Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:112372118-112732132

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ankrd55 13 112288451 to 112384002 95551 + protein coding gene ankyrin repeat domain 55
Tssr121113 13 112373369 to 112373407 38 + TSS region transcription start site region 121113
D13Mit228 13 112388088 to 112388235 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 228
Gm33905 13 112411142 to 112423037 11895 + lncRNA gene predicted gene, 33905
2810403G07Rik 13 112414938 to 112417365 2427 - lincRNA gene RIKEN cDNA 2810403G07 gene
Tssr121114 13 112418142 to 112418184 42 + TSS region transcription start site region 121114
Gm48876 13 112424222 to 112426340 2118 - lincRNA gene predicted gene, 48876
Tssr124050 13 112424712 to 112424724 12 - TSS region transcription start site region 124050
Tssr121115 13 112427746 to 112427755 9 + TSS region transcription start site region 121115
Tssr121116 13 112427771 to 112427782 11 + TSS region transcription start site region 121116
Gm48879 13 112429434 to 112436596 7162 - lincRNA gene predicted gene, 48879
Tssr124051 13 112438039 to 112438062 23 - TSS region transcription start site region 124051
Tssr121117 13 112438148 to 112438178 30 + TSS region transcription start site region 121117
Tssr121118 13 112438227 to 112438232 5 + TSS region transcription start site region 121118
Tssr124052 13 112439987 to 112440001 14 - TSS region transcription start site region 124052
Tssr124053 13 112447258 to 112447290 32 - TSS region transcription start site region 124053
Tssr124054 13 112447323 to 112447332 9 - TSS region transcription start site region 124054
6720470G18Rik 13 112463095 to 112463976 881 unclassified gene RIKEN cDNA 6720470G18 gene
Tssr121119 13 112463599 to 112463638 39 + TSS region transcription start site region 121119
Cpgi6096 13 112463603 to 112464686 1083 CpG island CpG island 6096
Tssr124055 13 112463867 to 112463878 11 - TSS region transcription start site region 124055
Tssr124056 13 112463889 to 112463905 16 - TSS region transcription start site region 124056
Tssr124057 13 112463916 to 112463966 50 - TSS region transcription start site region 124057
Il6st 13 112464070 to 112506860 42790 + protein coding gene interleukin 6 signal transducer
Tssr121120 13 112464084 to 112464162 78 + TSS region transcription start site region 121120
Tssr121121 13 112464521 to 112464529 8 + TSS region transcription start site region 121121
Tssr121122 13 112465841 to 112465849 8 + TSS region transcription start site region 121122
Tssr121123 13 112466862 to 112466880 18 + TSS region transcription start site region 121123
Tssr121124 13 112467468 to 112467475 7 + TSS region transcription start site region 121124
Tssr121125 13 112467504 to 112467521 17 + TSS region transcription start site region 121125
Tssr121126 13 112474811 to 112474818 7 + TSS region transcription start site region 121126
Tssr121127 13 112480034 to 112480061 27 + TSS region transcription start site region 121127
Tssr121128 13 112480071 to 112480097 26 + TSS region transcription start site region 121128
Tssr121129 13 112481463 to 112481476 13 + TSS region transcription start site region 121129
Tssr121130 13 112482159 to 112482191 32 + TSS region transcription start site region 121130
Tssr121131 13 112488573 to 112488610 37 + TSS region transcription start site region 121131
Tssr121132 13 112489975 to 112489983 8 + TSS region transcription start site region 121132
Tssr121133 13 112495238 to 112495260 22 + TSS region transcription start site region 121133
Tssr121134 13 112504096 to 112504109 13 + TSS region transcription start site region 121134
Tssr121135 13 112507366 to 112507391 25 + TSS region transcription start site region 121135
Tssr121136 13 112508190 to 112508204 14 + TSS region transcription start site region 121136
Tssr121137 13 112509001 to 112509017 16 + TSS region transcription start site region 121137
Tssr121138 13 112509072 to 112509111 39 + TSS region transcription start site region 121138
Il31ra 13 112521849 to 112580732 58883 - protein coding gene interleukin 31 receptor A
Tssr124058 13 112552102 to 112552117 15 - TSS region transcription start site region 124058
Tssr124059 13 112552118 to 112552132 14 - TSS region transcription start site region 124059
Tssr124060 13 112562029 to 112562037 8 - TSS region transcription start site region 124060
Tssr124061 13 112578308 to 112578355 47 - TSS region transcription start site region 124061
Tssr124062 13 112580711 to 112580728 17 - TSS region transcription start site region 124062
Tssr124063 13 112591240 to 112591287 47 - TSS region transcription start site region 124063
Gm3226 13 112593743 to 112595084 1341 - pseudogene predicted gene 3226
Tssr124064 13 112595185 to 112595186 1 - TSS region transcription start site region 124064
Ddx4 13 112598333 to 112652475 54142 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
Tssr124065 13 112601799 to 112601819 20 - TSS region transcription start site region 124065
Tssr124066 13 112620676 to 112620683 7 - TSS region transcription start site region 124066
Tssr124067 13 112620712 to 112620720 8 - TSS region transcription start site region 124067
Tssr124068 13 112620737 to 112620746 9 - TSS region transcription start site region 124068
Tssr121139 13 112639465 to 112639477 12 + TSS region transcription start site region 121139
Tssr124069 13 112651417 to 112651421 4 - TSS region transcription start site region 124069
Cpgi6097 13 112651833 to 112652608 775 CpG island CpG island 6097
Tssr124070 13 112652241 to 112652255 14 - TSS region transcription start site region 124070
Tssr124071 13 112652269 to 112652276 7 - TSS region transcription start site region 124071
Tssr124072 13 112652295 to 112652355 60 - TSS region transcription start site region 124072
Tssr124073 13 112652357 to 112652370 13 - TSS region transcription start site region 124073
Cpgi6098 13 112660590 to 112661086 496 CpG island CpG island 6098
Tssr121140 13 112660671 to 112660682 11 + TSS region transcription start site region 121140
Tssr121141 13 112660739 to 112660795 56 + TSS region transcription start site region 121141
Slc38a9 13 112660751 to 112738749 77998 + protein coding gene solute carrier family 38, member 9
Gm47827 13 112669139 to 112685696 16557 - antisense lncRNA gene predicted gene, 47827
Tssr124074 13 112673249 to 112673264 15 - TSS region transcription start site region 124074
Tssr121142 13 112673365 to 112673374 9 + TSS region transcription start site region 121142
Tssr121143 13 112673382 to 112673416 34 + TSS region transcription start site region 121143
Tssr121144 13 112673426 to 112673433 7 + TSS region transcription start site region 121144
D13Mit261 13 112682534 to 112682655 121 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 261
Gm18883 13 112699679 to 112700036 357 + pseudogene predicted gene, 18883