region transcription start site region 121539
Tssr121540 13 17944151 to 17944239 88 - TSS region transcription start site region 121540
Tssr118496 13 17944259 to 17944299 40 + TSS region transcription start site region 118496
Gm32699 13 17944291 to 17946278 1987 + protein coding gene predicted gene, 32699
Gm5628 13 17949908 to 17950956 1048 + pseudogene predicted gene 5628
A930027P06Rik 13 17951938 to 17954912 2974 + unclassified gene RIKEN cDNA A930027P06 gene
Gm48776 13 17960852 to 17961416 564 - pseudogene predicted gene, 48776
Gm48778 13 17961150 to 17992533 31383 - unclassified non-coding RNA gene predicted gene, 48778
Tssr118497 13 17967336 to 17967343 7 + TSS region transcription start site region 118497
Yae1d1 13 17986640 to 17993351 6711 - protein coding gene Yae1 domain containing 1
Cpgi5300 13 17992799 to 17993599 800 CpG island CpG island 5300
Tssr121541 13 17993306 to 17993362 56 - TSS region transcription start site region 121541
Gm48799 13 18002310 to 18008344 6034 - lincRNA gene predicted gene, 48799
Vdac3-ps1 13 18030741 to 18031593 852 - pseudogene voltage-dependent anion channel 3, pseudogene 1
Tssr121542 13 18031616 to 18031626 10 - TSS region transcription start site region 121542
Gm6575 13 18038561 to 18039257 696 + pseudogene predicted gene 6575
4930448F12Rik 13 18084947 to 18100202 15255 - lincRNA gene RIKEN cDNA 4930448F12 gene
Gm48800 13 18094472 to 18095954 1482 - pseudogene predicted gene, 48800
Tssr118498 13 18101821 to 18101828 7 + TSS region transcription start site region 118498
Pou6f2 13 18124960 to 18382044 257084 - protein coding gene POU domain, class 6, transcription factor 2
Cpgi5301 13 18211392 to 18211547 155 CpG island CpG island 5301
Gm31832 13 18281144 to 18284357 3213 + lncRNA gene predicted gene, 31832
Mcsq4 13 18322000 to 39773000 21451000 QTL methacholine sensitivity QTL 4, final
Gm46402 13 18340269 to 18346639 6370 - lncRNA gene predicted gene, 46402
Tssr121543 13 18378455 to 18378458 3 - TSS region transcription start site region 121543
Tssr121544 13 18397801 to 18397832 31 - TSS region transcription start site region 121544
Gm48829 13 18640257 to 18645349 5092 - lincRNA gene predicted gene, 48829
Tssr118499 13 18717289 to 18717316 27 + TSS region transcription start site region 118499
Vps41 13 18717292 to 18866811 149519 + protein coding gene VPS41 HOPS complex subunit
Cpgi5302 13 18717293 to 18717524 231 CpG island CpG island 5302
Tssr118500 13 18717680 to 18717687 7 + TSS region transcription start site region 118500
Tssr4003 13 18745098 to 18745112 14 + TSS region transcription start site region 4003
Tssr118501 13 18781417 to 18781435 18 + TSS region transcription start site region 118501